RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 CARD11Q9BXL7 1154 aa9.3□□□□□ -0.92
CTDNEP1-204ENST00000570484 NPHP4O75161 1426 aaPredicted RBP9.3□□□□□ -0.92
CTDNEP1-204ENST00000570484 KIAA1210Q9ULL0 1709 aa9.29□□□□□ -0.92
CTDNEP1-204ENST00000570484 IQGAP1P46940 1657 aa9.29□□□□□ -0.92
CTDNEP1-204ENST00000570484 POLR1AO95602 1720 aaPredicted RBP9.28□□□□□ -0.92
CTDNEP1-204ENST00000570484 GPRASP1Q5JY77 1395 aa9.28□□□□□ -0.92
CTDNEP1-204ENST00000570484 LTKP29376 864 aa9.28□□□□□ -0.92
CTDNEP1-204ENST00000570484 HSPA2P54652 639 aa9.28□□□□□ -0.92
CTDNEP1-204ENST00000570484 CFAP70Q5T0N1 1121 aa9.28□□□□□ -0.92
CTDNEP1-204ENST00000570484 ALKQ9UM73 1620 aa9.27□□□□□ -0.92
CTDNEP1-204ENST00000570484 USP47Q96K76 1375 aa9.27□□□□□ -0.93
CTDNEP1-204ENST00000570484 C14orf93Q9H972 538 aaKnown RBP9.27□□□□□ -0.93
CTDNEP1-204ENST00000570484 MED14O60244 1454 aa9.27□□□□□ -0.93
CTDNEP1-204ENST00000570484 EIF4G2P78344 907 aaKnown RBP eCLIP9.26□□□□□ -0.93
CTDNEP1-204ENST00000570484 PIP4P2Q8N4L2 257 aa9.26□□□□□ -0.93
CTDNEP1-204ENST00000570484 NRXN3Q9Y4C0 1643 aa9.26□□□□□ -0.93
CTDNEP1-204ENST00000570484 SETD1BQ9UPS6 1966 aaKnown RBP9.26□□□□□ -0.93
CTDNEP1-204ENST00000570484 NCKAP5LQ9HCH0 1330 aa9.26□□□□□ -0.93
CTDNEP1-204ENST00000570484 ASXL1Q8IXJ9 1541 aa9.26□□□□□ -0.93
CTDNEP1-204ENST00000570484 ADGRB1O14514 1584 aa9.25□□□□□ -0.93
CTDNEP1-204ENST00000570484 ADAMTS13Q76LX8 1427 aa9.25□□□□□ -0.93
CTDNEP1-204ENST00000570484 SLC26A8Q96RN1 970 aa9.25□□□□□ -0.93
CTDNEP1-204ENST00000570484 YTHDC2Q9H6S0 1430 aaKnown RBP9.24□□□□□ -0.93
CTDNEP1-204ENST00000570484 NBPF1Q3BBV0 1214 aa9.24□□□□□ -0.93
CTDNEP1-204ENST00000570484 LRPPRCP42704 1394 aaKnown RBP9.24□□□□□ -0.93
CTDNEP1-204ENST00000570484 PIK3R4Q99570 1358 aa9.24□□□□□ -0.93
CTDNEP1-204ENST00000570484 PRKAR2AP13861 404 aaKnown RBP9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 TMEM132EQ6IEE7 984 aa9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 CHADLQ6NUI6 762 aa9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 STK26Q9P289 416 aa9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 TBX22Q9Y458 520 aa9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 FARP1Q9Y4F1 1045 aaPredicted RBP9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 METP08581 1390 aa9.23□□□□□ -0.93
CTDNEP1-204ENST00000570484 CPS1P31327 1500 aa9.22□□□□□ -0.93
CTDNEP1-204ENST00000570484 TRAK1Q9UPV9 953 aa9.22□□□□□ -0.93
CTDNEP1-204ENST00000570484 SETD1AO15047 1707 aaKnown RBP9.22□□□□□ -0.93
CTDNEP1-204ENST00000570484 PTCH1Q13635 1447 aa9.22□□□□□ -0.93
CTDNEP1-204ENST00000570484 DLC1Q96QB1 1528 aa9.21□□□□□ -0.93
CTDNEP1-204ENST00000570484 HSPA5P11021 654 aaKnown RBP9.21□□□□□ -0.94
CTDNEP1-204ENST00000570484 POGKQ9P215 609 aa9.21□□□□□ -0.94
CTDNEP1-204ENST00000570484 CENPJQ9HC77 1338 aaPredicted RBP9.21□□□□□ -0.94
CTDNEP1-204ENST00000570484 TECPR2O15040 1411 aa9.21□□□□□ -0.94
CTDNEP1-204ENST00000570484 KNDC1Q76NI1 1749 aa9.2□□□□□ -0.94
CTDNEP1-204ENST00000570484 ABCC11Q96J66 1382 aa9.2□□□□□ -0.94
CTDNEP1-204ENST00000570484 NKTRP30414 1462 aaKnown RBP9.2□□□□□ -0.94
CTDNEP1-204ENST00000570484 FAM135BQ49AJ0 1406 aa9.19□□□□□ -0.94
CTDNEP1-204ENST00000570484 NWD1Q149M9 1564 aa9.19□□□□□ -0.94
CTDNEP1-204ENST00000570484 XRN1Q8IZH2 1706 aaKnown RBP9.19□□□□□ -0.94
CTDNEP1-204ENST00000570484 ARHGEF28Q8N1W1 1705 aaKnown RBP9.19□□□□□ -0.94
CTDNEP1-204ENST00000570484 ST20-MTHFSA0A0A6YYL1 179 aa9.18□□□□□ -0.94
CTDNEP1-204ENST00000570484 SLC24A1O60721 1099 aa9.18□□□□□ -0.94
CTDNEP1-204ENST00000570484 SAFB2Q14151 953 aaKnown RBP eCLIP9.18□□□□□ -0.94
CTDNEP1-204ENST00000570484 RASEFQ8IZ41 740 aa9.18□□□□□ -0.94
CTDNEP1-204ENST00000570484 PRAM1Q96QH2 718 aa9.18□□□□□ -0.94
CTDNEP1-204ENST00000570484 AMOTL2Q9Y2J4 779 aa9.18□□□□□ -0.94
CTDNEP1-204ENST00000570484 QRICH2Q9H0J4 1663 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 PTPRUQ92729 1446 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 ROBO2Q9HCK4 1378 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 SBNO2Q9Y2G9 1366 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 ZNF316A6NFI3 1004 aaPredicted RBP9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 TMF1P82094 1093 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 GSE1Q14687 1217 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 CDCA8Q53HL2 280 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 C14orf37Q86TY3 774 aa9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 HIRIP3Q9BW71 556 aaPredicted RBP9.17□□□□□ -0.94
CTDNEP1-204ENST00000570484 KCNA6P17658 529 aa9.16□□□□□ -0.94
CTDNEP1-204ENST00000570484 POLR3GLQ9BT43 218 aa9.16□□□□□ -0.94
CTDNEP1-204ENST00000570484 STRCQ7RTU9 1775 aa9.16□□□□□ -0.94
CTDNEP1-204ENST00000570484 EVC2Q86UK5 1308 aa9.15□□□□□ -0.94
CTDNEP1-204ENST00000570484 MINK1Q8N4C8 1332 aaPredicted RBP9.15□□□□□ -0.94
CTDNEP1-204ENST00000570484 PLEKHH1Q9ULM0 1364 aa9.14□□□□□ -0.95
CTDNEP1-204ENST00000570484 CHRM1P11229 460 aaPredicted RBP9.14□□□□□ -0.95
CTDNEP1-204ENST00000570484 SIRT1Q96EB6 747 aa9.14□□□□□ -0.95
CTDNEP1-204ENST00000570484 ADGRB2O60241 1585 aa9.14□□□□□ -0.95
CTDNEP1-204ENST00000570484 ADGRL3Q9HAR2 1447 aa9.14□□□□□ -0.95
CTDNEP1-204ENST00000570484 DISP3Q9P2K9 1392 aa9.13□□□□□ -0.95
CTDNEP1-204ENST00000570484 ZNF335Q9H4Z2 1342 aaPredicted RBP9.13□□□□□ -0.95
CTDNEP1-204ENST00000570484 SRPK2P78362 688 aaKnown RBP9.13□□□□□ -0.95
CTDNEP1-204ENST00000570484 WAPLQ7Z5K2 1190 aa9.13□□□□□ -0.95
CTDNEP1-204ENST00000570484 PROSER2Q86WR7 435 aaPredicted RBP9.13□□□□□ -0.95
CTDNEP1-204ENST00000570484 FAM212AQ96EL1 285 aa9.13□□□□□ -0.95
CTDNEP1-204ENST00000570484 CDC42BPGQ6DT37 1551 aa9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 TULP4Q9NRJ4 1543 aa9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 ECM2O94769 699 aaPredicted RBP9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 TESK2Q96S53 571 aa9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 CIZ1Q9ULV3 898 aaPredicted RBP9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 TMEM94Q12767 1356 aa9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 ATAD2Q6PL18 1390 aa9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 CCDC7Q96M83 1385 aa9.12□□□□□ -0.95
CTDNEP1-204ENST00000570484 KIF7Q2M1P5 1343 aa9.11□□□□□ -0.95
CTDNEP1-204ENST00000570484 CHD2O14647 1828 aaKnown RBP9.11□□□□□ -0.95
CTDNEP1-204ENST00000570484 MSH6P52701 1360 aa9.11□□□□□ -0.95
CTDNEP1-204ENST00000570484 DCAF8Q5TAQ9 597 aa9.1□□□□□ -0.95
CTDNEP1-204ENST00000570484 DCCP43146 1447 aa9.1□□□□□ -0.95
CTDNEP1-204ENST00000570484 NCOA3Q9Y6Q9 1424 aa9.1□□□□□ -0.95
CTDNEP1-204ENST00000570484 NALCNQ8IZF0 1738 aa9.1□□□□□ -0.95
CTDNEP1-204ENST00000570484 NINLQ9Y2I6 1382 aa9.1□□□□□ -0.95
CTDNEP1-204ENST00000570484 WASHC2AQ641Q2 1341 aa9.09□□□□□ -0.95
CTDNEP1-204ENST00000570484 WASLO00401 505 aaPredicted RBP9.09□□□□□ -0.95
CTDNEP1-204ENST00000570484 LRRC7Q96NW7 1537 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms