RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 SOS2Q07890 1332 aaPredicted RBP22.31■■□□□ 1.16
CLN3-236ENST00000568558 RGL3Q3MIN7 710 aa22.29■■□□□ 1.16
CLN3-236ENST00000568558 C8orf37Q96NL8 207 aa22.28■■□□□ 1.16
CLN3-236ENST00000568558 PIK3C2GO75747 1445 aa22.28■■□□□ 1.16
CLN3-236ENST00000568558 LRPPRCP42704 1394 aaKnown RBP22.26■■□□□ 1.15
CLN3-236ENST00000568558 FMN2Q9NZ56 1722 aa22.26■■□□□ 1.15
CLN3-236ENST00000568558 MARF1Q9Y4F3 1742 aaKnown RBP22.26■■□□□ 1.15
CLN3-236ENST00000568558 UPF1Q92900 1129 aaKnown RBP eCLIP22.24■■□□□ 1.15
CLN3-236ENST00000568558 ABCC11Q96J66 1382 aa22.24■■□□□ 1.15
CLN3-236ENST00000568558 PXDNQ92626 1479 aa22.23■■□□□ 1.15
CLN3-236ENST00000568558 RGS12O14924 1447 aa22.23■■□□□ 1.15
CLN3-236ENST00000568558 ADAMTS2O95450 1211 aa22.22■■□□□ 1.15
CLN3-236ENST00000568558 STK26Q9P289 416 aa22.22■■□□□ 1.15
CLN3-236ENST00000568558 ACIN1Q9UKV3 1341 aaKnown RBP22.22■■□□□ 1.15
CLN3-236ENST00000568558 ESCO1Q5FWF5 840 aa22.21■■□□□ 1.15
CLN3-236ENST00000568558 TMEM132EQ6IEE7 984 aa22.21■■□□□ 1.15
CLN3-236ENST00000568558 WAPLQ7Z5K2 1190 aa22.21■■□□□ 1.15
CLN3-236ENST00000568558 QTRT2Q9H974 415 aaKnown RBP22.21■■□□□ 1.15
CLN3-236ENST00000568558 NPHP3Q7Z494 1330 aa22.21■■□□□ 1.15
CLN3-236ENST00000568558 PLEKHH1Q9ULM0 1364 aa22.21■■□□□ 1.15
CLN3-236ENST00000568558 YTHDC2Q9H6S0 1430 aaKnown RBP22.21■■□□□ 1.15
CLN3-236ENST00000568558 KIF1AQ12756 1690 aa22.2■■□□□ 1.15
CLN3-236ENST00000568558 RGPD8O14715 1765 aaPredicted RBP22.2■■□□□ 1.14
CLN3-236ENST00000568558 RBM6P78332 1123 aaKnown RBP22.2■■□□□ 1.14
CLN3-236ENST00000568558 NGLY1Q96IV0 654 aa22.2■■□□□ 1.14
CLN3-236ENST00000568558 NRXN1Q9ULB1 1477 aa22.2■■□□□ 1.14
CLN3-236ENST00000568558 MYOM2P54296 1465 aa22.19■■□□□ 1.14
CLN3-236ENST00000568558 NUTM2FA1L443 756 aa22.15■■□□□ 1.14
CLN3-236ENST00000568558 FOXO3O43524 673 aa22.14■■□□□ 1.13
CLN3-236ENST00000568558 C14orf93Q9H972 538 aaKnown RBP22.14■■□□□ 1.13
CLN3-236ENST00000568558 USP21Q9UK80 565 aa22.14■■□□□ 1.13
CLN3-236ENST00000568558 RAB3GAP2Q9H2M9 1393 aa22.13■■□□□ 1.13
CLN3-236ENST00000568558 XPCQ01831 940 aaPredicted RBP22.13■■□□□ 1.13
CLN3-236ENST00000568558 FNBP4Q8N3X1 1017 aaPredicted RBP22.13■■□□□ 1.13
CLN3-236ENST00000568558 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.12■■□□□ 1.13
CLN3-236ENST00000568558 SIRT1Q96EB6 747 aa22.12■■□□□ 1.13
CLN3-236ENST00000568558 ATRNO75882 1429 aa22.11■■□□□ 1.13
CLN3-236ENST00000568558 CFAP70Q5T0N1 1121 aa22.1■■□□□ 1.13
CLN3-236ENST00000568558 TRPC5Q9UL62 973 aaPredicted RBP22.1■■□□□ 1.13
CLN3-236ENST00000568558 DHX57Q6P158 1386 aaKnown RBP22.1■■□□□ 1.13
CLN3-236ENST00000568558 DLC1Q96QB1 1528 aa22.09■■□□□ 1.13
CLN3-236ENST00000568558 BCL9LQ86UU0 1499 aa22.08■■□□□ 1.12
CLN3-236ENST00000568558 USP32Q8NFA0 1604 aa22.06■■□□□ 1.12
CLN3-236ENST00000568558 ABCA3Q99758 1704 aa22.06■■□□□ 1.12
CLN3-236ENST00000568558 ADGRB1O14514 1584 aa22.06■■□□□ 1.12
CLN3-236ENST00000568558 ADGRB2O60241 1585 aa22.06■■□□□ 1.12
CLN3-236ENST00000568558 SPATA31A3Q5VYP0 1347 aa22.06■■□□□ 1.12
CLN3-236ENST00000568558 ATAD2Q6PL18 1390 aa22.03■■□□□ 1.12
CLN3-236ENST00000568558 KRT28Q7Z3Y7 464 aa22.02■■□□□ 1.12
CLN3-236ENST00000568558 PRAM1Q96QH2 718 aa22.02■■□□□ 1.12
CLN3-236ENST00000568558 PHF8Q9UPP1 1060 aa22.02■■□□□ 1.12
CLN3-236ENST00000568558 TNS3Q68CZ2 1445 aa22.02■■□□□ 1.12
CLN3-236ENST00000568558 SLIT2O94813 1529 aa22.01■■□□□ 1.11
CLN3-236ENST00000568558 PLCH1Q4KWH8 1693 aa22.01■■□□□ 1.11
CLN3-236ENST00000568558 SAFB2Q14151 953 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-236ENST00000568558 GLI3P10071 1580 aa21.99■■□□□ 1.11
CLN3-236ENST00000568558 ANKARQ7Z5J8 1434 aa21.99■■□□□ 1.11
CLN3-236ENST00000568558 NWD2Q9ULI1 1742 aa21.99■■□□□ 1.11
CLN3-236ENST00000568558 TRPM3Q9HCF6 1732 aaPredicted RBP21.98■■□□□ 1.11
CLN3-236ENST00000568558 EP400Q96L91 3159 aa21.97■■□□□ 1.11
CLN3-236ENST00000568558 POGKQ9P215 609 aa21.97■■□□□ 1.11
CLN3-236ENST00000568558 SBNO1A3KN83 1393 aa21.97■■□□□ 1.11
CLN3-236ENST00000568558 ARHGEF28Q8N1W1 1705 aaKnown RBP21.97■■□□□ 1.11
CLN3-236ENST00000568558 BRWD3Q6RI45 1802 aa21.96■■□□□ 1.11
CLN3-236ENST00000568558 PSME1Q06323 249 aa21.96■■□□□ 1.11
CLN3-236ENST00000568558 GJD4Q96KN9 370 aaPredicted RBP21.96■■□□□ 1.11
CLN3-236ENST00000568558 RALGAPBQ86X10 1494 aa21.95■■□□□ 1.1
CLN3-236ENST00000568558 ALS2Q96Q42 1657 aa21.95■■□□□ 1.1
CLN3-236ENST00000568558 UNC5CLQ8IV45 518 aa21.94■■□□□ 1.1
CLN3-236ENST00000568558 TRAK1Q9UPV9 953 aa21.94■■□□□ 1.1
CLN3-236ENST00000568558 ARHGEF10O15013 1369 aa21.93■■□□□ 1.1
CLN3-236ENST00000568558 DCAF11Q8TEB1 546 aa21.93■■□□□ 1.1
CLN3-236ENST00000568558 TULP4Q9NRJ4 1543 aa21.93■■□□□ 1.1
CLN3-236ENST00000568558 ITSN1Q15811 1721 aa21.92■■□□□ 1.1
CLN3-236ENST00000568558 KDM2AQ9Y2K7 1162 aa21.92■■□□□ 1.1
CLN3-236ENST00000568558 HRCP23327 699 aa21.91■■□□□ 1.1
CLN3-236ENST00000568558 PMFBP1Q8TBY8 1022 aa21.91■■□□□ 1.1
CLN3-236ENST00000568558 CABLES1Q8TDN4 633 aa21.91■■□□□ 1.1
CLN3-236ENST00000568558 EIF3AQ14152 1382 aaKnown RBP21.9■■□□□ 1.1
CLN3-236ENST00000568558 NRAPQ86VF7 1730 aa21.9■■□□□ 1.1
CLN3-236ENST00000568558 CRYBG1Q9Y4K1 1723 aa21.9■■□□□ 1.1
CLN3-236ENST00000568558 HAP1P54257 671 aaPredicted RBP21.9■■□□□ 1.1
CLN3-236ENST00000568558 STAC3Q96MF2 364 aa21.9■■□□□ 1.1
CLN3-236ENST00000568558 HIRIP3Q9BW71 556 aaPredicted RBP21.9■■□□□ 1.1
CLN3-236ENST00000568558 MINK1Q8N4C8 1332 aaPredicted RBP21.89■■□□□ 1.1
CLN3-236ENST00000568558 PRR36Q9H6K5 1346 aa21.88■■□□□ 1.09
CLN3-236ENST00000568558 LMOD2Q6P5Q4 547 aa21.88■■□□□ 1.09
CLN3-236ENST00000568558 KIAA1210Q9ULL0 1709 aa21.88■■□□□ 1.09
CLN3-236ENST00000568558 PLEKHG5O94827 1062 aa21.86■■□□□ 1.09
CLN3-236ENST00000568558 COL14A1Q05707 1796 aaKnown RBP21.85■■□□□ 1.09
CLN3-236ENST00000568558 WASLO00401 505 aaPredicted RBP21.85■■□□□ 1.09
CLN3-236ENST00000568558 CCDC125Q86Z20 511 aa21.85■■□□□ 1.09
CLN3-236ENST00000568558 VPS72Q15906 364 aa21.84■■□□□ 1.09
CLN3-236ENST00000568558 GPRASP1Q5JY77 1395 aa21.84■■□□□ 1.09
CLN3-236ENST00000568558 ATP7BP35670 1465 aa21.83■■□□□ 1.08
CLN3-236ENST00000568558 TOPAZ1Q8N9V7 1692 aa21.82■■□□□ 1.08
CLN3-236ENST00000568558 FAM83GA6ND36 823 aa21.8■■□□□ 1.08
CLN3-236ENST00000568558 BLMP54132 1417 aaPredicted RBP21.8■■□□□ 1.08
CLN3-236ENST00000568558 SEPT12Q8IYM1 358 aa21.79■■□□□ 1.08
CLN3-236ENST00000568558 PHRF1Q9P1Y6 1649 aaKnown RBP21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms