RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF697Q5TEC3 545 aa7.08□□□□□ -1.28
VPS35-207ENST00000568191 REPIN1Q9BWE0 567 aaKnown RBP7.08□□□□□ -1.28
VPS35-207ENST00000568191 SPDYE5A6NIY4 337 aa7.07□□□□□ -1.28
VPS35-207ENST00000568191 C6orf229H3BNL8 230 aa7.07□□□□□ -1.28
VPS35-207ENST00000568191 LIAT1Q6ZQX7 453 aa7.07□□□□□ -1.28
VPS35-207ENST00000568191 SPIRE2Q8WWL2 714 aa7.07□□□□□ -1.28
VPS35-207ENST00000568191 SLC24A3Q9HC58 644 aa7.07□□□□□ -1.28
VPS35-207ENST00000568191 PDE4DQ08499 809 aa7.06□□□□□ -1.28
VPS35-207ENST00000568191 RETREG3Q86VR2 466 aa7.06□□□□□ -1.28
VPS35-207ENST00000568191 PARP9Q8IXQ6 854 aa7.06□□□□□ -1.28
VPS35-207ENST00000568191 GJA5P36382 358 aa7.05□□□□□ -1.28
VPS35-207ENST00000568191 MMP16P51512 607 aa7.05□□□□□ -1.28
VPS35-207ENST00000568191 CCDC24Q8N4L8 307 aa7.05□□□□□ -1.28
VPS35-207ENST00000568191 DXOO77932 396 aaKnown RBP7.04□□□□□ -1.28
VPS35-207ENST00000568191 PRR20EP86478 221 aa7.04□□□□□ -1.28
VPS35-207ENST00000568191 PRR20CP86479 221 aa7.04□□□□□ -1.28
VPS35-207ENST00000568191 PRR20DP86480 221 aa7.04□□□□□ -1.28
VPS35-207ENST00000568191 PRR20BP86481 221 aa7.04□□□□□ -1.28
VPS35-207ENST00000568191 PRR20AP86496 221 aa7.04□□□□□ -1.28
VPS35-207ENST00000568191 PRDM9Q9NQV7 894 aa7.04□□□□□ -1.28
VPS35-207ENST00000568191 JUNDP17535 347 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 GUCA2AQ02747 115 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 MTMR2Q13614 643 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 PKDCCQ504Y2 493 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 TRAF7Q6Q0C0 670 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 HLA-CQ95604 372 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 TBC1D2Q9BYX2 928 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 RSPH6AQ9H0K4 717 aa7.03□□□□□ -1.28
VPS35-207ENST00000568191 MOXD2PA6NHM9 499 aa7.02□□□□□ -1.29
VPS35-207ENST00000568191 FOXC1Q12948 553 aa7.02□□□□□ -1.29
VPS35-207ENST00000568191 PLA2G2CQ5R387 149 aa7.02□□□□□ -1.29
VPS35-207ENST00000568191 DGAT1O75907 488 aa7.01□□□□□ -1.29
VPS35-207ENST00000568191 MS4A1P11836 297 aa7.01□□□□□ -1.29
VPS35-207ENST00000568191 NDUFV2P19404 249 aa7.01□□□□□ -1.29
VPS35-207ENST00000568191 EMID1Q96A84 441 aaPredicted RBP7.01□□□□□ -1.29
VPS35-207ENST00000568191 RIC3Q7Z5B4 369 aa7□□□□□ -1.29
VPS35-207ENST00000568191 CYP4X1Q8N118 509 aa7□□□□□ -1.29
VPS35-207ENST00000568191 SYMPKQ92797 1274 aaKnown RBP7□□□□□ -1.29
VPS35-207ENST00000568191 ZBTB3Q9H5J0 574 aa7□□□□□ -1.29
VPS35-207ENST00000568191 TNFRSF10AO00220 468 aa6.99□□□□□ -1.29
VPS35-207ENST00000568191 SPTLC1O15269 473 aa6.99□□□□□ -1.29
VPS35-207ENST00000568191 TRIM32Q13049 653 aa6.99□□□□□ -1.29
VPS35-207ENST00000568191 RSBN1LQ6PCB5 846 aaPredicted RBP6.99□□□□□ -1.29
VPS35-207ENST00000568191 PRR7Q8TB68 274 aa6.99□□□□□ -1.29
VPS35-207ENST00000568191 NUDT12Q9BQG2 462 aa6.99□□□□□ -1.29
VPS35-207ENST00000568191 ATP1B4Q9UN42 357 aaPredicted RBP6.99□□□□□ -1.29
VPS35-207ENST00000568191 PCDHGC3Q9UN70 934 aa6.99□□□□□ -1.29
VPS35-207ENST00000568191 NUTM2BA6NNL0 878 aaPredicted RBP6.98□□□□□ -1.29
VPS35-207ENST00000568191 NUTM2EB1AL46 878 aaPredicted RBP6.98□□□□□ -1.29
VPS35-207ENST00000568191 GDF9O60383 454 aa6.98□□□□□ -1.29
VPS35-207ENST00000568191 CCNYL3P0C7X3 344 aa6.98□□□□□ -1.29
VPS35-207ENST00000568191 NUTM2DQ5VT03 806 aaPredicted RBP6.98□□□□□ -1.29
VPS35-207ENST00000568191 PRPF38BQ5VTL8 546 aaKnown RBP6.98□□□□□ -1.29
VPS35-207ENST00000568191 DESI1Q6ICB0 168 aa6.98□□□□□ -1.29
VPS35-207ENST00000568191 NUTM2AQ8IVF1 878 aaPredicted RBP6.98□□□□□ -1.29
VPS35-207ENST00000568191 TTC24A2A3L6 582 aaPredicted RBP6.97□□□□□ -1.29
VPS35-207ENST00000568191 FAM187AA6NFU0 413 aa6.97□□□□□ -1.29
VPS35-207ENST00000568191 WNT7BP56706 349 aa6.97□□□□□ -1.29
VPS35-207ENST00000568191 PTPRNQ16849 979 aa6.97□□□□□ -1.29
VPS35-207ENST00000568191 TRIM67Q6ZTA4 783 aa6.97□□□□□ -1.29
VPS35-207ENST00000568191 WNT7AO00755 349 aa6.96□□□□□ -1.3
VPS35-207ENST00000568191 DDRGK1Q96HY6 314 aa6.96□□□□□ -1.3
VPS35-207ENST00000568191 CSPP1Q1MSJ5 1256 aa6.95□□□□□ -1.3
VPS35-207ENST00000568191 TUSC1Q2TAM9 212 aa6.95□□□□□ -1.3
VPS35-207ENST00000568191 PKD2L1Q9P0L9 805 aa6.95□□□□□ -1.3
VPS35-207ENST00000568191 MYSM1Q5VVJ2 828 aa6.94□□□□□ -1.3
VPS35-207ENST00000568191 SNIP1Q8TAD8 396 aaKnown RBP6.94□□□□□ -1.3
VPS35-207ENST00000568191 EVA1BQ9NVM1 165 aa6.94□□□□□ -1.3
VPS35-207ENST00000568191 HRCP23327 699 aa6.93□□□□□ -1.3
VPS35-207ENST00000568191 CTHP32929 405 aa6.93□□□□□ -1.3
VPS35-207ENST00000568191 CLK2P49760 499 aaKnown RBP6.93□□□□□ -1.3
VPS35-207ENST00000568191 KCNH2Q12809 1159 aa6.93□□□□□ -1.3
VPS35-207ENST00000568191 HELBQ8NG08 1087 aaPredicted RBP6.93□□□□□ -1.3
VPS35-207ENST00000568191 TSC1Q92574 1164 aa6.93□□□□□ -1.3
VPS35-207ENST00000568191 PCDHB15Q9Y5E8 787 aa6.93□□□□□ -1.3
VPS35-207ENST00000568191 RC3H1Q5TC82 1133 aaKnown RBP6.92□□□□□ -1.3
VPS35-207ENST00000568191 KDM4CQ9H3R0 1056 aa6.92□□□□□ -1.3
VPS35-207ENST00000568191 LYPD8Q6UX82 237 aa6.91□□□□□ -1.3
VPS35-207ENST00000568191 EHBP1Q8NDI1 1231 aa6.91□□□□□ -1.3
VPS35-207ENST00000568191 POLR3EQ9NVU0 708 aa6.91□□□□□ -1.3
VPS35-207ENST00000568191 TOR4AQ9NXH8 423 aa6.91□□□□□ -1.3
VPS35-207ENST00000568191 LCE2BO14633 110 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 MYT1Q01538 1121 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 SKIV2LQ15477 1246 aaKnown RBP6.9□□□□□ -1.3
VPS35-207ENST00000568191 CTC1Q2NKJ3 1217 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 ARMC2Q8NEN0 867 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 CABLES1Q8TDN4 633 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 MRGPRX2Q96LB1 330 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 UNC93B1Q9H1C4 597 aa6.9□□□□□ -1.3
VPS35-207ENST00000568191 LILRB3O75022 631 aa6.89□□□□□ -1.31
VPS35-207ENST00000568191 ZNF787Q6DD87 383 aa6.89□□□□□ -1.31
VPS35-207ENST00000568191 LIMD1Q9UGP4 676 aa6.89□□□□□ -1.31
VPS35-207ENST00000568191 PLEKHG3A1L390 1219 aa6.88□□□□□ -1.31
VPS35-207ENST00000568191 CFAP99D6REC4 459 aa6.88□□□□□ -1.31
VPS35-207ENST00000568191 AXIN1O15169 862 aa6.88□□□□□ -1.31
VPS35-207ENST00000568191 PTCRAQ6ISU1 281 aaPredicted RBP6.88□□□□□ -1.31
VPS35-207ENST00000568191 GPBP1L1Q9HC44 474 aaPredicted RBP6.88□□□□□ -1.31
VPS35-207ENST00000568191 SH3D19Q5HYK7 790 aa6.87□□□□□ -1.31
VPS35-207ENST00000568191 BAP1Q92560 729 aa6.87□□□□□ -1.31
VPS35-207ENST00000568191 WASF2Q9Y6W5 498 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms