RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 TNRQ92752 1358 aa25.52■■□□□ 1.68
SMPD3-203ENST00000563226 RNF123Q5XPI4 1314 aa25.51■■□□□ 1.67
SMPD3-203ENST00000563226 ANKRD36BQ8N2N9 1353 aa25.51■■□□□ 1.67
SMPD3-203ENST00000563226 POGKQ9P215 609 aa25.51■■□□□ 1.67
SMPD3-203ENST00000563226 ERICH6BQ5W0A0 696 aa25.5■■□□□ 1.67
SMPD3-203ENST00000563226 CDCA7LQ96GN5 454 aa25.49■■□□□ 1.67
SMPD3-203ENST00000563226 UBR1Q8IWV7 1749 aa25.49■■□□□ 1.67
SMPD3-203ENST00000563226 SRPK2P78362 688 aaKnown RBP25.48■■□□□ 1.67
SMPD3-203ENST00000563226 PDE3BQ13370 1112 aa25.48■■□□□ 1.67
SMPD3-203ENST00000563226 DLC1Q96QB1 1528 aa25.47■■□□□ 1.67
SMPD3-203ENST00000563226 MORC1Q86VD1 984 aa25.46■■□□□ 1.67
SMPD3-203ENST00000563226 A0A1W2PP64 1363 aa25.45■■□□□ 1.66
SMPD3-203ENST00000563226 TNNT2P45379 298 aaPredicted RBP25.44■■□□□ 1.66
SMPD3-203ENST00000563226 PPP4R2Q9NY27 417 aa25.44■■□□□ 1.66
SMPD3-203ENST00000563226 CGNL1Q0VF96 1302 aa25.44■■□□□ 1.66
SMPD3-203ENST00000563226 PLEKHH1Q9ULM0 1364 aa25.44■■□□□ 1.66
SMPD3-203ENST00000563226 WAPLQ7Z5K2 1190 aa25.43■■□□□ 1.66
SMPD3-203ENST00000563226 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.43■■□□□ 1.66
SMPD3-203ENST00000563226 TSHZ2Q9NRE2 1034 aa25.43■■□□□ 1.66
SMPD3-203ENST00000563226 METP08581 1390 aa25.42■■□□□ 1.66
SMPD3-203ENST00000563226 SHPRHQ149N8 1683 aa25.42■■□□□ 1.66
SMPD3-203ENST00000563226 POLR3AO14802 1390 aaPredicted RBP25.42■■□□□ 1.66
SMPD3-203ENST00000563226 ATAD2Q6PL18 1390 aa25.42■■□□□ 1.66
SMPD3-203ENST00000563226 NINLQ9Y2I6 1382 aa25.42■■□□□ 1.66
SMPD3-203ENST00000563226 CD163L1Q9NR16 1453 aa25.41■■□□□ 1.66
SMPD3-203ENST00000563226 CEBPAP49715 358 aaPredicted RBP25.41■■□□□ 1.66
SMPD3-203ENST00000563226 CCDC146Q8IYE0 955 aa25.41■■□□□ 1.66
SMPD3-203ENST00000563226 CDK19Q9BWU1 502 aa25.4■■□□□ 1.66
SMPD3-203ENST00000563226 ABCC11Q96J66 1382 aa25.39■■□□□ 1.66
SMPD3-203ENST00000563226 C3P01024 1663 aa25.39■■□□□ 1.66
SMPD3-203ENST00000563226 TRHP20396 242 aaPredicted RBP25.39■■□□□ 1.65
SMPD3-203ENST00000563226 TMEM2Q9UHN6 1383 aa25.39■■□□□ 1.65
SMPD3-203ENST00000563226 NSD2O96028 1365 aa25.37■■□□□ 1.65
SMPD3-203ENST00000563226 RCAN3Q9UKA8 241 aa25.37■■□□□ 1.65
SMPD3-203ENST00000563226 FER1L4A9Z1Z3 1794 aa25.37■■□□□ 1.65
SMPD3-203ENST00000563226 KNDC1Q76NI1 1749 aa25.36■■□□□ 1.65
SMPD3-203ENST00000563226 ZNF521Q96K83 1311 aa25.35■■□□□ 1.65
SMPD3-203ENST00000563226 B4GALNT3Q6L9W6 998 aa25.35■■□□□ 1.65
SMPD3-203ENST00000563226 RRP1P56182 461 aaKnown RBP25.33■■□□□ 1.65
SMPD3-203ENST00000563226 NLRP1Q9C000 1473 aa25.32■■□□□ 1.64
SMPD3-203ENST00000563226 ANKRD26Q9UPS8 1709 aa25.32■■□□□ 1.64
SMPD3-203ENST00000563226 MTHFSP49914 203 aa25.32■■□□□ 1.64
SMPD3-203ENST00000563226 APAF1O14727 1248 aa25.32■■□□□ 1.64
SMPD3-203ENST00000563226 HDGFP51858 240 aaKnown RBP25.32■■□□□ 1.64
SMPD3-203ENST00000563226 TXNDC2Q86VQ3 553 aa25.31■■□□□ 1.64
SMPD3-203ENST00000563226 TERF2IPQ9NYB0 399 aa25.31■■□□□ 1.64
SMPD3-203ENST00000563226 CABP1Q9NZU7 370 aa25.31■■□□□ 1.64
SMPD3-203ENST00000563226 PLPPR3Q6T4P5 718 aa25.3■■□□□ 1.64
SMPD3-203ENST00000563226 GGNBP2Q9H3C7 697 aa25.3■■□□□ 1.64
SMPD3-203ENST00000563226 ADAMTS13Q76LX8 1427 aa25.3■■□□□ 1.64
SMPD3-203ENST00000563226 LTKP29376 864 aa25.29■■□□□ 1.64
SMPD3-203ENST00000563226 CPS1P31327 1500 aa25.29■■□□□ 1.64
SMPD3-203ENST00000563226 TECPR2O15040 1411 aa25.29■■□□□ 1.64
SMPD3-203ENST00000563226 KIF20BQ96Q89 1820 aa25.28■■□□□ 1.64
SMPD3-203ENST00000563226 FYB1O15117 783 aa25.26■■□□□ 1.63
SMPD3-203ENST00000563226 DUSP27Q5VZP5 1158 aa25.25■■□□□ 1.63
SMPD3-203ENST00000563226 HDGFL2Q7Z4V5 671 aaPredicted RBP25.25■■□□□ 1.63
SMPD3-203ENST00000563226 FAM135BQ49AJ0 1406 aa25.25■■□□□ 1.63
SMPD3-203ENST00000563226 GOLGA2Q08379 1002 aa25.25■■□□□ 1.63
SMPD3-203ENST00000563226 PLEKHG1Q9ULL1 1385 aa25.24■■□□□ 1.63
SMPD3-203ENST00000563226 MED14O60244 1454 aa25.24■■□□□ 1.63
SMPD3-203ENST00000563226 WASLO00401 505 aaPredicted RBP25.24■■□□□ 1.63
SMPD3-203ENST00000563226 ATP7BP35670 1465 aa25.23■■□□□ 1.63
SMPD3-203ENST00000563226 ROBO2Q9HCK4 1378 aa25.22■■□□□ 1.63
SMPD3-203ENST00000563226 CFAP53Q96M91 514 aa25.22■■□□□ 1.63
SMPD3-203ENST00000563226 SPINK5Q9NQ38 1064 aaPredicted RBP25.22■■□□□ 1.63
SMPD3-203ENST00000563226 SLFN5Q08AF3 891 aa25.21■■□□□ 1.63
SMPD3-203ENST00000563226 SIRT1Q96EB6 747 aa25.21■■□□□ 1.63
SMPD3-203ENST00000563226 SLIT1O75093 1534 aa25.2■■□□□ 1.62
SMPD3-203ENST00000563226 IQSEC2Q5JU85 1478 aa25.2■■□□□ 1.62
SMPD3-203ENST00000563226 DMRT2Q9Y5R5 561 aa25.19■■□□□ 1.62
SMPD3-203ENST00000563226 ARHGAP23Q9P227 1491 aa25.19■■□□□ 1.62
SMPD3-203ENST00000563226 PPIP5K1Q6PFW1 1433 aa25.19■■□□□ 1.62
SMPD3-203ENST00000563226 PLIN1O60240 522 aa25.18■■□□□ 1.62
SMPD3-203ENST00000563226 COL3A1P02461 1466 aaPredicted RBP25.18■■□□□ 1.62
SMPD3-203ENST00000563226 TRMT2AQ8IZ69 625 aaKnown RBP25.17■■□□□ 1.62
SMPD3-203ENST00000563226 EXOC6Q8TAG9 804 aa25.17■■□□□ 1.62
SMPD3-203ENST00000563226 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.17■■□□□ 1.62
SMPD3-203ENST00000563226 NCKAP5LQ9HCH0 1330 aa25.17■■□□□ 1.62
SMPD3-203ENST00000563226 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.16■■□□□ 1.62
SMPD3-203ENST00000563226 RUNDC1Q96C34 613 aa25.16■■□□□ 1.62
SMPD3-203ENST00000563226 SLC26A8Q96RN1 970 aa25.16■■□□□ 1.62
SMPD3-203ENST00000563226 CPSF1Q10570 1443 aaKnown RBP25.16■■□□□ 1.62
SMPD3-203ENST00000563226 PTPRUQ92729 1446 aa25.16■■□□□ 1.62
SMPD3-203ENST00000563226 NUDT16Q96DE0 195 aaKnown RBP25.15■■□□□ 1.62
SMPD3-203ENST00000563226 CCDC136Q96JN2 1154 aa25.14■■□□□ 1.62
SMPD3-203ENST00000563226 RRP7AQ9Y3A4 280 aaKnown RBP25.14■■□□□ 1.61
SMPD3-203ENST00000563226 EID1Q9Y6B2 187 aa25.14■■□□□ 1.61
SMPD3-203ENST00000563226 CDC42BPGQ6DT37 1551 aa25.13■■□□□ 1.61
SMPD3-203ENST00000563226 WWC1Q8IX03 1113 aa25.13■■□□□ 1.61
SMPD3-203ENST00000563226 TCP11L2Q8N4U5 519 aa25.13■■□□□ 1.61
SMPD3-203ENST00000563226 NGEFQ8N5V2 710 aa25.13■■□□□ 1.61
SMPD3-203ENST00000563226 MON2Q7Z3U7 1717 aa25.12■■□□□ 1.61
SMPD3-203ENST00000563226 ADGRB2O60241 1585 aa25.12■■□□□ 1.61
SMPD3-203ENST00000563226 PRR36Q9H6K5 1346 aa25.12■■□□□ 1.61
SMPD3-203ENST00000563226 U2AF1L5P0DN76 240 aaPredicted RBP25.11■■□□□ 1.61
SMPD3-203ENST00000563226 U2AF1Q01081 240 aaKnown RBP eCLIP25.11■■□□□ 1.61
SMPD3-203ENST00000563226 NEUROD2Q15784 382 aa25.11■■□□□ 1.61
SMPD3-203ENST00000563226 RIMS1Q86UR5 1692 aaKnown RBP25.11■■□□□ 1.61
SMPD3-203ENST00000563226 AKAP12Q02952 1782 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms