RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 PRAM1Q96QH2 718 aa11.88□□□□□ -0.51
TRAF3-209ENST00000560463 SLC26A8Q96RN1 970 aa11.88□□□□□ -0.51
TRAF3-209ENST00000560463 POLR3GLQ9BT43 218 aa11.88□□□□□ -0.51
TRAF3-209ENST00000560463 LMTK3Q96Q04 1460 aa11.88□□□□□ -0.51
TRAF3-209ENST00000560463 NWD1Q149M9 1564 aa11.88□□□□□ -0.51
TRAF3-209ENST00000560463 AKAP12Q02952 1782 aa11.87□□□□□ -0.51
TRAF3-209ENST00000560463 PTPRUQ92729 1446 aa11.86□□□□□ -0.51
TRAF3-209ENST00000560463 ANP32CO43423 234 aa11.86□□□□□ -0.51
TRAF3-209ENST00000560463 NALCNQ8IZF0 1738 aa11.86□□□□□ -0.51
TRAF3-209ENST00000560463 ANKRD26Q9UPS8 1709 aa11.86□□□□□ -0.51
TRAF3-209ENST00000560463 USP32Q8NFA0 1604 aa11.86□□□□□ -0.51
TRAF3-209ENST00000560463 TOPAZ1Q8N9V7 1692 aa11.85□□□□□ -0.51
TRAF3-209ENST00000560463 NINLQ9Y2I6 1382 aa11.85□□□□□ -0.51
TRAF3-209ENST00000560463 MIER1Q8N108 512 aa11.85□□□□□ -0.51
TRAF3-209ENST00000560463 AMOTL2Q9Y2J4 779 aa11.85□□□□□ -0.51
TRAF3-209ENST00000560463 KIF20BQ96Q89 1820 aa11.85□□□□□ -0.51
TRAF3-209ENST00000560463 FMN2Q9NZ56 1722 aa11.85□□□□□ -0.51
TRAF3-209ENST00000560463 STRCP1A6NGW2 1772 aa11.84□□□□□ -0.51
TRAF3-209ENST00000560463 MON2Q7Z3U7 1717 aa11.83□□□□□ -0.52
TRAF3-209ENST00000560463 ATAD2Q6PL18 1390 aa11.83□□□□□ -0.52
TRAF3-209ENST00000560463 KTN1Q86UP2 1357 aaKnown RBP11.83□□□□□ -0.52
TRAF3-209ENST00000560463 ROBO2Q9HCK4 1378 aa11.83□□□□□ -0.52
TRAF3-209ENST00000560463 MINK1Q8N4C8 1332 aaPredicted RBP11.83□□□□□ -0.52
TRAF3-209ENST00000560463 NCKAP5LQ9HCH0 1330 aa11.83□□□□□ -0.52
TRAF3-209ENST00000560463 PLEKHH1Q9ULM0 1364 aa11.82□□□□□ -0.52
TRAF3-209ENST00000560463 XIRP1Q702N8 1843 aaKnown RBP11.82□□□□□ -0.52
TRAF3-209ENST00000560463 SAFB2Q14151 953 aaKnown RBP eCLIP11.82□□□□□ -0.52
TRAF3-209ENST00000560463 WAPLQ7Z5K2 1190 aa11.82□□□□□ -0.52
TRAF3-209ENST00000560463 NKTRP30414 1462 aaKnown RBP11.81□□□□□ -0.52
TRAF3-209ENST00000560463 CDC42BPGQ6DT37 1551 aa11.8□□□□□ -0.52
TRAF3-209ENST00000560463 CCER2I3L3R5 266 aa11.8□□□□□ -0.52
TRAF3-209ENST00000560463 PER1O15534 1290 aaPredicted RBP11.8□□□□□ -0.52
TRAF3-209ENST00000560463 SRPK2P78362 688 aaKnown RBP11.8□□□□□ -0.52
TRAF3-209ENST00000560463 CDK19Q9BWU1 502 aa11.8□□□□□ -0.52
TRAF3-209ENST00000560463 PANK3Q9H999 370 aa11.8□□□□□ -0.52
TRAF3-209ENST00000560463 WASLO00401 505 aaPredicted RBP11.79□□□□□ -0.52
TRAF3-209ENST00000560463 KCNA6P17658 529 aa11.79□□□□□ -0.52
TRAF3-209ENST00000560463 PRKRIP1Q9H875 184 aaPredicted RBP11.79□□□□□ -0.52
TRAF3-209ENST00000560463 ATP7BP35670 1465 aa11.78□□□□□ -0.52
TRAF3-209ENST00000560463 CABP2Q9NPB3 220 aa11.78□□□□□ -0.52
TRAF3-209ENST00000560463 KNSTRNQ9Y448 316 aa11.78□□□□□ -0.52
TRAF3-209ENST00000560463 ANKRD36BQ8N2N9 1353 aa11.78□□□□□ -0.52
TRAF3-209ENST00000560463 NPC1L1Q9UHC9 1359 aa11.78□□□□□ -0.52
TRAF3-209ENST00000560463 MAP2P11137 1827 aaKnown RBP11.76□□□□□ -0.53
TRAF3-209ENST00000560463 HSPA2P54652 639 aa11.76□□□□□ -0.53
TRAF3-209ENST00000560463 RALBP1Q15311 655 aa11.76□□□□□ -0.53
TRAF3-209ENST00000560463 TMC1Q8TDI8 760 aa11.76□□□□□ -0.53
TRAF3-209ENST00000560463 SLC12A5Q9H2X9 1139 aa11.75□□□□□ -0.53
TRAF3-209ENST00000560463 TERF2IPQ9NYB0 399 aa11.75□□□□□ -0.53
TRAF3-209ENST00000560463 ADGRL3Q9HAR2 1447 aa11.75□□□□□ -0.53
TRAF3-209ENST00000560463 NCOA3Q9Y6Q9 1424 aa11.75□□□□□ -0.53
TRAF3-209ENST00000560463 CD163L1Q9NR16 1453 aa11.75□□□□□ -0.53
TRAF3-209ENST00000560463 DMRT2Q9Y5R5 561 aa11.74□□□□□ -0.53
TRAF3-209ENST00000560463 PARD3Q8TEW0 1356 aa11.74□□□□□ -0.53
TRAF3-209ENST00000560463 PPIP5K1Q6PFW1 1433 aa11.74□□□□□ -0.53
TRAF3-209ENST00000560463 ANKARQ7Z5J8 1434 aa11.74□□□□□ -0.53
TRAF3-209ENST00000560463 NRKQ7Z2Y5 1582 aa11.74□□□□□ -0.53
TRAF3-209ENST00000560463 HDGFL2Q7Z4V5 671 aaPredicted RBP11.73□□□□□ -0.53
TRAF3-209ENST00000560463 NUDT16Q96DE0 195 aaKnown RBP11.73□□□□□ -0.53
TRAF3-209ENST00000560463 CCDC61Q9Y6R9 512 aa11.73□□□□□ -0.53
TRAF3-209ENST00000560463 KIF1AQ12756 1690 aa11.72□□□□□ -0.53
TRAF3-209ENST00000560463 NSD3Q9BZ95 1437 aa11.72□□□□□ -0.53
TRAF3-209ENST00000560463 A0A1W2PP64 1363 aa11.72□□□□□ -0.53
TRAF3-209ENST00000560463 NSD2O96028 1365 aa11.72□□□□□ -0.53
TRAF3-209ENST00000560463 AMER1Q5JTC6 1135 aaPredicted RBP11.72□□□□□ -0.53
TRAF3-209ENST00000560463 CPSF1Q10570 1443 aaKnown RBP11.71□□□□□ -0.53
TRAF3-209ENST00000560463 MYBBP1AQ9BQG0 1328 aaKnown RBP11.71□□□□□ -0.53
TRAF3-209ENST00000560463 CARD14Q9BXL6 1004 aa11.71□□□□□ -0.53
TRAF3-209ENST00000560463 CABP1Q9NZU7 370 aa11.71□□□□□ -0.53
TRAF3-209ENST00000560463 USP54Q70EL1 1684 aa11.71□□□□□ -0.54
TRAF3-209ENST00000560463 CGNL1Q0VF96 1302 aa11.7□□□□□ -0.54
TRAF3-209ENST00000560463 PROSER2Q86WR7 435 aaPredicted RBP11.7□□□□□ -0.54
TRAF3-209ENST00000560463 ZNF692Q9BU19 519 aaPredicted RBP11.7□□□□□ -0.54
TRAF3-209ENST00000560463 DCCP43146 1447 aa11.69□□□□□ -0.54
TRAF3-209ENST00000560463 BRD4O60885 1362 aaPredicted RBP11.69□□□□□ -0.54
TRAF3-209ENST00000560463 PLEKHG3A1L390 1219 aa11.69□□□□□ -0.54
TRAF3-209ENST00000560463 EDC4Q6P2E9 1401 aaKnown RBP11.69□□□□□ -0.54
TRAF3-209ENST00000560463 PRR36Q9H6K5 1346 aa11.68□□□□□ -0.54
TRAF3-209ENST00000560463 CC2D1BQ5T0F9 858 aaKnown RBP11.68□□□□□ -0.54
TRAF3-209ENST00000560463 NLRP13Q86W25 1043 aa11.67□□□□□ -0.54
TRAF3-209ENST00000560463 POLR3AO14802 1390 aaPredicted RBP11.67□□□□□ -0.54
TRAF3-209ENST00000560463 C14orf37Q86TY3 774 aa11.66□□□□□ -0.54
TRAF3-209ENST00000560463 C19orf44Q9H6X5 657 aa11.66□□□□□ -0.54
TRAF3-209ENST00000560463 MARF1Q9Y4F3 1742 aaKnown RBP11.66□□□□□ -0.54
TRAF3-209ENST00000560463 LRRC7Q96NW7 1537 aa11.65□□□□□ -0.54
TRAF3-209ENST00000560463 MRS2Q9HD23 443 aa11.65□□□□□ -0.54
TRAF3-209ENST00000560463 TMEM94Q12767 1356 aa11.65□□□□□ -0.55
TRAF3-209ENST00000560463 ACEP12821 1306 aa11.64□□□□□ -0.55
TRAF3-209ENST00000560463 USP6P35125 1406 aa11.64□□□□□ -0.55
TRAF3-209ENST00000560463 CNGB1Q14028 1251 aaPredicted RBP11.64□□□□□ -0.55
TRAF3-209ENST00000560463 PIK3C2AO00443 1686 aa11.64□□□□□ -0.55
TRAF3-209ENST00000560463 TRPM3Q9HCF6 1732 aaPredicted RBP11.63□□□□□ -0.55
TRAF3-209ENST00000560463 MORC1Q86VD1 984 aa11.63□□□□□ -0.55
TRAF3-209ENST00000560463 MSH6P52701 1360 aa11.63□□□□□ -0.55
TRAF3-209ENST00000560463 TTC21AQ8NDW8 1320 aa11.62□□□□□ -0.55
TRAF3-209ENST00000560463 SHPRHQ149N8 1683 aa11.62□□□□□ -0.55
TRAF3-209ENST00000560463 LTN1O94822 1766 aa11.62□□□□□ -0.55
TRAF3-209ENST00000560463 NUTM2FA1L443 756 aa11.62□□□□□ -0.55
TRAF3-209ENST00000560463 FYB1O15117 783 aa11.62□□□□□ -0.55
TRAF3-209ENST00000560463 PPP2R1AP30153 589 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms