RNA–Protein interactions for RNA: ENST00000560549.5

TMOD3-207, Transcript of tropomodulin 3, humanhuman

TSL 1 (best)

Gene TMOD3, Length 1,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMOD3-207ENST00000560549 GFRA3O60609 400 aa8.66□□□□□ -1.02
TMOD3-207ENST00000560549 LCE2BO14633 110 aa8.65□□□□□ -1.02
TMOD3-207ENST00000560549 Q3C1V9 767 aa8.65□□□□□ -1.02
TMOD3-207ENST00000560549 PRDM9Q9NQV7 894 aa8.65□□□□□ -1.02
TMOD3-207ENST00000560549 ZNF598Q86UK7 904 aaKnown RBP8.64□□□□□ -1.03
TMOD3-207ENST00000560549 SPIRE2Q8WWL2 714 aa8.64□□□□□ -1.03
TMOD3-207ENST00000560549 BEGAINQ9BUH8 593 aa8.64□□□□□ -1.03
TMOD3-207ENST00000560549 MMP16P51512 607 aa8.63□□□□□ -1.03
TMOD3-207ENST00000560549 PRR20EP86478 221 aa8.63□□□□□ -1.03
TMOD3-207ENST00000560549 PRR20CP86479 221 aa8.63□□□□□ -1.03
TMOD3-207ENST00000560549 PRR20DP86480 221 aa8.63□□□□□ -1.03
TMOD3-207ENST00000560549 PRR20BP86481 221 aa8.63□□□□□ -1.03
TMOD3-207ENST00000560549 PRR20AP86496 221 aa8.63□□□□□ -1.03
TMOD3-207ENST00000560549 Q6ZNB5 142 aa8.62□□□□□ -1.03
TMOD3-207ENST00000560549 SYMPKQ92797 1274 aaKnown RBP8.62□□□□□ -1.03
TMOD3-207ENST00000560549 GPBP1L1Q9HC44 474 aaPredicted RBP8.62□□□□□ -1.03
TMOD3-207ENST00000560549 PCDHGC3Q9UN70 934 aa8.62□□□□□ -1.03
TMOD3-207ENST00000560549 PDZRN3Q9UPQ7 1066 aa8.62□□□□□ -1.03
TMOD3-207ENST00000560549 MOXD2PA6NHM9 499 aa8.61□□□□□ -1.03
TMOD3-207ENST00000560549 NDUFV2P19404 249 aa8.61□□□□□ -1.03
TMOD3-207ENST00000560549 RPIAP49247 311 aa8.61□□□□□ -1.03
TMOD3-207ENST00000560549 FCF1Q9Y324 198 aaKnown RBP8.61□□□□□ -1.03
TMOD3-207ENST00000560549 GDF9O60383 454 aa8.6□□□□□ -1.03
TMOD3-207ENST00000560549 DXOO77932 396 aaKnown RBP8.6□□□□□ -1.03
TMOD3-207ENST00000560549 USB1Q9BQ65 265 aaKnown RBP8.6□□□□□ -1.03
TMOD3-207ENST00000560549 ZNF697Q5TEC3 545 aa8.59□□□□□ -1.03
TMOD3-207ENST00000560549 NUTM1Q86Y26 1132 aa8.59□□□□□ -1.03
TMOD3-207ENST00000560549 TBC1D2Q9BYX2 928 aa8.57□□□□□ -1.04
TMOD3-207ENST00000560549 FDX1P10109 184 aa8.56□□□□□ -1.04
TMOD3-207ENST00000560549 TRAF7Q6Q0C0 670 aa8.56□□□□□ -1.04
TMOD3-207ENST00000560549 PKD2L1Q9P0L9 805 aa8.56□□□□□ -1.04
TMOD3-207ENST00000560549 GJA5P36382 358 aa8.55□□□□□ -1.04
TMOD3-207ENST00000560549 KDM4CQ9H3R0 1056 aa8.55□□□□□ -1.04
TMOD3-207ENST00000560549 RSBN1LQ6PCB5 846 aaPredicted RBP8.54□□□□□ -1.04
TMOD3-207ENST00000560549 RETREG3Q86VR2 466 aa8.54□□□□□ -1.04
TMOD3-207ENST00000560549 PCDHB15Q9Y5E8 787 aa8.54□□□□□ -1.04
TMOD3-207ENST00000560549 MYSM1Q5VVJ2 828 aa8.53□□□□□ -1.04
TMOD3-207ENST00000560549 LIMD1Q9UGP4 676 aa8.53□□□□□ -1.04
TMOD3-207ENST00000560549 CD2BP2O95400 341 aaKnown RBP8.52□□□□□ -1.05
TMOD3-207ENST00000560549 JUNDP17535 347 aa8.52□□□□□ -1.05
TMOD3-207ENST00000560549 FAM117AQ9C073 453 aa8.52□□□□□ -1.05
TMOD3-207ENST00000560549 DGAT1O75907 488 aa8.51□□□□□ -1.05
TMOD3-207ENST00000560549 PLEKHG3A1L390 1219 aa8.51□□□□□ -1.05
TMOD3-207ENST00000560549 SPTLC1O15269 473 aa8.51□□□□□ -1.05
TMOD3-207ENST00000560549 DIXDC1Q155Q3 683 aa8.51□□□□□ -1.05
TMOD3-207ENST00000560549 C6orf229H3BNL8 230 aa8.5□□□□□ -1.05
TMOD3-207ENST00000560549 TNFRSF10AO00220 468 aa8.5□□□□□ -1.05
TMOD3-207ENST00000560549 TRIM32Q13049 653 aa8.5□□□□□ -1.05
TMOD3-207ENST00000560549 FBXO31Q5XUX0 539 aaPredicted RBP8.5□□□□□ -1.05
TMOD3-207ENST00000560549 RIC3Q7Z5B4 369 aa8.49□□□□□ -1.05
TMOD3-207ENST00000560549 TOR4AQ9NXH8 423 aa8.49□□□□□ -1.05
TMOD3-207ENST00000560549 QPCTQ16769 361 aa8.48□□□□□ -1.05
TMOD3-207ENST00000560549 CABLES1Q8TDN4 633 aa8.48□□□□□ -1.05
TMOD3-207ENST00000560549 SPDYE5A6NIY4 337 aa8.47□□□□□ -1.05
TMOD3-207ENST00000560549 WNT7AO00755 349 aa8.47□□□□□ -1.05
TMOD3-207ENST00000560549 ZBTB24O43167 697 aaPredicted RBP8.47□□□□□ -1.05
TMOD3-207ENST00000560549 HRCP23327 699 aa8.47□□□□□ -1.05
TMOD3-207ENST00000560549 BRPF1P55201 1214 aaPredicted RBP8.47□□□□□ -1.05
TMOD3-207ENST00000560549 MTMR2Q13614 643 aa8.47□□□□□ -1.05
TMOD3-207ENST00000560549 CSPP1Q1MSJ5 1256 aa8.47□□□□□ -1.05
TMOD3-207ENST00000560549 DESI1Q6ICB0 168 aa8.47□□□□□ -1.05
TMOD3-207ENST00000560549 CFAP99D6REC4 459 aa8.46□□□□□ -1.05
TMOD3-207ENST00000560549 MYT1Q01538 1121 aa8.46□□□□□ -1.05
TMOD3-207ENST00000560549 FOXC1Q12948 553 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 TUSC1Q2TAM9 212 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 PKDCCQ504Y2 493 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 PRR7Q8TB68 274 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 PTPRNQ16849 979 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 NUDT12Q9BQG2 462 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 POLR3EQ9NVU0 708 aa8.45□□□□□ -1.06
TMOD3-207ENST00000560549 AVPP01185 164 aa8.44□□□□□ -1.06
TMOD3-207ENST00000560549 CLK2P49760 499 aaKnown RBP8.44□□□□□ -1.06
TMOD3-207ENST00000560549 NEUROD2Q15784 382 aa8.44□□□□□ -1.06
TMOD3-207ENST00000560549 PRPF38BQ5VTL8 546 aaKnown RBP8.44□□□□□ -1.06
TMOD3-207ENST00000560549 PTCRAQ6ISU1 281 aaPredicted RBP8.44□□□□□ -1.06
TMOD3-207ENST00000560549 FAM187AA6NFU0 413 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 LILRB3O75022 631 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 CCNYL3P0C7X3 344 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 WNT7BP56706 349 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 SKOR1P84550 965 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 CRIPAKQ8N1N5 446 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 CCDC24Q8N4L8 307 aa8.43□□□□□ -1.06
TMOD3-207ENST00000560549 RTL5Q5HYW3 569 aaPredicted RBP8.42□□□□□ -1.06
TMOD3-207ENST00000560549 PROCA1Q8NCQ7 364 aaPredicted RBP8.42□□□□□ -1.06
TMOD3-207ENST00000560549 ZBTB3Q9H5J0 574 aa8.42□□□□□ -1.06
TMOD3-207ENST00000560549 EVA1BQ9NVM1 165 aa8.42□□□□□ -1.06
TMOD3-207ENST00000560549 DDRGK1Q96HY6 314 aa8.41□□□□□ -1.06
TMOD3-207ENST00000560549 PER1O15534 1290 aaPredicted RBP8.4□□□□□ -1.06
TMOD3-207ENST00000560549 SH3D19Q5HYK7 790 aa8.4□□□□□ -1.06
TMOD3-207ENST00000560549 LYPD8Q6UX82 237 aa8.4□□□□□ -1.06
TMOD3-207ENST00000560549 CYP4X1Q8N118 509 aa8.4□□□□□ -1.06
TMOD3-207ENST00000560549 MRGPRX2Q96LB1 330 aa8.4□□□□□ -1.06
TMOD3-207ENST00000560549 SNIP1Q8TAD8 396 aaKnown RBP8.39□□□□□ -1.07
TMOD3-207ENST00000560549 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.39□□□□□ -1.07
TMOD3-207ENST00000560549 AAASQ9NRG9 546 aa8.39□□□□□ -1.07
TMOD3-207ENST00000560549 SMPD1P17405 629 aa8.38□□□□□ -1.07
TMOD3-207ENST00000560549 SMCPP49901 116 aaPredicted RBP8.38□□□□□ -1.07
TMOD3-207ENST00000560549 KCNH2Q12809 1159 aa8.38□□□□□ -1.07
TMOD3-207ENST00000560549 RC3H1Q5TC82 1133 aaKnown RBP8.38□□□□□ -1.07
TMOD3-207ENST00000560549 SKIV2LQ15477 1246 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms