RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 DEFB132Q7Z7B7 95 aa18.3■□□□□ 0.52
CLK3-222ENST00000568232 GJD4Q96KN9 370 aaPredicted RBP18.29■□□□□ 0.52
CLK3-222ENST00000568232 LAMC1P11047 1609 aa18.28■□□□□ 0.52
CLK3-222ENST00000568232 BLMP54132 1417 aaPredicted RBP18.25■□□□□ 0.51
CLK3-222ENST00000568232 MYOM2P54296 1465 aa18.25■□□□□ 0.51
CLK3-222ENST00000568232 COL22A1Q8NFW1 1626 aaPredicted RBP18.24■□□□□ 0.51
CLK3-222ENST00000568232 NUP155O75694 1391 aa18.24■□□□□ 0.51
CLK3-222ENST00000568232 IQGAP3Q86VI3 1631 aa18.23■□□□□ 0.51
CLK3-222ENST00000568232 ROBO2Q9HCK4 1378 aa18.23■□□□□ 0.51
CLK3-222ENST00000568232 XPCQ01831 940 aaPredicted RBP18.23■□□□□ 0.51
CLK3-222ENST00000568232 NPM3O75607 178 aaKnown RBP18.22■□□□□ 0.51
CLK3-222ENST00000568232 PSDA5PKW4 1024 aaPredicted RBP18.2■□□□□ 0.5
CLK3-222ENST00000568232 RALGAPBQ86X10 1494 aa18.2■□□□□ 0.5
CLK3-222ENST00000568232 GLI3P10071 1580 aa18.19■□□□□ 0.5
CLK3-222ENST00000568232 SF3B2Q13435 895 aaKnown RBP18.19■□□□□ 0.5
CLK3-222ENST00000568232 ESCO1Q5FWF5 840 aa18.19■□□□□ 0.5
CLK3-222ENST00000568232 LRP5O75197 1615 aa18.19■□□□□ 0.5
CLK3-222ENST00000568232 FOXO3O43524 673 aa18.18■□□□□ 0.5
CLK3-222ENST00000568232 UNC5CLQ8IV45 518 aa18.18■□□□□ 0.5
CLK3-222ENST00000568232 NPHP3Q7Z494 1330 aa18.18■□□□□ 0.5
CLK3-222ENST00000568232 PXDNQ92626 1479 aa18.17■□□□□ 0.5
CLK3-222ENST00000568232 NEXMIFQ5QGS0 1516 aa18.17■□□□□ 0.5
CLK3-222ENST00000568232 SEPT12Q8IYM1 358 aa18.16■□□□□ 0.5
CLK3-222ENST00000568232 HRCP23327 699 aa18.15■□□□□ 0.5
CLK3-222ENST00000568232 MARF1Q9Y4F3 1742 aaKnown RBP18.15■□□□□ 0.5
CLK3-222ENST00000568232 SLIT2O94813 1529 aa18.13■□□□□ 0.49
CLK3-222ENST00000568232 SPHKAPQ2M3C7 1700 aa18.13■□□□□ 0.49
CLK3-222ENST00000568232 RNF39Q9H2S5 420 aa18.13■□□□□ 0.49
CLK3-222ENST00000568232 BRWD3Q6RI45 1802 aa18.13■□□□□ 0.49
CLK3-222ENST00000568232 ROCK1Q13464 1354 aa18.13■□□□□ 0.49
CLK3-222ENST00000568232 NUTM2FA1L443 756 aa18.12■□□□□ 0.49
CLK3-222ENST00000568232 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.11■□□□□ 0.49
CLK3-222ENST00000568232 CLTCL1P53675 1640 aa18.1■□□□□ 0.49
CLK3-222ENST00000568232 ITGAEP38570 1179 aa18.1■□□□□ 0.49
CLK3-222ENST00000568232 HFM1A2PYH4 1435 aa18.09■□□□□ 0.49
CLK3-222ENST00000568232 KRT27Q7Z3Y8 459 aa18.09■□□□□ 0.49
CLK3-222ENST00000568232 VGFO15240 615 aaPredicted RBP18.08■□□□□ 0.48
CLK3-222ENST00000568232 ONECUT3O60422 494 aaPredicted RBP18.07■□□□□ 0.48
CLK3-222ENST00000568232 PLEKHG5O94827 1062 aa18.07■□□□□ 0.48
CLK3-222ENST00000568232 CCDC9Q9Y3X0 531 aaKnown RBP18.07■□□□□ 0.48
CLK3-222ENST00000568232 PRAG1Q86YV5 1406 aa18.06■□□□□ 0.48
CLK3-222ENST00000568232 SPATA31A3Q5VYP0 1347 aa18.06■□□□□ 0.48
CLK3-222ENST00000568232 BAG6P46379 1132 aa18.06■□□□□ 0.48
CLK3-222ENST00000568232 VPS72Q15906 364 aa18.06■□□□□ 0.48
CLK3-222ENST00000568232 CABLES1Q8TDN4 633 aa18.06■□□□□ 0.48
CLK3-222ENST00000568232 LRPPRCP42704 1394 aaKnown RBP18.05■□□□□ 0.48
CLK3-222ENST00000568232 CDC42BPGQ6DT37 1551 aa18.04■□□□□ 0.48
CLK3-222ENST00000568232 EN1Q05925 392 aaPredicted RBP18.04■□□□□ 0.48
CLK3-222ENST00000568232 R3HDM1Q15032 1099 aaKnown RBP18.04■□□□□ 0.48
CLK3-222ENST00000568232 NAIPQ13075 1403 aa18.04■□□□□ 0.48
CLK3-222ENST00000568232 HAP1P54257 671 aaPredicted RBP18.03■□□□□ 0.48
CLK3-222ENST00000568232 CACNB1Q02641 598 aaPredicted RBP18.03■□□□□ 0.48
CLK3-222ENST00000568232 WAPLQ7Z5K2 1190 aa18.03■□□□□ 0.48
CLK3-222ENST00000568232 USP32Q8NFA0 1604 aa18.02■□□□□ 0.48
CLK3-222ENST00000568232 A0A0G2JS52 829 aa18.02■□□□□ 0.48
CLK3-222ENST00000568232 MYT1Q01538 1121 aa18.02■□□□□ 0.48
CLK3-222ENST00000568232 KRT28Q7Z3Y7 464 aa18.02■□□□□ 0.48
CLK3-222ENST00000568232 FAM182BQ5T319 152 aa18.01■□□□□ 0.47
CLK3-222ENST00000568232 STK26Q9P289 416 aa18.01■□□□□ 0.47
CLK3-222ENST00000568232 KCNA4P22459 653 aa18■□□□□ 0.47
CLK3-222ENST00000568232 FAM98CQ17RN3 349 aaKnown RBP17.99■□□□□ 0.47
CLK3-222ENST00000568232 KIF1BO60333 1816 aa17.99■□□□□ 0.47
CLK3-222ENST00000568232 YY1P25490 414 aa17.98■□□□□ 0.47
CLK3-222ENST00000568232 PLEKHH1Q9ULM0 1364 aa17.97■□□□□ 0.47
CLK3-222ENST00000568232 FAM83GA6ND36 823 aa17.97■□□□□ 0.47
CLK3-222ENST00000568232 CCDC144AA2RUR9 1427 aa17.97■□□□□ 0.47
CLK3-222ENST00000568232 RPGRIP1LQ68CZ1 1315 aa17.97■□□□□ 0.47
CLK3-222ENST00000568232 PLCH1Q4KWH8 1693 aa17.96■□□□□ 0.47
CLK3-222ENST00000568232 EZH2Q15910 746 aaKnown RBP17.95■□□□□ 0.46
CLK3-222ENST00000568232 LMOD2Q6P5Q4 547 aa17.95■□□□□ 0.46
CLK3-222ENST00000568232 TNS3Q68CZ2 1445 aa17.94■□□□□ 0.46
CLK3-222ENST00000568232 ADGRF5Q8IZF2 1346 aa17.93■□□□□ 0.46
CLK3-222ENST00000568232 TMEM132EQ6IEE7 984 aa17.92■□□□□ 0.46
CLK3-222ENST00000568232 NWD2Q9ULI1 1742 aa17.92■□□□□ 0.46
CLK3-222ENST00000568232 PSME1Q06323 249 aa17.91■□□□□ 0.46
CLK3-222ENST00000568232 BTG4Q9NY30 223 aa17.91■□□□□ 0.46
CLK3-222ENST00000568232 PHF8Q9UPP1 1060 aa17.91■□□□□ 0.46
CLK3-222ENST00000568232 PPLO60437 1756 aa17.9■□□□□ 0.46
CLK3-222ENST00000568232 KIF1AQ12756 1690 aa17.9■□□□□ 0.46
CLK3-222ENST00000568232 TECPR2O15040 1411 aa17.89■□□□□ 0.46
CLK3-222ENST00000568232 FMN2Q9NZ56 1722 aa17.89■□□□□ 0.46
CLK3-222ENST00000568232 CAMKK2Q96RR4 588 aa17.88■□□□□ 0.45
CLK3-222ENST00000568232 RGPD1P0DJD0 1748 aa17.88■□□□□ 0.45
CLK3-222ENST00000568232 ABCC11Q96J66 1382 aa17.88■□□□□ 0.45
CLK3-222ENST00000568232 SBNO1A3KN83 1393 aa17.87■□□□□ 0.45
CLK3-222ENST00000568232 DISP2A7MBM2 1401 aa17.87■□□□□ 0.45
CLK3-222ENST00000568232 ABCA3Q99758 1704 aa17.86■□□□□ 0.45
CLK3-222ENST00000568232 TRIM37O94972 964 aa17.86■□□□□ 0.45
CLK3-222ENST00000568232 PPARGC1BQ86YN6 1023 aaKnown RBP17.86■□□□□ 0.45
CLK3-222ENST00000568232 NRAPQ86VF7 1730 aa17.86■□□□□ 0.45
CLK3-222ENST00000568232 ARHGEF10O15013 1369 aa17.85■□□□□ 0.45
CLK3-222ENST00000568232 RGL3Q3MIN7 710 aa17.85■□□□□ 0.45
CLK3-222ENST00000568232 TNS1Q9HBL0 1735 aaKnown RBP17.84■□□□□ 0.45
CLK3-222ENST00000568232 SPATA31A5Q5VU36 1347 aa17.84■□□□□ 0.45
CLK3-222ENST00000568232 SPATA31A7Q8IWB4 1347 aa17.84■□□□□ 0.45
CLK3-222ENST00000568232 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
CLK3-222ENST00000568232 RGPD8O14715 1765 aaPredicted RBP17.84■□□□□ 0.45
CLK3-222ENST00000568232 NRXN1Q9ULB1 1477 aa17.83■□□□□ 0.45
CLK3-222ENST00000568232 RRBP1Q9P2E9 1410 aaKnown RBP17.83■□□□□ 0.45
CLK3-222ENST00000568232 APBA3O96018 575 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms