RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LRPPRCP42704 1394 aaKnown RBP12.43□□□□□ -0.42
VPS39-207ENST00000563692 RALGAPBQ86X10 1494 aa12.42□□□□□ -0.42
VPS39-207ENST00000563692 PIK3C2GO75747 1445 aa12.42□□□□□ -0.42
VPS39-207ENST00000563692 ASXL1Q8IXJ9 1541 aa12.42□□□□□ -0.42
VPS39-207ENST00000563692 AHDC1Q5TGY3 1603 aaPredicted RBP12.41□□□□□ -0.42
VPS39-207ENST00000563692 TMEM132EQ6IEE7 984 aa12.41□□□□□ -0.42
VPS39-207ENST00000563692 LRRC59Q96AG4 307 aaKnown RBP12.41□□□□□ -0.42
VPS39-207ENST00000563692 ROCK2O75116 1388 aaKnown RBP12.41□□□□□ -0.42
VPS39-207ENST00000563692 C14orf93Q9H972 538 aaKnown RBP12.4□□□□□ -0.42
VPS39-207ENST00000563692 ABCC11Q96J66 1382 aa12.4□□□□□ -0.42
VPS39-207ENST00000563692 USP47Q96K76 1375 aa12.4□□□□□ -0.42
VPS39-207ENST00000563692 COL16A1Q07092 1604 aaPredicted RBP12.4□□□□□ -0.42
VPS39-207ENST00000563692 MYOM2P54296 1465 aa12.4□□□□□ -0.43
VPS39-207ENST00000563692 C1orf167Q5SNV9 1468 aa12.4□□□□□ -0.43
VPS39-207ENST00000563692 SETD1AO15047 1707 aaKnown RBP12.4□□□□□ -0.43
VPS39-207ENST00000563692 TECPR2O15040 1411 aa12.38□□□□□ -0.43
VPS39-207ENST00000563692 YTHDC2Q9H6S0 1430 aaKnown RBP12.38□□□□□ -0.43
VPS39-207ENST00000563692 NALCNQ8IZF0 1738 aa12.38□□□□□ -0.43
VPS39-207ENST00000563692 NUTM2BA6NNL0 878 aaPredicted RBP12.38□□□□□ -0.43
VPS39-207ENST00000563692 NUTM2EB1AL46 878 aaPredicted RBP12.38□□□□□ -0.43
VPS39-207ENST00000563692 ANP32CO43423 234 aa12.38□□□□□ -0.43
VPS39-207ENST00000563692 CFAP70Q5T0N1 1121 aa12.38□□□□□ -0.43
VPS39-207ENST00000563692 WAPLQ7Z5K2 1190 aa12.38□□□□□ -0.43
VPS39-207ENST00000563692 NUTM2AQ8IVF1 878 aaPredicted RBP12.38□□□□□ -0.43
VPS39-207ENST00000563692 ESCO1Q5FWF5 840 aa12.37□□□□□ -0.43
VPS39-207ENST00000563692 RGS17Q9UGC6 210 aaPredicted RBP12.37□□□□□ -0.43
VPS39-207ENST00000563692 WASHC2AQ641Q2 1341 aa12.37□□□□□ -0.43
VPS39-207ENST00000563692 DDX17Q92841 729 aaKnown RBP12.36□□□□□ -0.43
VPS39-207ENST00000563692 SIRT1Q96EB6 747 aa12.36□□□□□ -0.43
VPS39-207ENST00000563692 ORAI2Q96SN7 254 aa12.36□□□□□ -0.43
VPS39-207ENST00000563692 POGKQ9P215 609 aa12.36□□□□□ -0.43
VPS39-207ENST00000563692 IFT172Q9UG01 1749 aa12.36□□□□□ -0.43
VPS39-207ENST00000563692 NRXN1Q9ULB1 1477 aa12.35□□□□□ -0.43
VPS39-207ENST00000563692 CCDC7Q96M83 1385 aa12.35□□□□□ -0.43
VPS39-207ENST00000563692 ZNF772Q68DY9 489 aaPredicted RBP12.35□□□□□ -0.43
VPS39-207ENST00000563692 NPHP3Q7Z494 1330 aa12.35□□□□□ -0.43
VPS39-207ENST00000563692 GPRASP1Q5JY77 1395 aa12.34□□□□□ -0.43
VPS39-207ENST00000563692 ST20-MTHFSA0A0A6YYL1 179 aa12.34□□□□□ -0.43
VPS39-207ENST00000563692 SLC24A1O60721 1099 aa12.34□□□□□ -0.43
VPS39-207ENST00000563692 NBPF1Q3BBV0 1214 aa12.34□□□□□ -0.43
VPS39-207ENST00000563692 CDC42BPGQ6DT37 1551 aa12.34□□□□□ -0.43
VPS39-207ENST00000563692 LAMC1P11047 1609 aa12.33□□□□□ -0.43
VPS39-207ENST00000563692 PLEKHH1Q9ULM0 1364 aa12.33□□□□□ -0.44
VPS39-207ENST00000563692 NUTM2FA1L443 756 aa12.33□□□□□ -0.44
VPS39-207ENST00000563692 SAFB2Q14151 953 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS39-207ENST00000563692 POTEAQ6S8J7 498 aa12.33□□□□□ -0.44
VPS39-207ENST00000563692 PRAM1Q96QH2 718 aa12.33□□□□□ -0.44
VPS39-207ENST00000563692 SOS2Q07890 1332 aaPredicted RBP12.33□□□□□ -0.44
VPS39-207ENST00000563692 SHPRHQ149N8 1683 aa12.32□□□□□ -0.44
VPS39-207ENST00000563692 C11orf95C9JLR9 678 aaPredicted RBP12.32□□□□□ -0.44
VPS39-207ENST00000563692 FOXO3O43524 673 aa12.32□□□□□ -0.44
VPS39-207ENST00000563692 LRP6O75581 1613 aa12.32□□□□□ -0.44
VPS39-207ENST00000563692 NHSL1Q5SYE7 1610 aa12.32□□□□□ -0.44
VPS39-207ENST00000563692 TRPM1Q7Z4N2 1603 aa12.32□□□□□ -0.44
VPS39-207ENST00000563692 KIF7Q2M1P5 1343 aa12.32□□□□□ -0.44
VPS39-207ENST00000563692 PNPLA6Q8IY17 1366 aa12.31□□□□□ -0.44
VPS39-207ENST00000563692 TRAK1Q9UPV9 953 aa12.31□□□□□ -0.44
VPS39-207ENST00000563692 KNDC1Q76NI1 1749 aa12.31□□□□□ -0.44
VPS39-207ENST00000563692 CENPBP07199 599 aaPredicted RBP12.3□□□□□ -0.44
VPS39-207ENST00000563692 C8orf37Q96NL8 207 aa12.3□□□□□ -0.44
VPS39-207ENST00000563692 CCER2I3L3R5 266 aa12.29□□□□□ -0.44
VPS39-207ENST00000563692 ADAMTS2O95450 1211 aa12.29□□□□□ -0.44
VPS39-207ENST00000563692 POLR3GLQ9BT43 218 aa12.29□□□□□ -0.44
VPS39-207ENST00000563692 DLC1Q96QB1 1528 aa12.28□□□□□ -0.44
VPS39-207ENST00000563692 TMF1P82094 1093 aa12.28□□□□□ -0.44
VPS39-207ENST00000563692 XPCQ01831 940 aaPredicted RBP12.28□□□□□ -0.44
VPS39-207ENST00000563692 NGLY1Q96IV0 654 aa12.28□□□□□ -0.44
VPS39-207ENST00000563692 AFF2P51816 1311 aa12.28□□□□□ -0.44
VPS39-207ENST00000563692 EIF3AQ14152 1382 aaKnown RBP12.28□□□□□ -0.44
VPS39-207ENST00000563692 RXRBP28702 533 aa12.27□□□□□ -0.45
VPS39-207ENST00000563692 PSME1Q06323 249 aa12.27□□□□□ -0.45
VPS39-207ENST00000563692 CDCA8Q53HL2 280 aa12.27□□□□□ -0.45
VPS39-207ENST00000563692 PHF8Q9UPP1 1060 aa12.27□□□□□ -0.45
VPS39-207ENST00000563692 MINK1Q8N4C8 1332 aaPredicted RBP12.26□□□□□ -0.45
VPS39-207ENST00000563692 ADGRB1O14514 1584 aa12.26□□□□□ -0.45
VPS39-207ENST00000563692 KRT28Q7Z3Y7 464 aa12.25□□□□□ -0.45
VPS39-207ENST00000563692 KIAA1210Q9ULL0 1709 aa12.25□□□□□ -0.45
VPS39-207ENST00000563692 HAP1P54257 671 aaPredicted RBP12.24□□□□□ -0.45
VPS39-207ENST00000563692 ANKARQ7Z5J8 1434 aa12.24□□□□□ -0.45
VPS39-207ENST00000563692 PXDNQ92626 1479 aa12.24□□□□□ -0.45
VPS39-207ENST00000563692 FMN2Q9NZ56 1722 aa12.23□□□□□ -0.45
VPS39-207ENST00000563692 LMOD2Q6P5Q4 547 aa12.23□□□□□ -0.45
VPS39-207ENST00000563692 YTHDC1Q96MU7 727 aaKnown RBP12.23□□□□□ -0.45
VPS39-207ENST00000563692 TESK2Q96S53 571 aa12.23□□□□□ -0.45
VPS39-207ENST00000563692 QTRT2Q9H974 415 aaKnown RBP12.23□□□□□ -0.45
VPS39-207ENST00000563692 KIF1AQ12756 1690 aa12.22□□□□□ -0.45
VPS39-207ENST00000563692 SPATA31A3Q5VYP0 1347 aa12.22□□□□□ -0.45
VPS39-207ENST00000563692 WASLO00401 505 aaPredicted RBP12.22□□□□□ -0.45
VPS39-207ENST00000563692 USP21Q9UK80 565 aa12.22□□□□□ -0.45
VPS39-207ENST00000563692 RBM6P78332 1123 aaKnown RBP12.21□□□□□ -0.45
VPS39-207ENST00000563692 PMFBP1Q8TBY8 1022 aa12.21□□□□□ -0.45
VPS39-207ENST00000563692 TRPC5Q9UL62 973 aaPredicted RBP12.21□□□□□ -0.45
VPS39-207ENST00000563692 SBNO1A3KN83 1393 aa12.2□□□□□ -0.46
VPS39-207ENST00000563692 ARHGEF10O15013 1369 aa12.2□□□□□ -0.46
VPS39-207ENST00000563692 NGDNQ8NEJ9 315 aaKnown RBP12.2□□□□□ -0.46
VPS39-207ENST00000563692 ADGRB2O60241 1585 aa12.2□□□□□ -0.46
VPS39-207ENST00000563692 TNS3Q68CZ2 1445 aa12.2□□□□□ -0.46
VPS39-207ENST00000563692 FNBP4Q8N3X1 1017 aaPredicted RBP12.19□□□□□ -0.46
VPS39-207ENST00000563692 PRKRIP1Q9H875 184 aaPredicted RBP12.19□□□□□ -0.46
VPS39-207ENST00000563692 CDK12Q9NYV4 1490 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms