RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 IQGAP3Q86VI3 1631 aa26.14■■□□□ 1.78
CLK3-217ENST00000566126 SF3B2Q13435 895 aaKnown RBP26.13■■□□□ 1.77
CLK3-217ENST00000566126 SLIT2O94813 1529 aa26.08■■□□□ 1.77
CLK3-217ENST00000566126 UNC5CLQ8IV45 518 aa26.07■■□□□ 1.76
CLK3-217ENST00000566126 PXDNQ92626 1479 aa26.06■■□□□ 1.76
CLK3-217ENST00000566126 SEPT12Q8IYM1 358 aa26.04■■□□□ 1.76
CLK3-217ENST00000566126 ROBO2Q9HCK4 1378 aa26.02■■□□□ 1.76
CLK3-217ENST00000566126 NPHP3Q7Z494 1330 aa26.01■■□□□ 1.75
CLK3-217ENST00000566126 YY1P25490 414 aa25.98■■□□□ 1.75
CLK3-217ENST00000566126 XPCQ01831 940 aaPredicted RBP25.98■■□□□ 1.75
CLK3-217ENST00000566126 ZNF326Q5BKZ1 582 aaKnown RBP25.98■■□□□ 1.75
CLK3-217ENST00000566126 NEXMIFQ5QGS0 1516 aa25.98■■□□□ 1.75
CLK3-217ENST00000566126 BAG6P46379 1132 aa25.97■■□□□ 1.75
CLK3-217ENST00000566126 ONECUT3O60422 494 aaPredicted RBP25.96■■□□□ 1.75
CLK3-217ENST00000566126 KRT27Q7Z3Y8 459 aa25.96■■□□□ 1.75
CLK3-217ENST00000566126 ESCO1Q5FWF5 840 aa25.95■■□□□ 1.74
CLK3-217ENST00000566126 USP32Q8NFA0 1604 aa25.93■■□□□ 1.74
CLK3-217ENST00000566126 FOXO3O43524 673 aa25.93■■□□□ 1.74
CLK3-217ENST00000566126 R3HDM1Q15032 1099 aaKnown RBP25.93■■□□□ 1.74
CLK3-217ENST00000566126 PRAG1Q86YV5 1406 aa25.93■■□□□ 1.74
CLK3-217ENST00000566126 VPS72Q15906 364 aa25.91■■□□□ 1.74
CLK3-217ENST00000566126 EN1Q05925 392 aaPredicted RBP25.9■■□□□ 1.74
CLK3-217ENST00000566126 CDC42BPGQ6DT37 1551 aa25.9■■□□□ 1.74
CLK3-217ENST00000566126 FAM50AQ14320 339 aaKnown RBP25.89■■□□□ 1.74
CLK3-217ENST00000566126 PLCH1Q4KWH8 1693 aa25.88■■□□□ 1.73
CLK3-217ENST00000566126 NUP155O75694 1391 aa25.88■■□□□ 1.73
CLK3-217ENST00000566126 HFM1A2PYH4 1435 aa25.88■■□□□ 1.73
CLK3-217ENST00000566126 NWD2Q9ULI1 1742 aa25.87■■□□□ 1.73
CLK3-217ENST00000566126 RGPD1P0DJD0 1748 aa25.86■■□□□ 1.73
CLK3-217ENST00000566126 SPATA31A3Q5VYP0 1347 aa25.85■■□□□ 1.73
CLK3-217ENST00000566126 LRPPRCP42704 1394 aaKnown RBP25.84■■□□□ 1.73
CLK3-217ENST00000566126 CLTCL1P53675 1640 aa25.83■■□□□ 1.73
CLK3-217ENST00000566126 APLP2Q06481 763 aa25.82■■□□□ 1.72
CLK3-217ENST00000566126 CCDC9Q9Y3X0 531 aaKnown RBP25.82■■□□□ 1.72
CLK3-217ENST00000566126 TNS1Q9HBL0 1735 aaKnown RBP25.8■■□□□ 1.72
CLK3-217ENST00000566126 DISP2A7MBM2 1401 aa25.8■■□□□ 1.72
CLK3-217ENST00000566126 KIF1BO60333 1816 aa25.77■■□□□ 1.72
CLK3-217ENST00000566126 LOC105371045A0A1W2PR82 267 aa25.76■■□□□ 1.71
CLK3-217ENST00000566126 NUTM2FA1L443 756 aa25.76■■□□□ 1.71
CLK3-217ENST00000566126 ROCK1Q13464 1354 aa25.76■■□□□ 1.71
CLK3-217ENST00000566126 ABCA3Q99758 1704 aa25.75■■□□□ 1.71
CLK3-217ENST00000566126 NAIPQ13075 1403 aa25.75■■□□□ 1.71
CLK3-217ENST00000566126 A0A0G2JS52 829 aa25.75■■□□□ 1.71
CLK3-217ENST00000566126 MYT1Q01538 1121 aa25.75■■□□□ 1.71
CLK3-217ENST00000566126 EZH2Q15910 746 aaKnown RBP25.75■■□□□ 1.71
CLK3-217ENST00000566126 CABLES1Q8TDN4 633 aa25.75■■□□□ 1.71
CLK3-217ENST00000566126 FAM98CQ17RN3 349 aaKnown RBP25.74■■□□□ 1.71
CLK3-217ENST00000566126 FAM182BQ5T319 152 aa25.74■■□□□ 1.71
CLK3-217ENST00000566126 CCDC144AA2RUR9 1427 aa25.73■■□□□ 1.71
CLK3-217ENST00000566126 NRAPQ86VF7 1730 aa25.73■■□□□ 1.71
CLK3-217ENST00000566126 KIF1AQ12756 1690 aa25.73■■□□□ 1.71
CLK3-217ENST00000566126 VGFO15240 615 aaPredicted RBP25.71■■□□□ 1.71
CLK3-217ENST00000566126 HAP1P54257 671 aaPredicted RBP25.71■■□□□ 1.71
CLK3-217ENST00000566126 KRT28Q7Z3Y7 464 aa25.71■■□□□ 1.71
CLK3-217ENST00000566126 TNS3Q68CZ2 1445 aa25.7■■□□□ 1.7
CLK3-217ENST00000566126 FMN2Q9NZ56 1722 aa25.68■■□□□ 1.7
CLK3-217ENST00000566126 FAM83GA6ND36 823 aa25.68■■□□□ 1.7
CLK3-217ENST00000566126 PLEKHG5O94827 1062 aa25.68■■□□□ 1.7
CLK3-217ENST00000566126 CAMKK2Q96RR4 588 aa25.68■■□□□ 1.7
CLK3-217ENST00000566126 IFFO2Q5TF58 517 aa25.66■■□□□ 1.7
CLK3-217ENST00000566126 WAPLQ7Z5K2 1190 aa25.65■■□□□ 1.7
CLK3-217ENST00000566126 ADGRB2O60241 1585 aa25.64■■□□□ 1.69
CLK3-217ENST00000566126 THSD7AQ9UPZ6 1657 aa25.64■■□□□ 1.69
CLK3-217ENST00000566126 PPLO60437 1756 aa25.64■■□□□ 1.69
CLK3-217ENST00000566126 RGPD8O14715 1765 aaPredicted RBP25.63■■□□□ 1.69
CLK3-217ENST00000566126 RREB1Q92766 1687 aa25.62■■□□□ 1.69
CLK3-217ENST00000566126 CAMTA1Q9Y6Y1 1673 aa25.61■■□□□ 1.69
CLK3-217ENST00000566126 TECPR2O15040 1411 aa25.61■■□□□ 1.69
CLK3-217ENST00000566126 NUP188Q5SRE5 1749 aa25.6■■□□□ 1.69
CLK3-217ENST00000566126 PLEKHH1Q9ULM0 1364 aa25.59■■□□□ 1.69
CLK3-217ENST00000566126 BTG4Q9NY30 223 aa25.59■■□□□ 1.69
CLK3-217ENST00000566126 SBNO1A3KN83 1393 aa25.58■■□□□ 1.69
CLK3-217ENST00000566126 RPGRIP1LQ68CZ1 1315 aa25.58■■□□□ 1.69
CLK3-217ENST00000566126 PARD3Q8TEW0 1356 aa25.57■■□□□ 1.68
CLK3-217ENST00000566126 NINLQ9Y2I6 1382 aa25.57■■□□□ 1.68
CLK3-217ENST00000566126 TRIM37O94972 964 aa25.57■■□□□ 1.68
CLK3-217ENST00000566126 PSME1Q06323 249 aa25.57■■□□□ 1.68
CLK3-217ENST00000566126 SPATA31A5Q5VU36 1347 aa25.57■■□□□ 1.68
CLK3-217ENST00000566126 SPATA31A7Q8IWB4 1347 aa25.57■■□□□ 1.68
CLK3-217ENST00000566126 DCAF8L1A6NGE4 600 aa25.56■■□□□ 1.68
CLK3-217ENST00000566126 STK26Q9P289 416 aa25.56■■□□□ 1.68
CLK3-217ENST00000566126 PPP1R1BQ9UD71 204 aaPredicted RBP25.56■■□□□ 1.68
CLK3-217ENST00000566126 COL14A1Q05707 1796 aaKnown RBP25.56■■□□□ 1.68
CLK3-217ENST00000566126 ARHGEF10O15013 1369 aa25.56■■□□□ 1.68
CLK3-217ENST00000566126 LMOD2Q6P5Q4 547 aa25.55■■□□□ 1.68
CLK3-217ENST00000566126 ZNF784Q8NCA9 323 aaPredicted RBP25.55■■□□□ 1.68
CLK3-217ENST00000566126 PHF8Q9UPP1 1060 aa25.55■■□□□ 1.68
CLK3-217ENST00000566126 KNDC1Q76NI1 1749 aa25.54■■□□□ 1.68
CLK3-217ENST00000566126 SENP3-EIF4A1A0A087X0R7 540 aa25.54■■□□□ 1.68
CLK3-217ENST00000566126 IFT172Q9UG01 1749 aa25.54■■□□□ 1.68
CLK3-217ENST00000566126 UTRNP46939 3433 aa25.53■■□□□ 1.68
CLK3-217ENST00000566126 APBA3O96018 575 aa25.53■■□□□ 1.68
CLK3-217ENST00000566126 SPON1Q9HCB6 807 aa25.53■■□□□ 1.68
CLK3-217ENST00000566126 NRXN1Q9ULB1 1477 aa25.53■■□□□ 1.68
CLK3-217ENST00000566126 KCNQ2O43526 872 aa25.5■■□□□ 1.67
CLK3-217ENST00000566126 FAM196AQ6ZSG2 479 aa25.5■■□□□ 1.67
CLK3-217ENST00000566126 ABCC11Q96J66 1382 aa25.5■■□□□ 1.67
CLK3-217ENST00000566126 NBPF8Q3BBV2 869 aa25.48■■□□□ 1.67
CLK3-217ENST00000566126 NBPF14Q5TI25 921 aa25.48■■□□□ 1.67
CLK3-217ENST00000566126 ADGRF5Q8IZF2 1346 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms