RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 WAPLQ7Z5K2 1190 aa23.82■■□□□ 1.4
CLN3-229ENST00000567963 LRPPRCP42704 1394 aaKnown RBP23.82■■□□□ 1.4
CLN3-229ENST00000567963 ABCC11Q96J66 1382 aa23.82■■□□□ 1.4
CLN3-229ENST00000567963 RAB3GAP2Q9H2M9 1393 aa23.82■■□□□ 1.4
CLN3-229ENST00000567963 CDC42BPGQ6DT37 1551 aa23.8■■□□□ 1.4
CLN3-229ENST00000567963 AFF2P51816 1311 aa23.8■■□□□ 1.4
CLN3-229ENST00000567963 RXRBP28702 533 aa23.78■■□□□ 1.4
CLN3-229ENST00000567963 ESCO1Q5FWF5 840 aa23.78■■□□□ 1.4
CLN3-229ENST00000567963 C8orf37Q96NL8 207 aa23.77■■□□□ 1.4
CLN3-229ENST00000567963 C14orf93Q9H972 538 aaKnown RBP23.77■■□□□ 1.4
CLN3-229ENST00000567963 KNDC1Q76NI1 1749 aa23.77■■□□□ 1.4
CLN3-229ENST00000567963 YTHDC2Q9H6S0 1430 aaKnown RBP23.76■■□□□ 1.39
CLN3-229ENST00000567963 PLEKHH1Q9ULM0 1364 aa23.76■■□□□ 1.39
CLN3-229ENST00000567963 NRXN1Q9ULB1 1477 aa23.75■■□□□ 1.39
CLN3-229ENST00000567963 NPHP3Q7Z494 1330 aa23.74■■□□□ 1.39
CLN3-229ENST00000567963 SIRT1Q96EB6 747 aa23.74■■□□□ 1.39
CLN3-229ENST00000567963 ADAMTS2O95450 1211 aa23.73■■□□□ 1.39
CLN3-229ENST00000567963 CFAP70Q5T0N1 1121 aa23.73■■□□□ 1.39
CLN3-229ENST00000567963 MYOM2P54296 1465 aa23.72■■□□□ 1.39
CLN3-229ENST00000567963 NUTM2FA1L443 756 aa23.72■■□□□ 1.39
CLN3-229ENST00000567963 FOXO3O43524 673 aa23.71■■□□□ 1.39
CLN3-229ENST00000567963 QTRT2Q9H974 415 aaKnown RBP23.71■■□□□ 1.39
CLN3-229ENST00000567963 NGLY1Q96IV0 654 aa23.7■■□□□ 1.38
CLN3-229ENST00000567963 DHX57Q6P158 1386 aaKnown RBP23.7■■□□□ 1.38
CLN3-229ENST00000567963 CDK12Q9NYV4 1490 aaPredicted RBP23.7■■□□□ 1.38
CLN3-229ENST00000567963 PXDNQ92626 1479 aa23.69■■□□□ 1.38
CLN3-229ENST00000567963 COL22A1Q8NFW1 1626 aaPredicted RBP23.68■■□□□ 1.38
CLN3-229ENST00000567963 HRCP23327 699 aa23.67■■□□□ 1.38
CLN3-229ENST00000567963 XPCQ01831 940 aaPredicted RBP23.67■■□□□ 1.38
CLN3-229ENST00000567963 FMN2Q9NZ56 1722 aa23.67■■□□□ 1.38
CLN3-229ENST00000567963 RBM6P78332 1123 aaKnown RBP23.66■■□□□ 1.38
CLN3-229ENST00000567963 UPF1Q92900 1129 aaKnown RBP eCLIP23.66■■□□□ 1.38
CLN3-229ENST00000567963 FNBP4Q8N3X1 1017 aaPredicted RBP23.63■■□□□ 1.37
CLN3-229ENST00000567963 PRAM1Q96QH2 718 aa23.63■■□□□ 1.37
CLN3-229ENST00000567963 USP21Q9UK80 565 aa23.62■■□□□ 1.37
CLN3-229ENST00000567963 SAFB2Q14151 953 aaKnown RBP eCLIP23.61■■□□□ 1.37
CLN3-229ENST00000567963 DCAF11Q8TEB1 546 aa23.6■■□□□ 1.37
CLN3-229ENST00000567963 KDM2AQ9Y2K7 1162 aa23.6■■□□□ 1.37
CLN3-229ENST00000567963 KIF1AQ12756 1690 aa23.6■■□□□ 1.37
CLN3-229ENST00000567963 RGPD8O14715 1765 aaPredicted RBP23.59■■□□□ 1.37
CLN3-229ENST00000567963 RGS12O14924 1447 aa23.59■■□□□ 1.37
CLN3-229ENST00000567963 DLC1Q96QB1 1528 aa23.59■■□□□ 1.37
CLN3-229ENST00000567963 ADGRB1O14514 1584 aa23.58■■□□□ 1.37
CLN3-229ENST00000567963 SPATA31A3Q5VYP0 1347 aa23.58■■□□□ 1.37
CLN3-229ENST00000567963 KRT28Q7Z3Y7 464 aa23.58■■□□□ 1.37
CLN3-229ENST00000567963 STAC3Q96MF2 364 aa23.58■■□□□ 1.37
CLN3-229ENST00000567963 POGKQ9P215 609 aa23.58■■□□□ 1.37
CLN3-229ENST00000567963 TRPC5Q9UL62 973 aaPredicted RBP23.58■■□□□ 1.37
CLN3-229ENST00000567963 PHF8Q9UPP1 1060 aa23.57■■□□□ 1.36
CLN3-229ENST00000567963 MARF1Q9Y4F3 1742 aaKnown RBP23.56■■□□□ 1.36
CLN3-229ENST00000567963 TRAK1Q9UPV9 953 aa23.56■■□□□ 1.36
CLN3-229ENST00000567963 BCL9LQ86UU0 1499 aa23.53■■□□□ 1.36
CLN3-229ENST00000567963 PSME1Q06323 249 aa23.53■■□□□ 1.36
CLN3-229ENST00000567963 ATRNO75882 1429 aa23.53■■□□□ 1.36
CLN3-229ENST00000567963 ADGRB2O60241 1585 aa23.5■■□□□ 1.35
CLN3-229ENST00000567963 ANKARQ7Z5J8 1434 aa23.5■■□□□ 1.35
CLN3-229ENST00000567963 HIRIP3Q9BW71 556 aaPredicted RBP23.49■■□□□ 1.35
CLN3-229ENST00000567963 USP32Q8NFA0 1604 aa23.49■■□□□ 1.35
CLN3-229ENST00000567963 TNS3Q68CZ2 1445 aa23.48■■□□□ 1.35
CLN3-229ENST00000567963 PMFBP1Q8TBY8 1022 aa23.48■■□□□ 1.35
CLN3-229ENST00000567963 SBNO1A3KN83 1393 aa23.48■■□□□ 1.35
CLN3-229ENST00000567963 MINK1Q8N4C8 1332 aaPredicted RBP23.46■■□□□ 1.35
CLN3-229ENST00000567963 GJD4Q96KN9 370 aaPredicted RBP23.45■■□□□ 1.34
CLN3-229ENST00000567963 SLIT2O94813 1529 aa23.44■■□□□ 1.34
CLN3-229ENST00000567963 UNC5CLQ8IV45 518 aa23.44■■□□□ 1.34
CLN3-229ENST00000567963 CABLES1Q8TDN4 633 aa23.44■■□□□ 1.34
CLN3-229ENST00000567963 WASLO00401 505 aaPredicted RBP23.43■■□□□ 1.34
CLN3-229ENST00000567963 LMOD2Q6P5Q4 547 aa23.43■■□□□ 1.34
CLN3-229ENST00000567963 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.43■■□□□ 1.34
CLN3-229ENST00000567963 HAP1P54257 671 aaPredicted RBP23.43■■□□□ 1.34
CLN3-229ENST00000567963 PRR36Q9H6K5 1346 aa23.42■■□□□ 1.34
CLN3-229ENST00000567963 ARHGEF10O15013 1369 aa23.42■■□□□ 1.34
CLN3-229ENST00000567963 EIF3AQ14152 1382 aaKnown RBP23.42■■□□□ 1.34
CLN3-229ENST00000567963 ATAD2Q6PL18 1390 aa23.42■■□□□ 1.34
CLN3-229ENST00000567963 TULP4Q9NRJ4 1543 aa23.41■■□□□ 1.34
CLN3-229ENST00000567963 PLEKHG5O94827 1062 aa23.4■■□□□ 1.34
CLN3-229ENST00000567963 EP400Q96L91 3159 aa23.4■■□□□ 1.34
CLN3-229ENST00000567963 ARHGEF28Q8N1W1 1705 aaKnown RBP23.39■■□□□ 1.33
CLN3-229ENST00000567963 GPRASP1Q5JY77 1395 aa23.37■■□□□ 1.33
CLN3-229ENST00000567963 TRPM3Q9HCF6 1732 aaPredicted RBP23.37■■□□□ 1.33
CLN3-229ENST00000567963 ABCA3Q99758 1704 aa23.36■■□□□ 1.33
CLN3-229ENST00000567963 RALGAPBQ86X10 1494 aa23.36■■□□□ 1.33
CLN3-229ENST00000567963 GLI3P10071 1580 aa23.35■■□□□ 1.33
CLN3-229ENST00000567963 KIAA1210Q9ULL0 1709 aa23.34■■□□□ 1.33
CLN3-229ENST00000567963 FAM83GA6ND36 823 aa23.34■■□□□ 1.33
CLN3-229ENST00000567963 NGDNQ8NEJ9 315 aaKnown RBP23.34■■□□□ 1.33
CLN3-229ENST00000567963 ALS2Q96Q42 1657 aa23.33■■□□□ 1.33
CLN3-229ENST00000567963 VPS72Q15906 364 aa23.33■■□□□ 1.33
CLN3-229ENST00000567963 NUDT16Q96DE0 195 aaKnown RBP23.33■■□□□ 1.33
CLN3-229ENST00000567963 NWD2Q9ULI1 1742 aa23.33■■□□□ 1.32
CLN3-229ENST00000567963 PLCH1Q4KWH8 1693 aa23.33■■□□□ 1.32
CLN3-229ENST00000567963 NBPF1Q3BBV0 1214 aa23.31■■□□□ 1.32
CLN3-229ENST00000567963 CDK19Q9BWU1 502 aa23.31■■□□□ 1.32
CLN3-229ENST00000567963 ATP7BP35670 1465 aa23.31■■□□□ 1.32
CLN3-229ENST00000567963 CCDC125Q86Z20 511 aa23.3■■□□□ 1.32
CLN3-229ENST00000567963 ITSN1Q15811 1721 aa23.29■■□□□ 1.32
CLN3-229ENST00000567963 PAK3O75914 559 aaPredicted RBP23.29■■□□□ 1.32
CLN3-229ENST00000567963 ONECUT3O60422 494 aaPredicted RBP23.28■■□□□ 1.32
CLN3-229ENST00000567963 CCDC9Q9Y3X0 531 aaKnown RBP23.27■■□□□ 1.32
CLN3-229ENST00000567963 SEPT12Q8IYM1 358 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms