RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EIF4G2P78344 907 aaKnown RBP eCLIP12.99□□□□□ -0.33
LDLR-210ENST00000559340 CENPJQ9HC77 1338 aaPredicted RBP12.98□□□□□ -0.33
LDLR-210ENST00000559340 PRAM1Q96QH2 718 aa12.98□□□□□ -0.33
LDLR-210ENST00000559340 MED1Q15648 1581 aaPredicted RBP12.98□□□□□ -0.33
LDLR-210ENST00000559340 ROBO2Q9HCK4 1378 aa12.96□□□□□ -0.33
LDLR-210ENST00000559340 WAPLQ7Z5K2 1190 aa12.96□□□□□ -0.33
LDLR-210ENST00000559340 TMEM94Q12767 1356 aa12.95□□□□□ -0.34
LDLR-210ENST00000559340 USP47Q96K76 1375 aa12.95□□□□□ -0.34
LDLR-210ENST00000559340 LRRC7Q96NW7 1537 aa12.95□□□□□ -0.34
LDLR-210ENST00000559340 C19orf44Q9H6X5 657 aa12.95□□□□□ -0.34
LDLR-210ENST00000559340 QRICH2Q9H0J4 1663 aa12.95□□□□□ -0.34
LDLR-210ENST00000559340 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
LDLR-210ENST00000559340 MSH6P52701 1360 aa12.94□□□□□ -0.34
LDLR-210ENST00000559340 ST20-MTHFSA0A0A6YYL1 179 aa12.93□□□□□ -0.34
LDLR-210ENST00000559340 ATF3P18847 181 aa12.93□□□□□ -0.34
LDLR-210ENST00000559340 SAFB2Q14151 953 aaKnown RBP eCLIP12.93□□□□□ -0.34
LDLR-210ENST00000559340 PHF23Q9BUL5 403 aaPredicted RBP12.93□□□□□ -0.34
LDLR-210ENST00000559340 CDCA8Q53HL2 280 aa12.92□□□□□ -0.34
LDLR-210ENST00000559340 CADPS2Q86UW7 1296 aa12.92□□□□□ -0.34
LDLR-210ENST00000559340 ADGRL3Q9HAR2 1447 aa12.92□□□□□ -0.34
LDLR-210ENST00000559340 SBNO2Q9Y2G9 1366 aa12.92□□□□□ -0.34
LDLR-210ENST00000559340 EVC2Q86UK5 1308 aa12.91□□□□□ -0.34
LDLR-210ENST00000559340 MINK1Q8N4C8 1332 aaPredicted RBP12.91□□□□□ -0.34
LDLR-210ENST00000559340 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.91□□□□□ -0.34
LDLR-210ENST00000559340 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
LDLR-210ENST00000559340 PLEKHH1Q9ULM0 1364 aa12.91□□□□□ -0.34
LDLR-210ENST00000559340 DCCP43146 1447 aa12.9□□□□□ -0.34
LDLR-210ENST00000559340 TMF1P82094 1093 aa12.9□□□□□ -0.34
LDLR-210ENST00000559340 RBM33Q96EV2 1170 aaKnown RBP12.9□□□□□ -0.34
LDLR-210ENST00000559340 NALCNQ8IZF0 1738 aa12.9□□□□□ -0.34
LDLR-210ENST00000559340 WASLO00401 505 aaPredicted RBP12.89□□□□□ -0.35
LDLR-210ENST00000559340 PUS7Q96PZ0 661 aaKnown RBP12.89□□□□□ -0.35
LDLR-210ENST00000559340 ADGRB2O60241 1585 aa12.89□□□□□ -0.35
LDLR-210ENST00000559340 CDC42BPGQ6DT37 1551 aa12.88□□□□□ -0.35
LDLR-210ENST00000559340 SRPK2P78362 688 aaKnown RBP12.87□□□□□ -0.35
LDLR-210ENST00000559340 HIRIP3Q9BW71 556 aaPredicted RBP12.87□□□□□ -0.35
LDLR-210ENST00000559340 CDK19Q9BWU1 502 aa12.87□□□□□ -0.35
LDLR-210ENST00000559340 FMN2Q9NZ56 1722 aa12.87□□□□□ -0.35
LDLR-210ENST00000559340 TESK2Q96S53 571 aa12.86□□□□□ -0.35
LDLR-210ENST00000559340 ITSN1Q15811 1721 aa12.85□□□□□ -0.35
LDLR-210ENST00000559340 RGPD8O14715 1765 aaPredicted RBP12.85□□□□□ -0.35
LDLR-210ENST00000559340 SLAIN2Q9P270 581 aa12.84□□□□□ -0.35
LDLR-210ENST00000559340 ANKARQ7Z5J8 1434 aa12.84□□□□□ -0.35
LDLR-210ENST00000559340 ATAD2Q6PL18 1390 aa12.83□□□□□ -0.36
LDLR-210ENST00000559340 NUDT16Q96DE0 195 aaKnown RBP12.83□□□□□ -0.36
LDLR-210ENST00000559340 CCDC61Q9Y6R9 512 aa12.83□□□□□ -0.36
LDLR-210ENST00000559340 TULP4Q9NRJ4 1543 aa12.83□□□□□ -0.36
LDLR-210ENST00000559340 CABP2Q9NPB3 220 aa12.82□□□□□ -0.36
LDLR-210ENST00000559340 MST1RQ04912 1400 aa12.8□□□□□ -0.36
LDLR-210ENST00000559340 NUTM2FA1L443 756 aa12.8□□□□□ -0.36
LDLR-210ENST00000559340 ESCO1Q5FWF5 840 aa12.8□□□□□ -0.36
LDLR-210ENST00000559340 NINLQ9Y2I6 1382 aa12.8□□□□□ -0.36
LDLR-210ENST00000559340 C1orf167Q5SNV9 1468 aa12.79□□□□□ -0.36
LDLR-210ENST00000559340 POLR3GLQ9BT43 218 aa12.79□□□□□ -0.36
LDLR-210ENST00000559340 PHF8Q9UPP1 1060 aa12.79□□□□□ -0.36
LDLR-210ENST00000559340 KIF1AQ12756 1690 aa12.79□□□□□ -0.36
LDLR-210ENST00000559340 PLEKHG3A1L390 1219 aa12.78□□□□□ -0.36
LDLR-210ENST00000559340 NGDNQ8NEJ9 315 aaKnown RBP12.78□□□□□ -0.36
LDLR-210ENST00000559340 TMC1Q8TDI8 760 aa12.78□□□□□ -0.36
LDLR-210ENST00000559340 ZNF692Q9BU19 519 aaPredicted RBP12.78□□□□□ -0.36
LDLR-210ENST00000559340 HDGFL2Q7Z4V5 671 aaPredicted RBP12.77□□□□□ -0.37
LDLR-210ENST00000559340 TERF2IPQ9NYB0 399 aa12.77□□□□□ -0.37
LDLR-210ENST00000559340 RGS17Q9UGC6 210 aaPredicted RBP12.77□□□□□ -0.37
LDLR-210ENST00000559340 ATP7BP35670 1465 aa12.77□□□□□ -0.37
LDLR-210ENST00000559340 USP32Q8NFA0 1604 aa12.77□□□□□ -0.37
LDLR-210ENST00000559340 ZNF316A6NFI3 1004 aaPredicted RBP12.76□□□□□ -0.37
LDLR-210ENST00000559340 PSME1Q06323 249 aa12.76□□□□□ -0.37
LDLR-210ENST00000559340 CABP1Q9NZU7 370 aa12.76□□□□□ -0.37
LDLR-210ENST00000559340 PRR36Q9H6K5 1346 aa12.76□□□□□ -0.37
LDLR-210ENST00000559340 PPIP5K1Q6PFW1 1433 aa12.76□□□□□ -0.37
LDLR-210ENST00000559340 TOPAZ1Q8N9V7 1692 aa12.76□□□□□ -0.37
LDLR-210ENST00000559340 BRINP3Q76B58 766 aa12.75□□□□□ -0.37
LDLR-210ENST00000559340 NPHP3Q7Z494 1330 aa12.75□□□□□ -0.37
LDLR-210ENST00000559340 ORAI2Q96SN7 254 aa12.75□□□□□ -0.37
LDLR-210ENST00000559340 ROBO1Q9Y6N7 1651 aa12.74□□□□□ -0.37
LDLR-210ENST00000559340 BRD4O60885 1362 aaPredicted RBP12.74□□□□□ -0.37
LDLR-210ENST00000559340 CCDC7Q96M83 1385 aa12.74□□□□□ -0.37
LDLR-210ENST00000559340 PMFBP1Q8TBY8 1022 aa12.74□□□□□ -0.37
LDLR-210ENST00000559340 AKAP12Q02952 1782 aa12.74□□□□□ -0.37
LDLR-210ENST00000559340 ACEP12821 1306 aa12.73□□□□□ -0.37
LDLR-210ENST00000559340 KIF7Q2M1P5 1343 aa12.73□□□□□ -0.37
LDLR-210ENST00000559340 SLC12A5Q9H2X9 1139 aa12.73□□□□□ -0.37
LDLR-210ENST00000559340 C11orf95C9JLR9 678 aaPredicted RBP12.72□□□□□ -0.37
LDLR-210ENST00000559340 FOXO3O43524 673 aa12.72□□□□□ -0.37
LDLR-210ENST00000559340 POLR3AO14802 1390 aaPredicted RBP12.71□□□□□ -0.37
LDLR-210ENST00000559340 NHSL1Q5SYE7 1610 aa12.71□□□□□ -0.37
LDLR-210ENST00000559340 KRT28Q7Z3Y7 464 aa12.71□□□□□ -0.37
LDLR-210ENST00000559340 JCADQ9P266 1359 aa12.7□□□□□ -0.38
LDLR-210ENST00000559340 WASHC2AQ641Q2 1341 aa12.7□□□□□ -0.38
LDLR-210ENST00000559340 PHLPP1O60346 1717 aa12.7□□□□□ -0.38
LDLR-210ENST00000559340 AHDC1Q5TGY3 1603 aaPredicted RBP12.7□□□□□ -0.38
LDLR-210ENST00000559340 KTN1Q86UP2 1357 aaKnown RBP12.69□□□□□ -0.38
LDLR-210ENST00000559340 ANKRD36BQ8N2N9 1353 aa12.69□□□□□ -0.38
LDLR-210ENST00000559340 POTEAQ6S8J7 498 aa12.69□□□□□ -0.38
LDLR-210ENST00000559340 LRRC59Q96AG4 307 aaKnown RBP12.69□□□□□ -0.38
LDLR-210ENST00000559340 MYOM1P52179 1685 aa12.69□□□□□ -0.38
LDLR-210ENST00000559340 MON2Q7Z3U7 1717 aa12.68□□□□□ -0.38
LDLR-210ENST00000559340 SOS2Q07890 1332 aaPredicted RBP12.68□□□□□ -0.38
LDLR-210ENST00000559340 PANK3Q9H999 370 aa12.68□□□□□ -0.38
LDLR-210ENST00000559340 CPSF1Q10570 1443 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms