RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SCAF1Q9H7N4 1312 aaKnown RBP27.99■■■□□ 2.07
CLN3-225ENST00000566824 RALGAPBQ86X10 1494 aa27.98■■■□□ 2.07
CLN3-225ENST00000566824 ROCK2O75116 1388 aaKnown RBP27.97■■■□□ 2.07
CLN3-225ENST00000566824 DCCP43146 1447 aa27.96■■■□□ 2.07
CLN3-225ENST00000566824 ATF3P18847 181 aa27.96■■■□□ 2.07
CLN3-225ENST00000566824 POGKQ9P215 609 aa27.96■■■□□ 2.07
CLN3-225ENST00000566824 SLAIN2Q9P270 581 aa27.96■■■□□ 2.07
CLN3-225ENST00000566824 TIMELESSQ9UNS1 1208 aa27.96■■■□□ 2.07
CLN3-225ENST00000566824 MST1RQ04912 1400 aa27.95■■■□□ 2.06
CLN3-225ENST00000566824 GPRASP1Q5JY77 1395 aa27.95■■■□□ 2.06
CLN3-225ENST00000566824 CADPS2Q86UW7 1296 aa27.94■■■□□ 2.06
CLN3-225ENST00000566824 CDC42BPGQ6DT37 1551 aa27.94■■■□□ 2.06
CLN3-225ENST00000566824 ROBO1Q9Y6N7 1651 aa27.94■■■□□ 2.06
CLN3-225ENST00000566824 MINK1Q8N4C8 1332 aaPredicted RBP27.91■■■□□ 2.06
CLN3-225ENST00000566824 HIRIP3Q9BW71 556 aaPredicted RBP27.91■■■□□ 2.06
CLN3-225ENST00000566824 FMN2Q9NZ56 1722 aa27.9■■■□□ 2.06
CLN3-225ENST00000566824 ADGRB2O60241 1585 aa27.88■■■□□ 2.05
CLN3-225ENST00000566824 QRICH2Q9H0J4 1663 aa27.87■■■□□ 2.05
CLN3-225ENST00000566824 RGPD8O14715 1765 aaPredicted RBP27.87■■■□□ 2.05
CLN3-225ENST00000566824 NUTM2FA1L443 756 aa27.87■■■□□ 2.05
CLN3-225ENST00000566824 CARD11Q9BXL7 1154 aa27.87■■■□□ 2.05
CLN3-225ENST00000566824 C1orf167Q5SNV9 1468 aa27.86■■■□□ 2.05
CLN3-225ENST00000566824 HSPA1LP34931 641 aa27.84■■■□□ 2.05
CLN3-225ENST00000566824 CENPJQ9HC77 1338 aaPredicted RBP27.83■■■□□ 2.05
CLN3-225ENST00000566824 BRINP3Q76B58 766 aa27.83■■■□□ 2.05
CLN3-225ENST00000566824 USP32Q8NFA0 1604 aa27.82■■■□□ 2.04
CLN3-225ENST00000566824 ORAI2Q96SN7 254 aa27.82■■■□□ 2.04
CLN3-225ENST00000566824 WASLO00401 505 aaPredicted RBP27.77■■■□□ 2.04
CLN3-225ENST00000566824 DDX17Q92841 729 aaKnown RBP27.77■■■□□ 2.04
CLN3-225ENST00000566824 PRR36Q9H6K5 1346 aa27.76■■■□□ 2.03
CLN3-225ENST00000566824 PHLPP1O60346 1717 aa27.75■■■□□ 2.03
CLN3-225ENST00000566824 TULP4Q9NRJ4 1543 aa27.75■■■□□ 2.03
CLN3-225ENST00000566824 NHSL1Q5SYE7 1610 aa27.74■■■□□ 2.03
CLN3-225ENST00000566824 ESCO1Q5FWF5 840 aa27.73■■■□□ 2.03
CLN3-225ENST00000566824 CDK19Q9BWU1 502 aa27.73■■■□□ 2.03
CLN3-225ENST00000566824 EIF3AQ14152 1382 aaKnown RBP27.73■■■□□ 2.03
CLN3-225ENST00000566824 AHDC1Q5TGY3 1603 aaPredicted RBP27.72■■■□□ 2.03
CLN3-225ENST00000566824 COL16A1Q07092 1604 aaPredicted RBP27.7■■■□□ 2.03
CLN3-225ENST00000566824 ANKARQ7Z5J8 1434 aa27.69■■■□□ 2.02
CLN3-225ENST00000566824 USP47Q96K76 1375 aa27.69■■■□□ 2.02
CLN3-225ENST00000566824 ST20-MTHFSA0A0A6YYL1 179 aa27.68■■■□□ 2.02
CLN3-225ENST00000566824 ATP7BP35670 1465 aa27.68■■■□□ 2.02
CLN3-225ENST00000566824 CABP2Q9NPB3 220 aa27.67■■■□□ 2.02
CLN3-225ENST00000566824 TOPAZ1Q8N9V7 1692 aa27.66■■■□□ 2.02
CLN3-225ENST00000566824 NUDT16Q96DE0 195 aaKnown RBP27.66■■■□□ 2.02
CLN3-225ENST00000566824 KIF1AQ12756 1690 aa27.65■■■□□ 2.02
CLN3-225ENST00000566824 TESK2Q96S53 571 aa27.65■■■□□ 2.02
CLN3-225ENST00000566824 PMFBP1Q8TBY8 1022 aa27.64■■■□□ 2.01
CLN3-225ENST00000566824 PHF8Q9UPP1 1060 aa27.64■■■□□ 2.01
CLN3-225ENST00000566824 FOXO3O43524 673 aa27.63■■■□□ 2.01
CLN3-225ENST00000566824 SBNO2Q9Y2G9 1366 aa27.63■■■□□ 2.01
CLN3-225ENST00000566824 ITSN1Q15811 1721 aa27.62■■■□□ 2.01
CLN3-225ENST00000566824 SRPK2P78362 688 aaKnown RBP27.62■■■□□ 2.01
CLN3-225ENST00000566824 XPCQ01831 940 aaPredicted RBP27.62■■■□□ 2.01
CLN3-225ENST00000566824 EVC2Q86UK5 1308 aa27.6■■■□□ 2.01
CLN3-225ENST00000566824 PXDNQ92626 1479 aa27.6■■■□□ 2.01
CLN3-225ENST00000566824 SOS2Q07890 1332 aaPredicted RBP27.57■■■□□ 2
CLN3-225ENST00000566824 NPHP3Q7Z494 1330 aa27.55■■■□□ 2
CLN3-225ENST00000566824 CCDC61Q9Y6R9 512 aa27.54■■■□□ 2
CLN3-225ENST00000566824 DISP3Q9P2K9 1392 aa27.54■■■□□ 2
CLN3-225ENST00000566824 HSPA5P11021 654 aaKnown RBP27.53■■■□□ 2
CLN3-225ENST00000566824 PPIP5K1Q6PFW1 1433 aa27.53■■■□□ 2
CLN3-225ENST00000566824 KRT28Q7Z3Y7 464 aa27.52■■■□□ 2
CLN3-225ENST00000566824 SHPRHQ149N8 1683 aa27.51■■□□□ 1.99
CLN3-225ENST00000566824 TRPM3Q9HCF6 1732 aaPredicted RBP27.5■■□□□ 1.99
CLN3-225ENST00000566824 PLEKHG3A1L390 1219 aa27.5■■□□□ 1.99
CLN3-225ENST00000566824 CABP1Q9NZU7 370 aa27.5■■□□□ 1.99
CLN3-225ENST00000566824 JCADQ9P266 1359 aa27.49■■□□□ 1.99
CLN3-225ENST00000566824 ACEP12821 1306 aa27.48■■□□□ 1.99
CLN3-225ENST00000566824 EIF4G2P78344 907 aaKnown RBP eCLIP27.48■■□□□ 1.991e-9■■■■□ 22.4
CLN3-225ENST00000566824 NGDNQ8NEJ9 315 aaKnown RBP27.48■■□□□ 1.99
CLN3-225ENST00000566824 LRRC59Q96AG4 307 aaKnown RBP27.48■■□□□ 1.99
CLN3-225ENST00000566824 POLR3AO14802 1390 aaPredicted RBP27.47■■□□□ 1.99
CLN3-225ENST00000566824 PNPLA6Q8IY17 1366 aa27.47■■□□□ 1.99
CLN3-225ENST00000566824 PSME1Q06323 249 aa27.47■■□□□ 1.99
CLN3-225ENST00000566824 ATAD2Q6PL18 1390 aa27.44■■□□□ 1.98
CLN3-225ENST00000566824 SPATA31A3Q5VYP0 1347 aa27.44■■□□□ 1.98
CLN3-225ENST00000566824 AKAP12Q02952 1782 aa27.43■■□□□ 1.98
CLN3-225ENST00000566824 TMF1P82094 1093 aa27.42■■□□□ 1.98
CLN3-225ENST00000566824 ALS2Q96Q42 1657 aa27.42■■□□□ 1.98
CLN3-225ENST00000566824 MED1Q15648 1581 aaPredicted RBP27.41■■□□□ 1.98
CLN3-225ENST00000566824 LRP6O75581 1613 aa27.41■■□□□ 1.98
CLN3-225ENST00000566824 COL22A1Q8NFW1 1626 aaPredicted RBP27.41■■□□□ 1.98
CLN3-225ENST00000566824 SLC12A5Q9H2X9 1139 aa27.41■■□□□ 1.98
CLN3-225ENST00000566824 SBNO1A3KN83 1393 aa27.4■■□□□ 1.98
CLN3-225ENST00000566824 CD163L1Q9NR16 1453 aa27.4■■□□□ 1.98
CLN3-225ENST00000566824 TNS3Q68CZ2 1445 aa27.4■■□□□ 1.98
CLN3-225ENST00000566824 PUS7Q96PZ0 661 aaKnown RBP27.39■■□□□ 1.97
CLN3-225ENST00000566824 C11orf95C9JLR9 678 aaPredicted RBP27.38■■□□□ 1.97
CLN3-225ENST00000566824 TMC1Q8TDI8 760 aa27.38■■□□□ 1.97
CLN3-225ENST00000566824 CPSF1Q10570 1443 aaKnown RBP27.36■■□□□ 1.97
CLN3-225ENST00000566824 MYOM1P52179 1685 aa27.36■■□□□ 1.97
CLN3-225ENST00000566824 NUTM2BA6NNL0 878 aaPredicted RBP27.36■■□□□ 1.97
CLN3-225ENST00000566824 NUTM2EB1AL46 878 aaPredicted RBP27.36■■□□□ 1.97
CLN3-225ENST00000566824 SLC24A1O60721 1099 aa27.36■■□□□ 1.97
CLN3-225ENST00000566824 NUTM2AQ8IVF1 878 aaPredicted RBP27.36■■□□□ 1.97
CLN3-225ENST00000566824 USP6P35125 1406 aa27.35■■□□□ 1.97
CLN3-225ENST00000566824 PAK3O75914 559 aaPredicted RBP27.35■■□□□ 1.97
CLN3-225ENST00000566824 PLEKHG5O94827 1062 aa27.35■■□□□ 1.97
CLN3-225ENST00000566824 LMOD2Q6P5Q4 547 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms