RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CDC42BPGQ6DT37 1551 aa13.27□□□□□ -0.29
VPS35-211ENST00000569950 USP32Q8NFA0 1604 aa13.27□□□□□ -0.29
VPS35-211ENST00000569950 IQSEC2Q5JU85 1478 aa13.26□□□□□ -0.29
VPS35-211ENST00000569950 PRAM1Q96QH2 718 aa13.26□□□□□ -0.29
VPS35-211ENST00000569950 RGPD8O14715 1765 aaPredicted RBP13.25□□□□□ -0.29
VPS35-211ENST00000569950 USP47Q96K76 1375 aa13.25□□□□□ -0.29
VPS35-211ENST00000569950 PROSER2Q86WR7 435 aaPredicted RBP13.25□□□□□ -0.29
VPS35-211ENST00000569950 CARD11Q9BXL7 1154 aa13.25□□□□□ -0.29
VPS35-211ENST00000569950 TESK2Q96S53 571 aa13.24□□□□□ -0.29
VPS35-211ENST00000569950 SBNO2Q9Y2G9 1366 aa13.23□□□□□ -0.29
VPS35-211ENST00000569950 DCCP43146 1447 aa13.22□□□□□ -0.29
VPS35-211ENST00000569950 CERKQ8TCT0 537 aa13.22□□□□□ -0.29
VPS35-211ENST00000569950 TOPAZ1Q8N9V7 1692 aa13.21□□□□□ -0.29
VPS35-211ENST00000569950 CENPJQ9HC77 1338 aaPredicted RBP13.21□□□□□ -0.29
VPS35-211ENST00000569950 MST1RQ04912 1400 aa13.21□□□□□ -0.3
VPS35-211ENST00000569950 ST20-MTHFSA0A0A6YYL1 179 aa13.2□□□□□ -0.3
VPS35-211ENST00000569950 SAFB2Q14151 953 aaKnown RBP eCLIP13.2□□□□□ -0.3
VPS35-211ENST00000569950 ATP7BP35670 1465 aa13.19□□□□□ -0.3
VPS35-211ENST00000569950 MINK1Q8N4C8 1332 aaPredicted RBP13.18□□□□□ -0.3
VPS35-211ENST00000569950 PRR36Q9H6K5 1346 aa13.18□□□□□ -0.3
VPS35-211ENST00000569950 HSPA5P11021 654 aaKnown RBP13.18□□□□□ -0.3
VPS35-211ENST00000569950 C19orf44Q9H6X5 657 aa13.18□□□□□ -0.3
VPS35-211ENST00000569950 EIF3AQ14152 1382 aaKnown RBP13.18□□□□□ -0.3
VPS35-211ENST00000569950 DISP3Q9P2K9 1392 aa13.18□□□□□ -0.3
VPS35-211ENST00000569950 MYOM1P52179 1685 aa13.18□□□□□ -0.3
VPS35-211ENST00000569950 ZEB1P37275 1124 aaPredicted RBP13.17□□□□□ -0.3
VPS35-211ENST00000569950 HIRIP3Q9BW71 556 aaPredicted RBP13.17□□□□□ -0.3
VPS35-211ENST00000569950 POGKQ9P215 609 aa13.17□□□□□ -0.3
VPS35-211ENST00000569950 MSH6P52701 1360 aa13.17□□□□□ -0.3
VPS35-211ENST00000569950 C1orf167Q5SNV9 1468 aa13.16□□□□□ -0.3
VPS35-211ENST00000569950 C11orf95C9JLR9 678 aaPredicted RBP13.15□□□□□ -0.3
VPS35-211ENST00000569950 WASLO00401 505 aaPredicted RBP13.15□□□□□ -0.3
VPS35-211ENST00000569950 ROBO1Q9Y6N7 1651 aa13.15□□□□□ -0.31
VPS35-211ENST00000569950 NHSL1Q5SYE7 1610 aa13.14□□□□□ -0.31
VPS35-211ENST00000569950 ITSN1Q15811 1721 aa13.14□□□□□ -0.31
VPS35-211ENST00000569950 EIF4G2P78344 907 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPS35-211ENST00000569950 ANKARQ7Z5J8 1434 aa13.13□□□□□ -0.31
VPS35-211ENST00000569950 CDK19Q9BWU1 502 aa13.12□□□□□ -0.31
VPS35-211ENST00000569950 AKAP12Q02952 1782 aa13.12□□□□□ -0.31
VPS35-211ENST00000569950 CD163L1Q9NR16 1453 aa13.11□□□□□ -0.31
VPS35-211ENST00000569950 KIF1AQ12756 1690 aa13.1□□□□□ -0.31
VPS35-211ENST00000569950 C14orf37Q86TY3 774 aa13.1□□□□□ -0.31
VPS35-211ENST00000569950 CADPS2Q86UW7 1296 aa13.1□□□□□ -0.31
VPS35-211ENST00000569950 ORAI2Q96SN7 254 aa13.1□□□□□ -0.31
VPS35-211ENST00000569950 CABP2Q9NPB3 220 aa13.1□□□□□ -0.31
VPS35-211ENST00000569950 SLAIN2Q9P270 581 aa13.1□□□□□ -0.31
VPS35-211ENST00000569950 TRPM3Q9HCF6 1732 aaPredicted RBP13.1□□□□□ -0.31
VPS35-211ENST00000569950 AHDC1Q5TGY3 1603 aaPredicted RBP13.1□□□□□ -0.31
VPS35-211ENST00000569950 NUTM2FA1L443 756 aa13.09□□□□□ -0.31
VPS35-211ENST00000569950 MON2Q7Z3U7 1717 aa13.08□□□□□ -0.32
VPS35-211ENST00000569950 NRKQ7Z2Y5 1582 aa13.08□□□□□ -0.32
VPS35-211ENST00000569950 ATF3P18847 181 aa13.08□□□□□ -0.32
VPS35-211ENST00000569950 BRINP3Q76B58 766 aa13.08□□□□□ -0.32
VPS35-211ENST00000569950 NUDT16Q96DE0 195 aaKnown RBP13.08□□□□□ -0.32
VPS35-211ENST00000569950 COL16A1Q07092 1604 aaPredicted RBP13.08□□□□□ -0.32
VPS35-211ENST00000569950 EVC2Q86UK5 1308 aa13.08□□□□□ -0.32
VPS35-211ENST00000569950 UBAP1LF5GYI3 381 aa13.07□□□□□ -0.32
VPS35-211ENST00000569950 PUS7Q96PZ0 661 aaKnown RBP13.07□□□□□ -0.32
VPS35-211ENST00000569950 PXDNQ92626 1479 aa13.07□□□□□ -0.32
VPS35-211ENST00000569950 POLR3AO14802 1390 aaPredicted RBP13.07□□□□□ -0.32
VPS35-211ENST00000569950 KIF7Q2M1P5 1343 aa13.06□□□□□ -0.32
VPS35-211ENST00000569950 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
VPS35-211ENST00000569950 PPIP5K1Q6PFW1 1433 aa13.05□□□□□ -0.32
VPS35-211ENST00000569950 MARF1Q9Y4F3 1742 aaKnown RBP13.05□□□□□ -0.32
VPS35-211ENST00000569950 PLEKHG3A1L390 1219 aa13.05□□□□□ -0.32
VPS35-211ENST00000569950 WASHC2AQ641Q2 1341 aa13.05□□□□□ -0.32
VPS35-211ENST00000569950 ALS2Q96Q42 1657 aa13.05□□□□□ -0.32
VPS35-211ENST00000569950 SSH2Q76I76 1423 aa13.05□□□□□ -0.32
VPS35-211ENST00000569950 TOM1O60784 492 aa13.04□□□□□ -0.32
VPS35-211ENST00000569950 SRPK2P78362 688 aaKnown RBP13.04□□□□□ -0.32
VPS35-211ENST00000569950 TMF1P82094 1093 aa13.04□□□□□ -0.32
VPS35-211ENST00000569950 DDX17Q92841 729 aaKnown RBP13.04□□□□□ -0.32
VPS35-211ENST00000569950 CCDC61Q9Y6R9 512 aa13.04□□□□□ -0.32
VPS35-211ENST00000569950 PHLPP1O60346 1717 aa13.04□□□□□ -0.32
VPS35-211ENST00000569950 ATAD2Q6PL18 1390 aa13.04□□□□□ -0.32
VPS35-211ENST00000569950 CCDC7Q96M83 1385 aa13.04□□□□□ -0.32
VPS35-211ENST00000569950 CRYBG1Q9Y4K1 1723 aa13.03□□□□□ -0.32
VPS35-211ENST00000569950 ESCO1Q5FWF5 840 aa13.02□□□□□ -0.33
VPS35-211ENST00000569950 SLC12A5Q9H2X9 1139 aa13.02□□□□□ -0.33
VPS35-211ENST00000569950 CABP1Q9NZU7 370 aa13.02□□□□□ -0.33
VPS35-211ENST00000569950 PHF8Q9UPP1 1060 aa13.02□□□□□ -0.33
VPS35-211ENST00000569950 PMFBP1Q8TBY8 1022 aa13.01□□□□□ -0.33
VPS35-211ENST00000569950 SOS2Q07890 1332 aaPredicted RBP13.01□□□□□ -0.33
VPS35-211ENST00000569950 PIK3C2AO00443 1686 aa13□□□□□ -0.33
VPS35-211ENST00000569950 USP54Q70EL1 1684 aa13□□□□□ -0.33
VPS35-211ENST00000569950 A0A1W2PP64 1363 aa13□□□□□ -0.33
VPS35-211ENST00000569950 ACEP12821 1306 aa13□□□□□ -0.33
VPS35-211ENST00000569950 SLC24A1O60721 1099 aa13□□□□□ -0.33
VPS35-211ENST00000569950 PIP4K2BP78356 416 aa13□□□□□ -0.33
VPS35-211ENST00000569950 FBXO41Q8TF61 875 aa13□□□□□ -0.33
VPS35-211ENST00000569950 USP6P35125 1406 aa12.99□□□□□ -0.33
VPS35-211ENST00000569950 NINLQ9Y2I6 1382 aa12.99□□□□□ -0.33
VPS35-211ENST00000569950 FOXO3O43524 673 aa12.99□□□□□ -0.33
VPS35-211ENST00000569950 ABCA3Q99758 1704 aa12.99□□□□□ -0.33
VPS35-211ENST00000569950 COL22A1Q8NFW1 1626 aaPredicted RBP12.99□□□□□ -0.33
VPS35-211ENST00000569950 SHPRHQ149N8 1683 aa12.98□□□□□ -0.33
VPS35-211ENST00000569950 ANKRD36BQ8N2N9 1353 aa12.97□□□□□ -0.33
VPS35-211ENST00000569950 XPCQ01831 940 aaPredicted RBP12.97□□□□□ -0.33
VPS35-211ENST00000569950 CARD14Q9BXL6 1004 aa12.97□□□□□ -0.33
VPS35-211ENST00000569950 HSPA1LP34931 641 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms