RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 FOXC1Q12948 553 aa12.14□□□□□ -0.47
VPS13C-208ENST00000559119 USB1Q9BQ65 265 aaKnown RBP12.14□□□□□ -0.47
VPS13C-208ENST00000559119 HOXA2O43364 376 aa12.13□□□□□ -0.47
VPS13C-208ENST00000559119 BARGINQ6ZT62 677 aa12.13□□□□□ -0.47
VPS13C-208ENST00000559119 NUTM1Q86Y26 1132 aa12.13□□□□□ -0.47
VPS13C-208ENST00000559119 HLA-CQ95604 372 aa12.13□□□□□ -0.47
VPS13C-208ENST00000559119 FAM187AA6NFU0 413 aa12.12□□□□□ -0.47
VPS13C-208ENST00000559119 ZMYND10O75800 440 aa12.12□□□□□ -0.47
VPS13C-208ENST00000559119 ZC3H15Q8WU90 426 aaKnown RBP12.11□□□□□ -0.47
VPS13C-208ENST00000559119 MMP16P51512 607 aa12.1□□□□□ -0.47
VPS13C-208ENST00000559119 PKD2L1Q9P0L9 805 aa12.1□□□□□ -0.47
VPS13C-208ENST00000559119 GUCA2AQ02747 115 aa12.09□□□□□ -0.47
VPS13C-208ENST00000559119 TTLL12Q14166 644 aaPredicted RBP12.09□□□□□ -0.47
VPS13C-208ENST00000559119 SSTR3P32745 418 aaPredicted RBP12.08□□□□□ -0.48
VPS13C-208ENST00000559119 MYT1Q01538 1121 aa12.08□□□□□ -0.48
VPS13C-208ENST00000559119 ZNF787Q6DD87 383 aa12.08□□□□□ -0.48
VPS13C-208ENST00000559119 REPIN1Q9BWE0 567 aaKnown RBP12.08□□□□□ -0.48
VPS13C-208ENST00000559119 DXOO77932 396 aaKnown RBP12.06□□□□□ -0.48
VPS13C-208ENST00000559119 CCDC24Q8N4L8 307 aa12.05□□□□□ -0.48
VPS13C-208ENST00000559119 AMHR2Q16671 573 aa12.04□□□□□ -0.48
VPS13C-208ENST00000559119 CYP4X1Q8N118 509 aa12.04□□□□□ -0.48
VPS13C-208ENST00000559119 FDX1P10109 184 aa12.03□□□□□ -0.48
VPS13C-208ENST00000559119 TRIM32Q13049 653 aa12.02□□□□□ -0.49
VPS13C-208ENST00000559119 SYMPKQ92797 1274 aaKnown RBP12.02□□□□□ -0.49
VPS13C-208ENST00000559119 GIGYF2Q6Y7W6 1299 aaKnown RBP12.01□□□□□ -0.49
VPS13C-208ENST00000559119 JUNDP17535 347 aa12□□□□□ -0.49
VPS13C-208ENST00000559119 RETREG3Q86VR2 466 aa12□□□□□ -0.49
VPS13C-208ENST00000559119 SPIRE2Q8WWL2 714 aa12□□□□□ -0.49
VPS13C-208ENST00000559119 TOR4AQ9NXH8 423 aa12□□□□□ -0.49
VPS13C-208ENST00000559119 C6orf229H3BNL8 230 aa11.99□□□□□ -0.49
VPS13C-208ENST00000559119 TTC24A2A3L6 582 aaPredicted RBP11.98□□□□□ -0.49
VPS13C-208ENST00000559119 WNT7AO00755 349 aa11.97□□□□□ -0.49
VPS13C-208ENST00000559119 PCDHGC3Q9UN70 934 aa11.97□□□□□ -0.49
VPS13C-208ENST00000559119 BEGAINQ9BUH8 593 aa11.96□□□□□ -0.49
VPS13C-208ENST00000559119 MOXD2PA6NHM9 499 aa11.95□□□□□ -0.5
VPS13C-208ENST00000559119 ST8SIA5O15466 376 aa11.95□□□□□ -0.5
VPS13C-208ENST00000559119 NDUFV2P19404 249 aa11.95□□□□□ -0.5
VPS13C-208ENST00000559119 AK7Q96M32 723 aa11.95□□□□□ -0.5
VPS13C-208ENST00000559119 AAASQ9NRG9 546 aa11.95□□□□□ -0.5
VPS13C-208ENST00000559119 TRIM66O15016 1216 aa11.94□□□□□ -0.5
VPS13C-208ENST00000559119 NUDT12Q9BQG2 462 aa11.94□□□□□ -0.5
VPS13C-208ENST00000559119 PARP9Q8IXQ6 854 aa11.93□□□□□ -0.5
VPS13C-208ENST00000559119 SNIP1Q8TAD8 396 aaKnown RBP11.93□□□□□ -0.5
VPS13C-208ENST00000559119 MRGPRX2Q96LB1 330 aa11.93□□□□□ -0.5
VPS13C-208ENST00000559119 AVPP01185 164 aa11.92□□□□□ -0.5
VPS13C-208ENST00000559119 DIXDC1Q155Q3 683 aa11.92□□□□□ -0.5
VPS13C-208ENST00000559119 MS4A1P11836 297 aa11.91□□□□□ -0.5
VPS13C-208ENST00000559119 AXIN1O15169 862 aa11.9□□□□□ -0.5
VPS13C-208ENST00000559119 WNT7BP56706 349 aa11.9□□□□□ -0.5
VPS13C-208ENST00000559119 CTC1Q2NKJ3 1217 aa11.9□□□□□ -0.5
VPS13C-208ENST00000559119 RC3H1Q5TC82 1133 aaKnown RBP11.9□□□□□ -0.5
VPS13C-208ENST00000559119 CRIPAKQ8N1N5 446 aa11.9□□□□□ -0.5
VPS13C-208ENST00000559119 TBC1D2Q9BYX2 928 aa11.9□□□□□ -0.5
VPS13C-208ENST00000559119 MTMR2Q13614 643 aa11.89□□□□□ -0.51
VPS13C-208ENST00000559119 SPDYE5A6NIY4 337 aa11.88□□□□□ -0.51
VPS13C-208ENST00000559119 POTECB2RU33 542 aa11.88□□□□□ -0.51
VPS13C-208ENST00000559119 CCNYL3P0C7X3 344 aa11.88□□□□□ -0.51
VPS13C-208ENST00000559119 SMPD1P17405 629 aa11.87□□□□□ -0.51
VPS13C-208ENST00000559119 SKOR1P84550 965 aa11.87□□□□□ -0.51
VPS13C-208ENST00000559119 PRR7Q8TB68 274 aa11.87□□□□□ -0.51
VPS13C-208ENST00000559119 ZNF775Q96BV0 537 aaPredicted RBP11.87□□□□□ -0.51
VPS13C-208ENST00000559119 GJA5P36382 358 aa11.86□□□□□ -0.51
VPS13C-208ENST00000559119 PTPRNQ16849 979 aa11.86□□□□□ -0.51
VPS13C-208ENST00000559119 PTCRAQ6ISU1 281 aaPredicted RBP11.86□□□□□ -0.51
VPS13C-208ENST00000559119 J3QL48 77 aa11.85□□□□□ -0.51
VPS13C-208ENST00000559119 SMCPP49901 116 aaPredicted RBP11.84□□□□□ -0.51
VPS13C-208ENST00000559119 RSBN1LQ6PCB5 846 aaPredicted RBP11.84□□□□□ -0.51
VPS13C-208ENST00000559119 PDE4DQ08499 809 aa11.83□□□□□ -0.52
VPS13C-208ENST00000559119 EVA1BQ9NVM1 165 aa11.83□□□□□ -0.52
VPS13C-208ENST00000559119 DACH1Q9UI36 760 aa11.83□□□□□ -0.52
VPS13C-208ENST00000559119 DESI1Q6ICB0 168 aa11.82□□□□□ -0.52
VPS13C-208ENST00000559119 EHBP1Q8NDI1 1231 aa11.82□□□□□ -0.52
VPS13C-208ENST00000559119 SLC24A3Q9HC58 644 aa11.82□□□□□ -0.52
VPS13C-208ENST00000559119 SPTLC1O15269 473 aa11.81□□□□□ -0.52
VPS13C-208ENST00000559119 UNC93B1Q9H1C4 597 aa11.81□□□□□ -0.52
VPS13C-208ENST00000559119 KCNH2Q12809 1159 aa11.8□□□□□ -0.52
VPS13C-208ENST00000559119 RIC3Q7Z5B4 369 aa11.8□□□□□ -0.52
VPS13C-208ENST00000559119 ZBTB3Q9H5J0 574 aa11.8□□□□□ -0.52
VPS13C-208ENST00000559119 PCDHB15Q9Y5E8 787 aa11.8□□□□□ -0.52
VPS13C-208ENST00000559119 ALDH1A1P00352 501 aa11.79□□□□□ -0.52
VPS13C-208ENST00000559119 SH3BP2P78314 561 aa11.78□□□□□ -0.52
VPS13C-208ENST00000559119 HPS1Q92902 700 aa11.78□□□□□ -0.52
VPS13C-208ENST00000559119 GMPR2Q9P2T1 348 aaKnown RBP11.78□□□□□ -0.52
VPS13C-208ENST00000559119 C11orf95C9JLR9 678 aaPredicted RBP11.77□□□□□ -0.53
VPS13C-208ENST00000559119 HRCP23327 699 aa11.77□□□□□ -0.53
VPS13C-208ENST00000559119 CSPP1Q1MSJ5 1256 aa11.77□□□□□ -0.53
VPS13C-208ENST00000559119 CTHP32929 405 aa11.76□□□□□ -0.53
VPS13C-208ENST00000559119 LINC01559Q495D7 138 aa11.76□□□□□ -0.53
VPS13C-208ENST00000559119 PRPF38BQ5VTL8 546 aaKnown RBP11.76□□□□□ -0.53
VPS13C-208ENST00000559119 BAP1Q92560 729 aa11.76□□□□□ -0.53
VPS13C-208ENST00000559119 CFAP99D6REC4 459 aa11.75□□□□□ -0.53
VPS13C-208ENST00000559119 LYPD8Q6UX82 237 aa11.75□□□□□ -0.53
VPS13C-208ENST00000559119 WASF2Q9Y6W5 498 aa11.75□□□□□ -0.53
VPS13C-208ENST00000559119 SIAH2O43255 324 aa11.74□□□□□ -0.53
VPS13C-208ENST00000559119 MYSM1Q5VVJ2 828 aa11.73□□□□□ -0.53
VPS13C-208ENST00000559119 CABLES1Q8TDN4 633 aa11.73□□□□□ -0.53
VPS13C-208ENST00000559119 ATP13A2Q9NQ11 1180 aa11.73□□□□□ -0.53
VPS13C-208ENST00000559119 NUTM2BA6NNL0 878 aaPredicted RBP11.72□□□□□ -0.53
VPS13C-208ENST00000559119 NUTM2EB1AL46 878 aaPredicted RBP11.72□□□□□ -0.53
VPS13C-208ENST00000559119 NUTM2DQ5VT03 806 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms