RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 IFT172Q9UG01 1749 aa23.39■■□□□ 1.33
CLK3-211ENST00000563297 LRPPRCP42704 1394 aaKnown RBP23.38■■□□□ 1.33
CLK3-211ENST00000563297 C8orf37Q96NL8 207 aa23.37■■□□□ 1.33
CLK3-211ENST00000563297 ABCC11Q96J66 1382 aa23.37■■□□□ 1.33
CLK3-211ENST00000563297 ESCO1Q5FWF5 840 aa23.36■■□□□ 1.33
CLK3-211ENST00000563297 TECPR2O15040 1411 aa23.35■■□□□ 1.33
CLK3-211ENST00000563297 PIK3C2GO75747 1445 aa23.34■■□□□ 1.33
CLK3-211ENST00000563297 ADAMTS2O95450 1211 aa23.33■■□□□ 1.33
CLK3-211ENST00000563297 C14orf93Q9H972 538 aaKnown RBP23.33■■□□□ 1.33
CLK3-211ENST00000563297 QTRT2Q9H974 415 aaKnown RBP23.33■■□□□ 1.33
CLK3-211ENST00000563297 CDC42BPGQ6DT37 1551 aa23.32■■□□□ 1.32
CLK3-211ENST00000563297 PLEKHH1Q9ULM0 1364 aa23.32■■□□□ 1.32
CLK3-211ENST00000563297 NGLY1Q96IV0 654 aa23.32■■□□□ 1.32
CLK3-211ENST00000563297 NUTM2FA1L443 756 aa23.31■■□□□ 1.32
CLK3-211ENST00000563297 UPF1Q92900 1129 aaKnown RBP eCLIP23.31■■□□□ 1.32
CLK3-211ENST00000563297 NPHP3Q7Z494 1330 aa23.31■■□□□ 1.32
CLK3-211ENST00000563297 RAB3GAP2Q9H2M9 1393 aa23.3■■□□□ 1.32
CLK3-211ENST00000563297 FOXO3O43524 673 aa23.3■■□□□ 1.32
CLK3-211ENST00000563297 SIRT1Q96EB6 747 aa23.3■■□□□ 1.32
CLK3-211ENST00000563297 YTHDC2Q9H6S0 1430 aaKnown RBP23.3■■□□□ 1.32
CLK3-211ENST00000563297 CDK12Q9NYV4 1490 aaPredicted RBP23.3■■□□□ 1.32
CLK3-211ENST00000563297 RBM6P78332 1123 aaKnown RBP23.29■■□□□ 1.32
CLK3-211ENST00000563297 CFAP70Q5T0N1 1121 aa23.29■■□□□ 1.32
CLK3-211ENST00000563297 KNDC1Q76NI1 1749 aa23.28■■□□□ 1.32
CLK3-211ENST00000563297 XPCQ01831 940 aaPredicted RBP23.26■■□□□ 1.31
CLK3-211ENST00000563297 NRXN1Q9ULB1 1477 aa23.25■■□□□ 1.31
CLK3-211ENST00000563297 DHX57Q6P158 1386 aaKnown RBP23.25■■□□□ 1.31
CLK3-211ENST00000563297 PXDNQ92626 1479 aa23.24■■□□□ 1.31
CLK3-211ENST00000563297 FNBP4Q8N3X1 1017 aaPredicted RBP23.24■■□□□ 1.31
CLK3-211ENST00000563297 USP21Q9UK80 565 aa23.24■■□□□ 1.31
CLK3-211ENST00000563297 COL22A1Q8NFW1 1626 aaPredicted RBP23.22■■□□□ 1.31
CLK3-211ENST00000563297 MYOM2P54296 1465 aa23.22■■□□□ 1.31
CLK3-211ENST00000563297 FMN2Q9NZ56 1722 aa23.2■■□□□ 1.3
CLK3-211ENST00000563297 RGS12O14924 1447 aa23.19■■□□□ 1.3
CLK3-211ENST00000563297 TRPC5Q9UL62 973 aaPredicted RBP23.19■■□□□ 1.3
CLK3-211ENST00000563297 PRAM1Q96QH2 718 aa23.18■■□□□ 1.3
CLK3-211ENST00000563297 HRCP23327 699 aa23.17■■□□□ 1.3
CLK3-211ENST00000563297 SAFB2Q14151 953 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLK3-211ENST00000563297 KRT28Q7Z3Y7 464 aa23.17■■□□□ 1.3
CLK3-211ENST00000563297 SPATA31A3Q5VYP0 1347 aa23.16■■□□□ 1.3
CLK3-211ENST00000563297 RGPD8O14715 1765 aaPredicted RBP23.16■■□□□ 1.3
CLK3-211ENST00000563297 PHF8Q9UPP1 1060 aa23.15■■□□□ 1.3
CLK3-211ENST00000563297 KDM2AQ9Y2K7 1162 aa23.15■■□□□ 1.3
CLK3-211ENST00000563297 POGKQ9P215 609 aa23.14■■□□□ 1.29
CLK3-211ENST00000563297 DCAF11Q8TEB1 546 aa23.13■■□□□ 1.29
CLK3-211ENST00000563297 ATRNO75882 1429 aa23.13■■□□□ 1.29
CLK3-211ENST00000563297 BCL9LQ86UU0 1499 aa23.12■■□□□ 1.29
CLK3-211ENST00000563297 KIF1AQ12756 1690 aa23.12■■□□□ 1.29
CLK3-211ENST00000563297 MARF1Q9Y4F3 1742 aaKnown RBP23.11■■□□□ 1.29
CLK3-211ENST00000563297 TRAK1Q9UPV9 953 aa23.11■■□□□ 1.29
CLK3-211ENST00000563297 DLC1Q96QB1 1528 aa23.1■■□□□ 1.29
CLK3-211ENST00000563297 PSME1Q06323 249 aa23.1■■□□□ 1.29
CLK3-211ENST00000563297 STAC3Q96MF2 364 aa23.1■■□□□ 1.29
CLK3-211ENST00000563297 ADGRB1O14514 1584 aa23.09■■□□□ 1.29
CLK3-211ENST00000563297 GJD4Q96KN9 370 aaPredicted RBP23.07■■□□□ 1.28
CLK3-211ENST00000563297 PMFBP1Q8TBY8 1022 aa23.06■■□□□ 1.28
CLK3-211ENST00000563297 UNC5CLQ8IV45 518 aa23.05■■□□□ 1.28
CLK3-211ENST00000563297 CABLES1Q8TDN4 633 aa23.05■■□□□ 1.28
CLK3-211ENST00000563297 HIRIP3Q9BW71 556 aaPredicted RBP23.05■■□□□ 1.28
CLK3-211ENST00000563297 SBNO1A3KN83 1393 aa23.04■■□□□ 1.28
CLK3-211ENST00000563297 TNS3Q68CZ2 1445 aa23.04■■□□□ 1.28
CLK3-211ENST00000563297 ANKARQ7Z5J8 1434 aa23.04■■□□□ 1.28
CLK3-211ENST00000563297 MINK1Q8N4C8 1332 aaPredicted RBP23.04■■□□□ 1.28
CLK3-211ENST00000563297 ATAD2Q6PL18 1390 aa23.03■■□□□ 1.28
CLK3-211ENST00000563297 SLIT2O94813 1529 aa23.03■■□□□ 1.28
CLK3-211ENST00000563297 USP32Q8NFA0 1604 aa23.02■■□□□ 1.28
CLK3-211ENST00000563297 LMOD2Q6P5Q4 547 aa23.02■■□□□ 1.28
CLK3-211ENST00000563297 PLEKHG5O94827 1062 aa23.01■■□□□ 1.27
CLK3-211ENST00000563297 HAP1P54257 671 aaPredicted RBP23.01■■□□□ 1.27
CLK3-211ENST00000563297 ADGRB2O60241 1585 aa23.01■■□□□ 1.27
CLK3-211ENST00000563297 WASLO00401 505 aaPredicted RBP23■■□□□ 1.27
CLK3-211ENST00000563297 PRR36Q9H6K5 1346 aa23■■□□□ 1.27
CLK3-211ENST00000563297 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.99■■□□□ 1.27
CLK3-211ENST00000563297 ARHGEF10O15013 1369 aa22.98■■□□□ 1.27
CLK3-211ENST00000563297 FAM83GA6ND36 823 aa22.95■■□□□ 1.26
CLK3-211ENST00000563297 EIF3AQ14152 1382 aaKnown RBP22.95■■□□□ 1.26
CLK3-211ENST00000563297 RALGAPBQ86X10 1494 aa22.95■■□□□ 1.26
CLK3-211ENST00000563297 GPRASP1Q5JY77 1395 aa22.94■■□□□ 1.26
CLK3-211ENST00000563297 GLI3P10071 1580 aa22.93■■□□□ 1.26
CLK3-211ENST00000563297 TULP4Q9NRJ4 1543 aa22.93■■□□□ 1.26
CLK3-211ENST00000563297 VPS72Q15906 364 aa22.93■■□□□ 1.26
CLK3-211ENST00000563297 EP400Q96L91 3159 aa22.92■■□□□ 1.26
CLK3-211ENST00000563297 TRPM3Q9HCF6 1732 aaPredicted RBP22.91■■□□□ 1.26
CLK3-211ENST00000563297 CCDC125Q86Z20 511 aa22.91■■□□□ 1.26
CLK3-211ENST00000563297 NGDNQ8NEJ9 315 aaKnown RBP22.91■■□□□ 1.26
CLK3-211ENST00000563297 NUDT16Q96DE0 195 aaKnown RBP22.9■■□□□ 1.26
CLK3-211ENST00000563297 ABCA3Q99758 1704 aa22.9■■□□□ 1.26
CLK3-211ENST00000563297 ARHGEF28Q8N1W1 1705 aaKnown RBP22.89■■□□□ 1.26
CLK3-211ENST00000563297 ONECUT3O60422 494 aaPredicted RBP22.89■■□□□ 1.25
CLK3-211ENST00000563297 NWD2Q9ULI1 1742 aa22.88■■□□□ 1.25
CLK3-211ENST00000563297 SEPT12Q8IYM1 358 aa22.88■■□□□ 1.25
CLK3-211ENST00000563297 CDK19Q9BWU1 502 aa22.88■■□□□ 1.25
CLK3-211ENST00000563297 CCDC9Q9Y3X0 531 aaKnown RBP22.88■■□□□ 1.25
CLK3-211ENST00000563297 PLCH1Q4KWH8 1693 aa22.87■■□□□ 1.25
CLK3-211ENST00000563297 ALS2Q96Q42 1657 aa22.87■■□□□ 1.25
CLK3-211ENST00000563297 PAK3O75914 559 aaPredicted RBP22.87■■□□□ 1.25
CLK3-211ENST00000563297 NBPF1Q3BBV0 1214 aa22.87■■□□□ 1.25
CLK3-211ENST00000563297 BRWD3Q6RI45 1802 aa22.86■■□□□ 1.25
CLK3-211ENST00000563297 BTG4Q9NY30 223 aa22.85■■□□□ 1.25
CLK3-211ENST00000563297 ATP7BP35670 1465 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms