RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ADGRF5Q8IZF2 1346 aa17.41■□□□□ 0.38
USP3-220ENST00000561381 CCDC144AA2RUR9 1427 aa17.39■□□□□ 0.38
USP3-220ENST00000561381 ZNF772Q68DY9 489 aaPredicted RBP17.39■□□□□ 0.37
USP3-220ENST00000561381 LRRC59Q96AG4 307 aaKnown RBP17.39■□□□□ 0.37
USP3-220ENST00000561381 ORAI2Q96SN7 254 aa17.39■□□□□ 0.37
USP3-220ENST00000561381 SPINK5Q9NQ38 1064 aaPredicted RBP17.39■□□□□ 0.37
USP3-220ENST00000561381 SPATA31E1Q6ZUB1 1445 aa17.38■□□□□ 0.37
USP3-220ENST00000561381 PRAG1Q86YV5 1406 aa17.38■□□□□ 0.37
USP3-220ENST00000561381 SLC4A2P04920 1241 aa17.38■□□□□ 0.37
USP3-220ENST00000561381 PNPLA6Q8IY17 1366 aa17.38■□□□□ 0.37
USP3-220ENST00000561381 AFF2P51816 1311 aa17.35■□□□□ 0.37
USP3-220ENST00000561381 STK26Q9P289 416 aa17.34■□□□□ 0.37
USP3-220ENST00000561381 TMEM132EQ6IEE7 984 aa17.33■□□□□ 0.36
USP3-220ENST00000561381 WAPLQ7Z5K2 1190 aa17.33■□□□□ 0.36
USP3-220ENST00000561381 IFT172Q9UG01 1749 aa17.33■□□□□ 0.36
USP3-220ENST00000561381 LAMC1P11047 1609 aa17.32■□□□□ 0.36
USP3-220ENST00000561381 ANKRD30BQ9BXX2 1392 aa17.32■□□□□ 0.36
USP3-220ENST00000561381 SOS2Q07890 1332 aaPredicted RBP17.32■□□□□ 0.36
USP3-220ENST00000561381 RXRBP28702 533 aa17.32■□□□□ 0.36
USP3-220ENST00000561381 C8orf37Q96NL8 207 aa17.32■□□□□ 0.36
USP3-220ENST00000561381 LRPPRCP42704 1394 aaKnown RBP17.3■□□□□ 0.36
USP3-220ENST00000561381 PLEKHH1Q9ULM0 1364 aa17.3■□□□□ 0.36
USP3-220ENST00000561381 ADAMTS2O95450 1211 aa17.3■□□□□ 0.36
USP3-220ENST00000561381 TECPR2O15040 1411 aa17.3■□□□□ 0.36
USP3-220ENST00000561381 PIK3C2GO75747 1445 aa17.3■□□□□ 0.36
USP3-220ENST00000561381 CDC42BPGQ6DT37 1551 aa17.29■□□□□ 0.36
USP3-220ENST00000561381 NUTM2FA1L443 756 aa17.29■□□□□ 0.36
USP3-220ENST00000561381 CAPN15O75808 1086 aa17.29■□□□□ 0.36
USP3-220ENST00000561381 ESCO1Q5FWF5 840 aa17.29■□□□□ 0.36
USP3-220ENST00000561381 DSG3P32926 999 aa17.28■□□□□ 0.36
USP3-220ENST00000561381 ABCC11Q96J66 1382 aa17.28■□□□□ 0.36
USP3-220ENST00000561381 XPCQ01831 940 aaPredicted RBP17.26■□□□□ 0.35
USP3-220ENST00000561381 UPF1Q92900 1129 aaKnown RBP eCLIP17.26■□□□□ 0.35
USP3-220ENST00000561381 NGLY1Q96IV0 654 aa17.26■□□□□ 0.35
USP3-220ENST00000561381 QTRT2Q9H974 415 aaKnown RBP17.26■□□□□ 0.35
USP3-220ENST00000561381 RAB3GAP2Q9H2M9 1393 aa17.26■□□□□ 0.35
USP3-220ENST00000561381 YTHDC2Q9H6S0 1430 aaKnown RBP17.25■□□□□ 0.35
USP3-220ENST00000561381 FOXO3O43524 673 aa17.25■□□□□ 0.35
USP3-220ENST00000561381 CDK12Q9NYV4 1490 aaPredicted RBP17.24■□□□□ 0.35
USP3-220ENST00000561381 KNDC1Q76NI1 1749 aa17.24■□□□□ 0.35
USP3-220ENST00000561381 NPHP3Q7Z494 1330 aa17.24■□□□□ 0.35
USP3-220ENST00000561381 CFAP70Q5T0N1 1121 aa17.24■□□□□ 0.35
USP3-220ENST00000561381 C14orf93Q9H972 538 aaKnown RBP17.24■□□□□ 0.35
USP3-220ENST00000561381 PXDNQ92626 1479 aa17.24■□□□□ 0.35
USP3-220ENST00000561381 NRXN1Q9ULB1 1477 aa17.23■□□□□ 0.35
USP3-220ENST00000561381 RGS12O14924 1447 aa17.22■□□□□ 0.35
USP3-220ENST00000561381 RBM6P78332 1123 aaKnown RBP17.22■□□□□ 0.35
USP3-220ENST00000561381 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.35
USP3-220ENST00000561381 COL22A1Q8NFW1 1626 aaPredicted RBP17.21■□□□□ 0.35
USP3-220ENST00000561381 MYOM2P54296 1465 aa17.2■□□□□ 0.34
USP3-220ENST00000561381 USP21Q9UK80 565 aa17.2■□□□□ 0.34
USP3-220ENST00000561381 FMN2Q9NZ56 1722 aa17.19■□□□□ 0.34
USP3-220ENST00000561381 DHX57Q6P158 1386 aaKnown RBP17.18■□□□□ 0.34
USP3-220ENST00000561381 SAFB2Q14151 953 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP3-220ENST00000561381 FNBP4Q8N3X1 1017 aaPredicted RBP17.18■□□□□ 0.34
USP3-220ENST00000561381 SIRT1Q96EB6 747 aa17.18■□□□□ 0.34
USP3-220ENST00000561381 PRAM1Q96QH2 718 aa17.17■□□□□ 0.34
USP3-220ENST00000561381 TRPC5Q9UL62 973 aaPredicted RBP17.15■□□□□ 0.34
USP3-220ENST00000561381 RGPD8O14715 1765 aaPredicted RBP17.15■□□□□ 0.34
USP3-220ENST00000561381 ATRNO75882 1429 aa17.14■□□□□ 0.33
USP3-220ENST00000561381 KDM2AQ9Y2K7 1162 aa17.14■□□□□ 0.33
USP3-220ENST00000561381 SPATA31A3Q5VYP0 1347 aa17.14■□□□□ 0.33
USP3-220ENST00000561381 BCL9LQ86UU0 1499 aa17.13■□□□□ 0.33
USP3-220ENST00000561381 KRT28Q7Z3Y7 464 aa17.13■□□□□ 0.33
USP3-220ENST00000561381 PHF8Q9UPP1 1060 aa17.13■□□□□ 0.33
USP3-220ENST00000561381 KIF1AQ12756 1690 aa17.13■□□□□ 0.33
USP3-220ENST00000561381 ADGRB1O14514 1584 aa17.12■□□□□ 0.33
USP3-220ENST00000561381 MARF1Q9Y4F3 1742 aaKnown RBP17.12■□□□□ 0.33
USP3-220ENST00000561381 DCAF11Q8TEB1 546 aa17.11■□□□□ 0.33
USP3-220ENST00000561381 POGKQ9P215 609 aa17.11■□□□□ 0.33
USP3-220ENST00000561381 TRAK1Q9UPV9 953 aa17.11■□□□□ 0.33
USP3-220ENST00000561381 DLC1Q96QB1 1528 aa17.11■□□□□ 0.33
USP3-220ENST00000561381 PLEKHG5O94827 1062 aa17.1■□□□□ 0.33
USP3-220ENST00000561381 HIRIP3Q9BW71 556 aaPredicted RBP17.09■□□□□ 0.33
USP3-220ENST00000561381 USP32Q8NFA0 1604 aa17.08■□□□□ 0.32
USP3-220ENST00000561381 PMFBP1Q8TBY8 1022 aa17.08■□□□□ 0.32
USP3-220ENST00000561381 CABLES1Q8TDN4 633 aa17.08■□□□□ 0.32
USP3-220ENST00000561381 TNS3Q68CZ2 1445 aa17.07■□□□□ 0.32
USP3-220ENST00000561381 MINK1Q8N4C8 1332 aaPredicted RBP17.07■□□□□ 0.32
USP3-220ENST00000561381 ATAD2Q6PL18 1390 aa17.06■□□□□ 0.32
USP3-220ENST00000561381 HRCP23327 699 aa17.06■□□□□ 0.32
USP3-220ENST00000561381 PSME1Q06323 249 aa17.06■□□□□ 0.32
USP3-220ENST00000561381 GJD4Q96KN9 370 aaPredicted RBP17.06■□□□□ 0.32
USP3-220ENST00000561381 SLIT2O94813 1529 aa17.06■□□□□ 0.32
USP3-220ENST00000561381 LMOD2Q6P5Q4 547 aa17.05■□□□□ 0.32
USP3-220ENST00000561381 UNC5CLQ8IV45 518 aa17.05■□□□□ 0.32
USP3-220ENST00000561381 ADGRB2O60241 1585 aa17.05■□□□□ 0.32
USP3-220ENST00000561381 ANKARQ7Z5J8 1434 aa17.04■□□□□ 0.32
USP3-220ENST00000561381 SBNO1A3KN83 1393 aa17.04■□□□□ 0.32
USP3-220ENST00000561381 PRR36Q9H6K5 1346 aa17.04■□□□□ 0.32
USP3-220ENST00000561381 HAP1P54257 671 aaPredicted RBP17.03■□□□□ 0.32
USP3-220ENST00000561381 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.02■□□□□ 0.32
USP3-220ENST00000561381 RALGAPBQ86X10 1494 aa17.02■□□□□ 0.32
USP3-220ENST00000561381 GLI3P10071 1580 aa17.02■□□□□ 0.31
USP3-220ENST00000561381 WASLO00401 505 aaPredicted RBP17.01■□□□□ 0.31
USP3-220ENST00000561381 ARHGEF10O15013 1369 aa17.01■□□□□ 0.31
USP3-220ENST00000561381 SAMD1Q6SPF0 538 aaPredicted RBP17■□□□□ 0.31
USP3-220ENST00000561381 STAC3Q96MF2 364 aa17■□□□□ 0.31
USP3-220ENST00000561381 ABCA3Q99758 1704 aa17■□□□□ 0.31
USP3-220ENST00000561381 TULP4Q9NRJ4 1543 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms