RNA–Protein interactions for RNA: ENST00000560734.5

SHF-208, Transcript of Src homology 2 domain containing F, human

TSL 3 BASIC

Gene SHF, Length 1,731 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHF-208	ENST00000560734	ATAD2	Q6PL18	1390 aa		33.58	■■■□□ 2.97
SHF-208	ENST00000560734	NRXN3	Q9Y4C0	1643 aa		33.58	■■■□□ 2.97
SHF-208	ENST00000560734	SLC12A5	Q9H2X9	1139 aa		33.57	■■■□□ 2.96
SHF-208	ENST00000560734	NSD2	O96028	1365 aa		33.57	■■■□□ 2.96
SHF-208	ENST00000560734	NSD3	Q9BZ95	1437 aa		33.57	■■■□□ 2.96
SHF-208	ENST00000560734	STK26	Q9P289	416 aa		33.56	■■■□□ 2.96
SHF-208	ENST00000560734	PRAM1	Q96QH2	718 aa		33.55	■■■□□ 2.96
SHF-208	ENST00000560734	POGK	Q9P215	609 aa		33.55	■■■□□ 2.96
SHF-208	ENST00000560734	TMEM2	Q9UHN6	1383 aa		33.55	■■■□□ 2.96
SHF-208	ENST00000560734	SIRT1	Q96EB6	747 aa		33.54	■■■□□ 2.96
SHF-208	ENST00000560734	CGNL1	Q0VF96	1302 aa		33.51	■■■□□ 2.96
SHF-208	ENST00000560734	KNDC1	Q76NI1	1749 aa		33.49	■■■□□ 2.95
SHF-208	ENST00000560734	TECPR2	O15040	1411 aa		33.49	■■■□□ 2.95
SHF-208	ENST00000560734	WDR43	Q15061	677 aa	Known RBP eCLIP	33.48	■■■□□ 2.95
SHF-208	ENST00000560734	POLR3A	O14802	1390 aa	Predicted RBP	33.47	■■■□□ 2.95
SHF-208	ENST00000560734	CABP2	Q9NPB3	220 aa		33.47	■■■□□ 2.95
SHF-208	ENST00000560734	C3	P01024	1663 aa		33.46	■■■□□ 2.95
SHF-208	ENST00000560734	FAM135B	Q49AJ0	1406 aa		33.46	■■■□□ 2.95
SHF-208	ENST00000560734	RNF123	Q5XPI4	1314 aa		33.45	■■■□□ 2.95
SHF-208	ENST00000560734	FER1L4	A9Z1Z3	1794 aa		33.45	■■■□□ 2.95
SHF-208	ENST00000560734	ADAMTS8	Q9UP79	889 aa		33.45	■■■□□ 2.94
SHF-208	ENST00000560734	SRPK2	P78362	688 aa	Known RBP	33.44	■■■□□ 2.94
SHF-208	ENST00000560734	MORC1	Q86VD1	984 aa		33.42	■■■□□ 2.94
SHF-208	ENST00000560734	MINK1	Q8N4C8	1332 aa	Predicted RBP	33.41	■■■□□ 2.94
SHF-208	ENST00000560734	PLEKHG1	Q9ULL1	1385 aa		33.41	■■■□□ 2.94
SHF-208	ENST00000560734	SAFB2	Q14151	953 aa	Known RBP eCLIP	33.41	■■■□□ 2.94
SHF-208	ENST00000560734	TERF2IP	Q9NYB0	399 aa		33.41	■■■□□ 2.94
SHF-208	ENST00000560734	MED14	O60244	1454 aa		33.4	■■■□□ 2.94
SHF-208	ENST00000560734	CPS1	P31327	1500 aa		33.39	■■■□□ 2.94
SHF-208	ENST00000560734	SLIT1	O75093	1534 aa		33.39	■■■□□ 2.94
SHF-208	ENST00000560734	MET	P08581	1390 aa		33.38	■■■□□ 2.93
SHF-208	ENST00000560734	ARHGAP23	Q9P227	1491 aa		33.38	■■■□□ 2.93
SHF-208	ENST00000560734	NGEF	Q8N5V2	710 aa		33.37	■■■□□ 2.93
SHF-208	ENST00000560734	CDK19	Q9BWU1	502 aa		33.37	■■■□□ 2.93
SHF-208	ENST00000560734		A0A1W2PP64	1363 aa		33.37	■■■□□ 2.93
SHF-208	ENST00000560734	CD163L1	Q9NR16	1453 aa		33.34	■■■□□ 2.93
SHF-208	ENST00000560734	ADAMTS13	Q76LX8	1427 aa		33.34	■■■□□ 2.93
SHF-208	ENST00000560734	ATP7B	P35670	1465 aa		33.33	■■■□□ 2.93
SHF-208	ENST00000560734	SENP3	Q9H4L4	574 aa	Predicted RBP	33.31	■■■□□ 2.92
SHF-208	ENST00000560734	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	33.3	■■■□□ 2.92
SHF-208	ENST00000560734	BCAN	Q96GW7	911 aa		33.29	■■■□□ 2.92
SHF-208	ENST00000560734	EID1	Q9Y6B2	187 aa		33.29	■■■□□ 2.92
SHF-208	ENST00000560734	PLEKHH1	Q9ULM0	1364 aa		33.29	■■■□□ 2.92
SHF-208	ENST00000560734	ANKRD26	Q9UPS8	1709 aa		33.29	■■■□□ 2.92
SHF-208	ENST00000560734	CEBPA	P49715	358 aa	Predicted RBP	33.28	■■■□□ 2.92
SHF-208	ENST00000560734	WAPL	Q7Z5K2	1190 aa		33.28	■■■□□ 2.92
SHF-208	ENST00000560734	PPP4R2	Q9NY27	417 aa		33.26	■■■□□ 2.92
SHF-208	ENST00000560734	WASL	O00401	505 aa	Predicted RBP	33.25	■■■□□ 2.91
SHF-208	ENST00000560734	THEMIS	Q8N1K5	641 aa	Predicted RBP	33.25	■■■□□ 2.91
SHF-208	ENST00000560734	ZNF521	Q96K83	1311 aa		33.24	■■■□□ 2.91
SHF-208	ENST00000560734	LTK	P29376	864 aa		33.24	■■■□□ 2.91
SHF-208	ENST00000560734	TXNDC2	Q86VQ3	553 aa		33.24	■■■□□ 2.91
SHF-208	ENST00000560734	CFAP53	Q96M91	514 aa		33.24	■■■□□ 2.91
SHF-208	ENST00000560734	SHPRH	Q149N8	1683 aa		33.23	■■■□□ 2.91
SHF-208	ENST00000560734	DIP2A	Q14689	1571 aa		33.23	■■■□□ 2.91
SHF-208	ENST00000560734	ADGRB2	O60241	1585 aa		33.22	■■■□□ 2.91
SHF-208	ENST00000560734	CABP1	Q9NZU7	370 aa		33.2	■■■□□ 2.91
SHF-208	ENST00000560734	TBX22	Q9Y458	520 aa		33.19	■■■□□ 2.9
SHF-208	ENST00000560734	FYB1	O15117	783 aa		33.17	■■■□□ 2.9
SHF-208	ENST00000560734	MTHFS	P49914	203 aa		33.17	■■■□□ 2.9
SHF-208	ENST00000560734	CPSF1	Q10570	1443 aa	Known RBP	33.17	■■■□□ 2.9
SHF-208	ENST00000560734	IRX6	P78412	446 aa	Predicted RBP	33.16	■■■□□ 2.9
SHF-208	ENST00000560734	NCBP3	Q53F19	620 aa	Known RBP	33.16	■■■□□ 2.9
SHF-208	ENST00000560734	RCAN3	Q9UKA8	241 aa		33.16	■■■□□ 2.9
SHF-208	ENST00000560734	SALL2	Q9Y467	1007 aa	Predicted RBP	33.16	■■■□□ 2.9
SHF-208	ENST00000560734	KIF20B	Q96Q89	1820 aa		33.15	■■■□□ 2.9
SHF-208	ENST00000560734	SENP3-EIF4A1	A0A087X0R7	540 aa		33.15	■■■□□ 2.9
SHF-208	ENST00000560734	TSHZ2	Q9NRE2	1034 aa		33.14	■■■□□ 2.89
SHF-208	ENST00000560734	ROBO2	Q9HCK4	1378 aa		33.13	■■■□□ 2.89
SHF-208	ENST00000560734	CDCA7L	Q96GN5	454 aa		33.13	■■■□□ 2.89
SHF-208	ENST00000560734	ADAMTSL3	P82987	1691 aa		33.12	■■■□□ 2.89
SHF-208	ENST00000560734	GOLGA2	Q08379	1002 aa		33.11	■■■□□ 2.89
SHF-208	ENST00000560734	EDC4	Q6P2E9	1401 aa	Known RBP	33.11	■■■□□ 2.89
SHF-208	ENST00000560734	CDC42BPG	Q6DT37	1551 aa		33.11	■■■□□ 2.89
SHF-208	ENST00000560734	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.11	■■■□□ 2.89
SHF-208	ENST00000560734	PPIP5K1	Q6PFW1	1433 aa		33.11	■■■□□ 2.89
SHF-208	ENST00000560734	CCDC61	Q9Y6R9	512 aa		33.11	■■■□□ 2.89
SHF-208	ENST00000560734	PTCH1	Q13635	1447 aa		33.1	■■■□□ 2.89
SHF-208	ENST00000560734	TNNT2	P45379	298 aa	Predicted RBP	33.09	■■■□□ 2.89
SHF-208	ENST00000560734	RRP1	P56182	461 aa	Known RBP	33.08	■■■□□ 2.89
SHF-208	ENST00000560734	NUDT16	Q96DE0	195 aa	Known RBP	33.08	■■■□□ 2.89
SHF-208	ENST00000560734	APAF1	O14727	1248 aa		33.07	■■■□□ 2.88
SHF-208	ENST00000560734	RUNDC1	Q96C34	613 aa		33.07	■■■□□ 2.88
SHF-208	ENST00000560734	GGNBP2	Q9H3C7	697 aa		33.07	■■■□□ 2.88
SHF-208	ENST00000560734	PIK3R4	Q99570	1358 aa		33.06	■■■□□ 2.88
SHF-208	ENST00000560734	TRMT2A	Q8IZ69	625 aa	Known RBP	33.06	■■■□□ 2.88
SHF-208	ENST00000560734	RIMS1	Q86UR5	1692 aa	Known RBP	33.06	■■■□□ 2.88
SHF-208	ENST00000560734	PTPRU	Q92729	1446 aa		33.05	■■■□□ 2.88
SHF-208	ENST00000560734	CCDC146	Q8IYE0	955 aa		33.05	■■■□□ 2.88
SHF-208	ENST00000560734	ZNF692	Q9BU19	519 aa	Predicted RBP	33.04	■■■□□ 2.88
SHF-208	ENST00000560734	MON2	Q7Z3U7	1717 aa		33.04	■■■□□ 2.88
SHF-208	ENST00000560734	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	33.04	■■■□□ 2.88
SHF-208	ENST00000560734	SLFN5	Q08AF3	891 aa		33.03	■■■□□ 2.88
SHF-208	ENST00000560734	DUSP27	Q5VZP5	1158 aa		33.03	■■■□□ 2.88
SHF-208	ENST00000560734	COL3A1	P02461	1466 aa	Predicted RBP	33.03	■■■□□ 2.88
SHF-208	ENST00000560734	ZNF142	P52746	1687 aa	Predicted RBP	33.03	■■■□□ 2.88
SHF-208	ENST00000560734	PNPLA6	Q8IY17	1366 aa		33.03	■■■□□ 2.88
SHF-208	ENST00000560734	IQSEC2	Q5JU85	1478 aa		33.03	■■■□□ 2.88
SHF-208	ENST00000560734	AKAP12	Q02952	1782 aa		33.02	■■■□□ 2.88
SHF-208	ENST00000560734	TOPAZ1	Q8N9V7	1692 aa		32.99	■■■□□ 2.87

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms