RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 PRAM1Q96QH2 718 aa23.78■■□□□ 1.4
RNF40-206ENST00000564260 POGKQ9P215 609 aa23.78■■□□□ 1.4
RNF40-206ENST00000564260 TRAK1Q9UPV9 953 aa23.78■■□□□ 1.4
RNF40-206ENST00000564260 NALCNQ8IZF0 1738 aa23.77■■□□□ 1.4
RNF40-206ENST00000564260 WAPLQ7Z5K2 1190 aa23.76■■□□□ 1.39
RNF40-206ENST00000564260 SLAIN2Q9P270 581 aa23.76■■□□□ 1.39
RNF40-206ENST00000564260 ADGRB2O60241 1585 aa23.75■■□□□ 1.39
RNF40-206ENST00000564260 PLEKHH1Q9ULM0 1364 aa23.75■■□□□ 1.39
RNF40-206ENST00000564260 ARHGEF28Q8N1W1 1705 aaKnown RBP23.74■■□□□ 1.39
RNF40-206ENST00000564260 MST1RQ04912 1400 aa23.73■■□□□ 1.39
RNF40-206ENST00000564260 CENPJQ9HC77 1338 aaPredicted RBP23.7■■□□□ 1.38
RNF40-206ENST00000564260 CARD11Q9BXL7 1154 aa23.7■■□□□ 1.38
RNF40-206ENST00000564260 SLC24A1O60721 1099 aa23.69■■□□□ 1.38
RNF40-206ENST00000564260 SBNO2Q9Y2G9 1366 aa23.68■■□□□ 1.38
RNF40-206ENST00000564260 C1orf167Q5SNV9 1468 aa23.68■■□□□ 1.38
RNF40-206ENST00000564260 PIP4K2BP78356 416 aa23.67■■□□□ 1.38
RNF40-206ENST00000564260 ILDR1Q86SU0 546 aaPredicted RBP23.67■■□□□ 1.38
RNF40-206ENST00000564260 ANKARQ7Z5J8 1434 aa23.67■■□□□ 1.38
RNF40-206ENST00000564260 SCAF1Q9H7N4 1312 aaKnown RBP23.64■■□□□ 1.38
RNF40-206ENST00000564260 WASLO00401 505 aaPredicted RBP23.63■■□□□ 1.37
RNF40-206ENST00000564260 ROBO1Q9Y6N7 1651 aa23.63■■□□□ 1.37
RNF40-206ENST00000564260 FMN2Q9NZ56 1722 aa23.62■■□□□ 1.37
RNF40-206ENST00000564260 SAFB2Q14151 953 aaKnown RBP eCLIP23.62■■□□□ 1.37
RNF40-206ENST00000564260 BRINP3Q76B58 766 aa23.61■■□□□ 1.37
RNF40-206ENST00000564260 TULP4Q9NRJ4 1543 aa23.6■■□□□ 1.37
RNF40-206ENST00000564260 MINK1Q8N4C8 1332 aaPredicted RBP23.59■■□□□ 1.37
RNF40-206ENST00000564260 AHDC1Q5TGY3 1603 aaPredicted RBP23.59■■□□□ 1.37
RNF40-206ENST00000564260 QRICH2Q9H0J4 1663 aa23.57■■□□□ 1.36
RNF40-206ENST00000564260 EVC2Q86UK5 1308 aa23.57■■□□□ 1.36
RNF40-206ENST00000564260 HIRIP3Q9BW71 556 aaPredicted RBP23.55■■□□□ 1.36
RNF40-206ENST00000564260 KIF1AQ12756 1690 aa23.54■■□□□ 1.36
RNF40-206ENST00000564260 USP47Q96K76 1375 aa23.54■■□□□ 1.36
RNF40-206ENST00000564260 PUS7Q96PZ0 661 aaKnown RBP23.54■■□□□ 1.36
RNF40-206ENST00000564260 NPHP3Q7Z494 1330 aa23.54■■□□□ 1.36
RNF40-206ENST00000564260 ESCO1Q5FWF5 840 aa23.53■■□□□ 1.36
RNF40-206ENST00000564260 CDK19Q9BWU1 502 aa23.53■■□□□ 1.36
RNF40-206ENST00000564260 NHSL1Q5SYE7 1610 aa23.52■■□□□ 1.36
RNF40-206ENST00000564260 ATP7BP35670 1465 aa23.52■■□□□ 1.36
RNF40-206ENST00000564260 HSPA1LP34931 641 aa23.52■■□□□ 1.36
RNF40-206ENST00000564260 ORAI2Q96SN7 254 aa23.51■■□□□ 1.35
RNF40-206ENST00000564260 CCDC61Q9Y6R9 512 aa23.5■■□□□ 1.35
RNF40-206ENST00000564260 PHF8Q9UPP1 1060 aa23.49■■□□□ 1.35
RNF40-206ENST00000564260 USP32Q8NFA0 1604 aa23.48■■□□□ 1.35
RNF40-206ENST00000564260 ST20-MTHFSA0A0A6YYL1 179 aa23.48■■□□□ 1.35
RNF40-206ENST00000564260 NUDT16Q96DE0 195 aaKnown RBP23.48■■□□□ 1.35
RNF40-206ENST00000564260 SOS2Q07890 1332 aaPredicted RBP23.48■■□□□ 1.35
RNF40-206ENST00000564260 ATAD2Q6PL18 1390 aa23.48■■□□□ 1.35
RNF40-206ENST00000564260 ITSN1Q15811 1721 aa23.47■■□□□ 1.35
RNF40-206ENST00000564260 SRPK2P78362 688 aaKnown RBP23.47■■□□□ 1.35
RNF40-206ENST00000564260 COL16A1Q07092 1604 aaPredicted RBP23.47■■□□□ 1.35
RNF40-206ENST00000564260 PHLPP1O60346 1717 aa23.46■■□□□ 1.35
RNF40-206ENST00000564260 LRRC59Q96AG4 307 aaKnown RBP23.46■■□□□ 1.35
RNF40-206ENST00000564260 TESK2Q96S53 571 aa23.46■■□□□ 1.35
RNF40-206ENST00000564260 PRR36Q9H6K5 1346 aa23.46■■□□□ 1.35
RNF40-206ENST00000564260 PLEKHG3A1L390 1219 aa23.45■■□□□ 1.34
RNF40-206ENST00000564260 NUTM2FA1L443 756 aa23.45■■□□□ 1.34
RNF40-206ENST00000564260 EIF4G2P78344 907 aaKnown RBP eCLIP23.45■■□□□ 1.34
RNF40-206ENST00000564260 JCADQ9P266 1359 aa23.44■■□□□ 1.34
RNF40-206ENST00000564260 CDCA8Q53HL2 280 aa23.44■■□□□ 1.34
RNF40-206ENST00000564260 TOPAZ1Q8N9V7 1692 aa23.43■■□□□ 1.34
RNF40-206ENST00000564260 PXDNQ92626 1479 aa23.43■■□□□ 1.34
RNF40-206ENST00000564260 POLR3AO14802 1390 aaPredicted RBP23.42■■□□□ 1.34
RNF40-206ENST00000564260 BRD4O60885 1362 aaPredicted RBP23.42■■□□□ 1.34
RNF40-206ENST00000564260 TMF1P82094 1093 aa23.42■■□□□ 1.34
RNF40-206ENST00000564260 PSME1Q06323 249 aa23.42■■□□□ 1.34
RNF40-206ENST00000564260 NINLQ9Y2I6 1382 aa23.41■■□□□ 1.34
RNF40-206ENST00000564260 FOXO3O43524 673 aa23.41■■□□□ 1.34
RNF40-206ENST00000564260 SBNO1A3KN83 1393 aa23.4■■□□□ 1.34
RNF40-206ENST00000564260 CABP2Q9NPB3 220 aa23.39■■□□□ 1.33
RNF40-206ENST00000564260 PPIP5K1Q6PFW1 1433 aa23.39■■□□□ 1.33
RNF40-206ENST00000564260 SPATA31A6Q5VVP1 1343 aa23.37■■□□□ 1.33
RNF40-206ENST00000564260 ZEB1P37275 1124 aaPredicted RBP23.37■■□□□ 1.33
RNF40-206ENST00000564260 NGDNQ8NEJ9 315 aaKnown RBP23.37■■□□□ 1.33
RNF40-206ENST00000564260 SHPRHQ149N8 1683 aa23.36■■□□□ 1.33
RNF40-206ENST00000564260 RGPD8O14715 1765 aaPredicted RBP23.36■■□□□ 1.33
RNF40-206ENST00000564260 KRT28Q7Z3Y7 464 aa23.35■■□□□ 1.33
RNF40-206ENST00000564260 PMFBP1Q8TBY8 1022 aa23.35■■□□□ 1.33
RNF40-206ENST00000564260 ZNF692Q9BU19 519 aaPredicted RBP23.34■■□□□ 1.33
RNF40-206ENST00000564260 ARHGEF10O15013 1369 aa23.34■■□□□ 1.33
RNF40-206ENST00000564260 ACEP12821 1306 aa23.33■■□□□ 1.33
RNF40-206ENST00000564260 TNS3Q68CZ2 1445 aa23.33■■□□□ 1.32
RNF40-206ENST00000564260 SPATA31A3Q5VYP0 1347 aa23.33■■□□□ 1.32
RNF40-206ENST00000564260 PNPLA6Q8IY17 1366 aa23.32■■□□□ 1.32
RNF40-206ENST00000564260 DDX17Q92841 729 aaKnown RBP23.32■■□□□ 1.32
RNF40-206ENST00000564260 CABP1Q9NZU7 370 aa23.32■■□□□ 1.32
RNF40-206ENST00000564260 HSPA5P11021 654 aaKnown RBP23.31■■□□□ 1.32
RNF40-206ENST00000564260 COL22A1Q8NFW1 1626 aaPredicted RBP23.3■■□□□ 1.32
RNF40-206ENST00000564260 DISP3Q9P2K9 1392 aa23.29■■□□□ 1.32
RNF40-206ENST00000564260 CPSF1Q10570 1443 aaKnown RBP23.28■■□□□ 1.32
RNF40-206ENST00000564260 TERF2IPQ9NYB0 399 aa23.27■■□□□ 1.32
RNF40-206ENST00000564260 USP6P35125 1406 aa23.26■■□□□ 1.31
RNF40-206ENST00000564260 TRPM3Q9HCF6 1732 aaPredicted RBP23.26■■□□□ 1.31
RNF40-206ENST00000564260 XPCQ01831 940 aaPredicted RBP23.24■■□□□ 1.31
RNF40-206ENST00000564260 HDGFL2Q7Z4V5 671 aaPredicted RBP23.24■■□□□ 1.31
RNF40-206ENST00000564260 SSH2Q76I76 1423 aa23.24■■□□□ 1.31
RNF40-206ENST00000564260 TTC21AQ8NDW8 1320 aa23.23■■□□□ 1.31
RNF40-206ENST00000564260 MED1Q15648 1581 aaPredicted RBP23.22■■□□□ 1.31
RNF40-206ENST00000564260 ALS2Q96Q42 1657 aa23.22■■□□□ 1.31
RNF40-206ENST00000564260 TMC1Q8TDI8 760 aa23.21■■□□□ 1.31
RNF40-206ENST00000564260 ANKRD36BQ8N2N9 1353 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms