RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 C1orf167Q5SNV9 1468 aa37.32■■■■□ 3.56
NME3-208ENST00000565379 NHSL1Q5SYE7 1610 aa37.3■■■■□ 3.56
NME3-208ENST00000565379 L3MBTL2Q969R5 705 aa37.29■■■■□ 3.56
NME3-208ENST00000565379 LRPPRCP42704 1394 aaKnown RBP37.29■■■■□ 3.56
NME3-208ENST00000565379 WAPLQ7Z5K2 1190 aa37.28■■■■□ 3.56
NME3-208ENST00000565379 PLEKHH1Q9ULM0 1364 aa37.28■■■■□ 3.56
NME3-208ENST00000565379 NRXN1Q9ULB1 1477 aa37.27■■■■□ 3.56
NME3-208ENST00000565379 TECPR2O15040 1411 aa37.26■■■■□ 3.55
NME3-208ENST00000565379 SHPRHQ149N8 1683 aa37.25■■■■□ 3.55
NME3-208ENST00000565379 MEX3CQ5U5Q3 659 aaKnown RBP37.24■■■■□ 3.55
NME3-208ENST00000565379 ORAI2Q96SN7 254 aa37.24■■■■□ 3.55
NME3-208ENST00000565379 KDM2AQ9Y2K7 1162 aa37.24■■■■□ 3.55
NME3-208ENST00000565379 CFAP70Q5T0N1 1121 aa37.23■■■■□ 3.55
NME3-208ENST00000565379 YTHDC2Q9H6S0 1430 aaKnown RBP37.21■■■■□ 3.55
NME3-208ENST00000565379 ABCC11Q96J66 1382 aa37.2■■■■□ 3.55
NME3-208ENST00000565379 KNDC1Q76NI1 1749 aa37.2■■■■□ 3.55
NME3-208ENST00000565379 C14orf93Q9H972 538 aaKnown RBP37.2■■■■□ 3.55
NME3-208ENST00000565379 ZNF772Q68DY9 489 aaPredicted RBP37.19■■■■□ 3.54
NME3-208ENST00000565379 CDC42BPGQ6DT37 1551 aa37.18■■■■□ 3.54
NME3-208ENST00000565379 NUTM2BA6NNL0 878 aaPredicted RBP37.15■■■■□ 3.54
NME3-208ENST00000565379 NUTM2EB1AL46 878 aaPredicted RBP37.15■■■■□ 3.54
NME3-208ENST00000565379 NUTM2AQ8IVF1 878 aaPredicted RBP37.15■■■■□ 3.54
NME3-208ENST00000565379 NUTM2FA1L443 756 aa37.12■■■■□ 3.53
NME3-208ENST00000565379 LRRC59Q96AG4 307 aaKnown RBP37.12■■■■□ 3.53
NME3-208ENST00000565379 LAMC1P11047 1609 aa37.1■■■■□ 3.53
NME3-208ENST00000565379 PNPLA6Q8IY17 1366 aa37.1■■■■□ 3.53
NME3-208ENST00000565379 ADGRB1O14514 1584 aa37.04■■■■□ 3.52
NME3-208ENST00000565379 ESCO1Q5FWF5 840 aa37.04■■■■□ 3.52
NME3-208ENST00000565379 SOS2Q07890 1332 aaPredicted RBP37.04■■■■□ 3.52
NME3-208ENST00000565379 SAFB2Q14151 953 aaKnown RBP eCLIP37.03■■■■□ 3.52
NME3-208ENST00000565379 FMN2Q9NZ56 1722 aa37.02■■■■□ 3.52
NME3-208ENST00000565379 RXRBP28702 533 aa37■■■■□ 3.51
NME3-208ENST00000565379 PRAM1Q96QH2 718 aa37■■■■□ 3.51
NME3-208ENST00000565379 XPCQ01831 940 aaPredicted RBP36.99■■■■□ 3.51
NME3-208ENST00000565379 KIAA1210Q9ULL0 1709 aa36.99■■■■□ 3.51
NME3-208ENST00000565379 SIRT1Q96EB6 747 aa36.98■■■■□ 3.51
NME3-208ENST00000565379 PXDNQ92626 1479 aa36.95■■■■□ 3.51
NME3-208ENST00000565379 AFF2P51816 1311 aa36.95■■■■□ 3.51
NME3-208ENST00000565379 FOXO3O43524 673 aa36.94■■■■□ 3.5
NME3-208ENST00000565379 DLC1Q96QB1 1528 aa36.94■■■■□ 3.5
NME3-208ENST00000565379 TRAK1Q9UPV9 953 aa36.93■■■■□ 3.5
NME3-208ENST00000565379 NBPF8Q3BBV2 869 aa36.92■■■■□ 3.5
NME3-208ENST00000565379 NPHP3Q7Z494 1330 aa36.9■■■■□ 3.5
NME3-208ENST00000565379 RGPD8O14715 1765 aaPredicted RBP36.89■■■■□ 3.5
NME3-208ENST00000565379 ADAMTS2O95450 1211 aa36.89■■■■□ 3.5
NME3-208ENST00000565379 C8orf37Q96NL8 207 aa36.88■■■■□ 3.49
NME3-208ENST00000565379 POGKQ9P215 609 aa36.88■■■■□ 3.49
NME3-208ENST00000565379 UPF1Q92900 1129 aaKnown RBP eCLIP36.87■■■■□ 3.49
NME3-208ENST00000565379 TRPM1Q7Z4N2 1603 aa36.85■■■■□ 3.49
NME3-208ENST00000565379 CDK12Q9NYV4 1490 aaPredicted RBP36.85■■■■□ 3.49
NME3-208ENST00000565379 RALGAPBQ86X10 1494 aa36.84■■■■□ 3.49
NME3-208ENST00000565379 ROCK2O75116 1388 aaKnown RBP36.84■■■■□ 3.49
NME3-208ENST00000565379 HIRIP3Q9BW71 556 aaPredicted RBP36.84■■■■□ 3.49
NME3-208ENST00000565379 QTRT2Q9H974 415 aaKnown RBP36.83■■■■□ 3.49
NME3-208ENST00000565379 COL22A1Q8NFW1 1626 aaPredicted RBP36.83■■■■□ 3.49
NME3-208ENST00000565379 NBPF1Q3BBV0 1214 aa36.82■■■■□ 3.48
NME3-208ENST00000565379 GPRASP1Q5JY77 1395 aa36.81■■■■□ 3.48
NME3-208ENST00000565379 MINK1Q8N4C8 1332 aaPredicted RBP36.81■■■■□ 3.48
NME3-208ENST00000565379 USP32Q8NFA0 1604 aa36.81■■■■□ 3.48
NME3-208ENST00000565379 KIF1AQ12756 1690 aa36.8■■■■□ 3.48
NME3-208ENST00000565379 NGLY1Q96IV0 654 aa36.8■■■■□ 3.48
NME3-208ENST00000565379 ADGRB2O60241 1585 aa36.79■■■■□ 3.48
NME3-208ENST00000565379 ZEB1P37275 1124 aaPredicted RBP36.78■■■■□ 3.48
NME3-208ENST00000565379 RBM6P78332 1123 aaKnown RBP36.78■■■■□ 3.48
NME3-208ENST00000565379 PHF8Q9UPP1 1060 aa36.77■■■■□ 3.48
NME3-208ENST00000565379 ARHGEF28Q8N1W1 1705 aaKnown RBP36.75■■■■□ 3.47
NME3-208ENST00000565379 KRT28Q7Z3Y7 464 aa36.73■■■■□ 3.47
NME3-208ENST00000565379 PRR36Q9H6K5 1346 aa36.73■■■■□ 3.47
NME3-208ENST00000565379 CARD11Q9BXL7 1154 aa36.72■■■■□ 3.47
NME3-208ENST00000565379 SPATA31A3Q5VYP0 1347 aa36.71■■■■□ 3.47
NME3-208ENST00000565379 PMFBP1Q8TBY8 1022 aa36.71■■■■□ 3.47
NME3-208ENST00000565379 ANKARQ7Z5J8 1434 aa36.69■■■■□ 3.46
NME3-208ENST00000565379 EIF3AQ14152 1382 aaKnown RBP36.66■■■■□ 3.46
NME3-208ENST00000565379 USP21Q9UK80 565 aa36.65■■■■□ 3.46
NME3-208ENST00000565379 WASLO00401 505 aaPredicted RBP36.64■■■■□ 3.46
NME3-208ENST00000565379 PLEKHG5O94827 1062 aa36.64■■■■□ 3.46
NME3-208ENST00000565379 FNBP4Q8N3X1 1017 aaPredicted RBP36.64■■■■□ 3.46
NME3-208ENST00000565379 TULP4Q9NRJ4 1543 aa36.64■■■■□ 3.46
NME3-208ENST00000565379 TNS3Q68CZ2 1445 aa36.63■■■■□ 3.45
NME3-208ENST00000565379 RGS12O14924 1447 aa36.62■■■■□ 3.45
NME3-208ENST00000565379 TRPC5Q9UL62 973 aaPredicted RBP36.61■■■■□ 3.45
NME3-208ENST00000565379 MARF1Q9Y4F3 1742 aaKnown RBP36.59■■■■□ 3.45
NME3-208ENST00000565379 CABLES1Q8TDN4 633 aa36.59■■■■□ 3.45
NME3-208ENST00000565379 PSME1Q06323 249 aa36.57■■■■□ 3.44
NME3-208ENST00000565379 SBNO1A3KN83 1393 aa36.56■■■■□ 3.44
NME3-208ENST00000565379 LMOD2Q6P5Q4 547 aa36.55■■■■□ 3.44
NME3-208ENST00000565379 ATP7BP35670 1465 aa36.55■■■■□ 3.44
NME3-208ENST00000565379 BCL9LQ86UU0 1499 aa36.55■■■■□ 3.44
NME3-208ENST00000565379 TRPM3Q9HCF6 1732 aaPredicted RBP36.54■■■■□ 3.44
NME3-208ENST00000565379 CENPJQ9HC77 1338 aaPredicted RBP36.54■■■■□ 3.44
NME3-208ENST00000565379 ATRNO75882 1429 aa36.53■■■■□ 3.44
NME3-208ENST00000565379 ABCA3Q99758 1704 aa36.5■■■■□ 3.43
NME3-208ENST00000565379 NUDT16Q96DE0 195 aaKnown RBP36.49■■■■□ 3.43
NME3-208ENST00000565379 CDK19Q9BWU1 502 aa36.49■■■■□ 3.43
NME3-208ENST00000565379 USP47Q96K76 1375 aa36.49■■■■□ 3.43
NME3-208ENST00000565379 SLC24A1O60721 1099 aa36.48■■■■□ 3.43
NME3-208ENST00000565379 ARHGEF10O15013 1369 aa36.45■■■■□ 3.43
NME3-208ENST00000565379 ALS2Q96Q42 1657 aa36.45■■■■□ 3.42
NME3-208ENST00000565379 SLIT2O94813 1529 aa36.44■■■■□ 3.42
NME3-208ENST00000565379 ATAD2Q6PL18 1390 aa36.44■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms