RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 KNDC1Q76NI1 1749 aa25.03■■□□□ 1.6
CLN3-231ENST00000568422 CDK12Q9NYV4 1490 aaPredicted RBP25.03■■□□□ 1.6
CLN3-231ENST00000568422 LRPPRCP42704 1394 aaKnown RBP25.02■■□□□ 1.6
CLN3-231ENST00000568422 PIK3C2GO75747 1445 aa25.02■■□□□ 1.6
CLN3-231ENST00000568422 ABCC11Q96J66 1382 aa25.01■■□□□ 1.59
CLN3-231ENST00000568422 C8orf37Q96NL8 207 aa24.99■■□□□ 1.59
CLN3-231ENST00000568422 STK26Q9P289 416 aa24.98■■□□□ 1.59
CLN3-231ENST00000568422 COL22A1Q8NFW1 1626 aaPredicted RBP24.97■■□□□ 1.59
CLN3-231ENST00000568422 NPHP3Q7Z494 1330 aa24.97■■□□□ 1.59
CLN3-231ENST00000568422 ESCO1Q5FWF5 840 aa24.97■■□□□ 1.59
CLN3-231ENST00000568422 TMEM132EQ6IEE7 984 aa24.95■■□□□ 1.58
CLN3-231ENST00000568422 WAPLQ7Z5K2 1190 aa24.95■■□□□ 1.58
CLN3-231ENST00000568422 YTHDC2Q9H6S0 1430 aaKnown RBP24.95■■□□□ 1.58
CLN3-231ENST00000568422 SIRT1Q96EB6 747 aa24.94■■□□□ 1.58
CLN3-231ENST00000568422 NGLY1Q96IV0 654 aa24.94■■□□□ 1.58
CLN3-231ENST00000568422 RBM6P78332 1123 aaKnown RBP24.93■■□□□ 1.58
CLN3-231ENST00000568422 C14orf93Q9H972 538 aaKnown RBP24.93■■□□□ 1.58
CLN3-231ENST00000568422 QTRT2Q9H974 415 aaKnown RBP24.93■■□□□ 1.58
CLN3-231ENST00000568422 MYOM2P54296 1465 aa24.93■■□□□ 1.58
CLN3-231ENST00000568422 NRXN1Q9ULB1 1477 aa24.92■■□□□ 1.58
CLN3-231ENST00000568422 ADAMTS2O95450 1211 aa24.92■■□□□ 1.58
CLN3-231ENST00000568422 UPF1Q92900 1129 aaKnown RBP eCLIP24.92■■□□□ 1.58
CLN3-231ENST00000568422 FMN2Q9NZ56 1722 aa24.92■■□□□ 1.58
CLN3-231ENST00000568422 PXDNQ92626 1479 aa24.91■■□□□ 1.58
CLN3-231ENST00000568422 RAB3GAP2Q9H2M9 1393 aa24.9■■□□□ 1.58
CLN3-231ENST00000568422 KIF1AQ12756 1690 aa24.89■■□□□ 1.58
CLN3-231ENST00000568422 PLEKHH1Q9ULM0 1364 aa24.89■■□□□ 1.57
CLN3-231ENST00000568422 FOXO3O43524 673 aa24.88■■□□□ 1.57
CLN3-231ENST00000568422 MARF1Q9Y4F3 1742 aaKnown RBP24.88■■□□□ 1.57
CLN3-231ENST00000568422 DHX57Q6P158 1386 aaKnown RBP24.88■■□□□ 1.57
CLN3-231ENST00000568422 FNBP4Q8N3X1 1017 aaPredicted RBP24.85■■□□□ 1.57
CLN3-231ENST00000568422 USP21Q9UK80 565 aa24.85■■□□□ 1.57
CLN3-231ENST00000568422 RGS12O14924 1447 aa24.85■■□□□ 1.57
CLN3-231ENST00000568422 NUTM2FA1L443 756 aa24.84■■□□□ 1.57
CLN3-231ENST00000568422 CFAP70Q5T0N1 1121 aa24.84■■□□□ 1.57
CLN3-231ENST00000568422 TRPC5Q9UL62 973 aaPredicted RBP24.83■■□□□ 1.57
CLN3-231ENST00000568422 RGPD8O14715 1765 aaPredicted RBP24.82■■□□□ 1.56
CLN3-231ENST00000568422 XPCQ01831 940 aaPredicted RBP24.81■■□□□ 1.56
CLN3-231ENST00000568422 DLC1Q96QB1 1528 aa24.8■■□□□ 1.56
CLN3-231ENST00000568422 HRCP23327 699 aa24.79■■□□□ 1.56
CLN3-231ENST00000568422 STAC3Q96MF2 364 aa24.78■■□□□ 1.56
CLN3-231ENST00000568422 ATRNO75882 1429 aa24.78■■□□□ 1.56
CLN3-231ENST00000568422 PRAM1Q96QH2 718 aa24.77■■□□□ 1.56
CLN3-231ENST00000568422 SPATA31A3Q5VYP0 1347 aa24.77■■□□□ 1.56
CLN3-231ENST00000568422 KRT28Q7Z3Y7 464 aa24.75■■□□□ 1.55
CLN3-231ENST00000568422 POGKQ9P215 609 aa24.75■■□□□ 1.55
CLN3-231ENST00000568422 PHF8Q9UPP1 1060 aa24.75■■□□□ 1.55
CLN3-231ENST00000568422 BCL9LQ86UU0 1499 aa24.75■■□□□ 1.55
CLN3-231ENST00000568422 PSME1Q06323 249 aa24.74■■□□□ 1.55
CLN3-231ENST00000568422 ADGRB1O14514 1584 aa24.74■■□□□ 1.55
CLN3-231ENST00000568422 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.74■■□□□ 1.55
CLN3-231ENST00000568422 ADGRB2O60241 1585 aa24.73■■□□□ 1.55
CLN3-231ENST00000568422 ANKARQ7Z5J8 1434 aa24.72■■□□□ 1.55
CLN3-231ENST00000568422 ATAD2Q6PL18 1390 aa24.72■■□□□ 1.55
CLN3-231ENST00000568422 SAFB2Q14151 953 aaKnown RBP eCLIP24.71■■□□□ 1.55
CLN3-231ENST00000568422 TNS3Q68CZ2 1445 aa24.7■■□□□ 1.55
CLN3-231ENST00000568422 DCAF11Q8TEB1 546 aa24.7■■□□□ 1.54
CLN3-231ENST00000568422 USP32Q8NFA0 1604 aa24.7■■□□□ 1.54
CLN3-231ENST00000568422 SBNO1A3KN83 1393 aa24.69■■□□□ 1.54
CLN3-231ENST00000568422 KDM2AQ9Y2K7 1162 aa24.68■■□□□ 1.54
CLN3-231ENST00000568422 EIF3AQ14152 1382 aaKnown RBP24.67■■□□□ 1.54
CLN3-231ENST00000568422 SLIT2O94813 1529 aa24.67■■□□□ 1.54
CLN3-231ENST00000568422 GJD4Q96KN9 370 aaPredicted RBP24.67■■□□□ 1.54
CLN3-231ENST00000568422 UNC5CLQ8IV45 518 aa24.66■■□□□ 1.54
CLN3-231ENST00000568422 TRAK1Q9UPV9 953 aa24.66■■□□□ 1.54
CLN3-231ENST00000568422 ARHGEF10O15013 1369 aa24.66■■□□□ 1.54
CLN3-231ENST00000568422 HAP1P54257 671 aaPredicted RBP24.64■■□□□ 1.54
CLN3-231ENST00000568422 ABCA3Q99758 1704 aa24.63■■□□□ 1.53
CLN3-231ENST00000568422 NWD2Q9ULI1 1742 aa24.62■■□□□ 1.53
CLN3-231ENST00000568422 TULP4Q9NRJ4 1543 aa24.61■■□□□ 1.53
CLN3-231ENST00000568422 EP400Q96L91 3159 aa24.6■■□□□ 1.53
CLN3-231ENST00000568422 PMFBP1Q8TBY8 1022 aa24.6■■□□□ 1.53
CLN3-231ENST00000568422 HIRIP3Q9BW71 556 aaPredicted RBP24.6■■□□□ 1.53
CLN3-231ENST00000568422 MINK1Q8N4C8 1332 aaPredicted RBP24.6■■□□□ 1.53
CLN3-231ENST00000568422 TRPM3Q9HCF6 1732 aaPredicted RBP24.59■■□□□ 1.53
CLN3-231ENST00000568422 LMOD2Q6P5Q4 547 aa24.59■■□□□ 1.53
CLN3-231ENST00000568422 CCDC125Q86Z20 511 aa24.59■■□□□ 1.53
CLN3-231ENST00000568422 PLCH1Q4KWH8 1693 aa24.59■■□□□ 1.53
CLN3-231ENST00000568422 RALGAPBQ86X10 1494 aa24.58■■□□□ 1.53
CLN3-231ENST00000568422 ARHGEF28Q8N1W1 1705 aaKnown RBP24.58■■□□□ 1.53
CLN3-231ENST00000568422 GPRASP1Q5JY77 1395 aa24.58■■□□□ 1.53
CLN3-231ENST00000568422 WASLO00401 505 aaPredicted RBP24.58■■□□□ 1.53
CLN3-231ENST00000568422 GLI3P10071 1580 aa24.58■■□□□ 1.52
CLN3-231ENST00000568422 CABLES1Q8TDN4 633 aa24.57■■□□□ 1.52
CLN3-231ENST00000568422 ITSN1Q15811 1721 aa24.56■■□□□ 1.52
CLN3-231ENST00000568422 ALS2Q96Q42 1657 aa24.56■■□□□ 1.52
CLN3-231ENST00000568422 KIAA1210Q9ULL0 1709 aa24.55■■□□□ 1.52
CLN3-231ENST00000568422 VPS72Q15906 364 aa24.54■■□□□ 1.52
CLN3-231ENST00000568422 PRR36Q9H6K5 1346 aa24.54■■□□□ 1.52
CLN3-231ENST00000568422 BRWD3Q6RI45 1802 aa24.52■■□□□ 1.52
CLN3-231ENST00000568422 FAM83GA6ND36 823 aa24.5■■□□□ 1.51
CLN3-231ENST00000568422 PLEKHG5O94827 1062 aa24.5■■□□□ 1.51
CLN3-231ENST00000568422 NGDNQ8NEJ9 315 aaKnown RBP24.5■■□□□ 1.51
CLN3-231ENST00000568422 COL14A1Q05707 1796 aaKnown RBP24.49■■□□□ 1.51
CLN3-231ENST00000568422 ONECUT3O60422 494 aaPredicted RBP24.48■■□□□ 1.51
CLN3-231ENST00000568422 CCDC9Q9Y3X0 531 aaKnown RBP24.47■■□□□ 1.51
CLN3-231ENST00000568422 NRAPQ86VF7 1730 aa24.47■■□□□ 1.51
CLN3-231ENST00000568422 ATP7BP35670 1465 aa24.46■■□□□ 1.51
CLN3-231ENST00000568422 SEPT12Q8IYM1 358 aa24.46■■□□□ 1.51
CLN3-231ENST00000568422 NUDT16Q96DE0 195 aaKnown RBP24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms