RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 SETBP1Q9Y6X0 1596 aa17.61■□□□□ 0.41
TPM1-216ENST00000558910 PRKAR2AP13861 404 aaKnown RBP17.6■□□□□ 0.41
TPM1-216ENST00000558910 SLAIN2Q9P270 581 aa17.6■□□□□ 0.41
TPM1-216ENST00000558910 PIK3R4Q99570 1358 aa17.6■□□□□ 0.41
TPM1-216ENST00000558910 ACIN1Q9UKV3 1341 aaKnown RBP17.59■□□□□ 0.41
TPM1-216ENST00000558910 TMEM132EQ6IEE7 984 aa17.59■□□□□ 0.41
TPM1-216ENST00000558910 SPATA31E1Q6ZUB1 1445 aa17.58■□□□□ 0.41
TPM1-216ENST00000558910 C19orf44Q9H6X5 657 aa17.57■□□□□ 0.4
TPM1-216ENST00000558910 PPLO60437 1756 aa17.56■□□□□ 0.4
TPM1-216ENST00000558910 ANKRD30BQ9BXX2 1392 aa17.55■□□□□ 0.4
TPM1-216ENST00000558910 CHADLQ6NUI6 762 aa17.54■□□□□ 0.4
TPM1-216ENST00000558910 CADPS2Q86UW7 1296 aa17.54■□□□□ 0.4
TPM1-216ENST00000558910 ROBO1Q9Y6N7 1651 aa17.53■□□□□ 0.4
TPM1-216ENST00000558910 CFAP70Q5T0N1 1121 aa17.53■□□□□ 0.4
TPM1-216ENST00000558910 DCAF11Q8TEB1 546 aa17.53■□□□□ 0.4
TPM1-216ENST00000558910 ROBO2Q9HCK4 1378 aa17.53■□□□□ 0.4
TPM1-216ENST00000558910 HRCP23327 699 aa17.52■□□□□ 0.4
TPM1-216ENST00000558910 WAPLQ7Z5K2 1190 aa17.52■□□□□ 0.4
TPM1-216ENST00000558910 FAM135BQ49AJ0 1406 aa17.52■□□□□ 0.4
TPM1-216ENST00000558910 XRN1Q8IZH2 1706 aaKnown RBP17.52■□□□□ 0.39
TPM1-216ENST00000558910 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.52■□□□□ 0.39
TPM1-216ENST00000558910 NUTM2FA1L443 756 aa17.51■□□□□ 0.39
TPM1-216ENST00000558910 PROM2Q8N271 834 aa17.51■□□□□ 0.39
TPM1-216ENST00000558910 SAFB2Q14151 953 aaKnown RBP eCLIP17.5■□□□□ 0.39
TPM1-216ENST00000558910 FKBP8Q14318 412 aa17.49■□□□□ 0.39
TPM1-216ENST00000558910 DDX17Q92841 729 aaKnown RBP17.49■□□□□ 0.39
TPM1-216ENST00000558910 NCOA3Q9Y6Q9 1424 aa17.48■□□□□ 0.39
TPM1-216ENST00000558910 SETD1AO15047 1707 aaKnown RBP17.47■□□□□ 0.39
TPM1-216ENST00000558910 BRINP3Q76B58 766 aa17.47■□□□□ 0.39
TPM1-216ENST00000558910 NEUROD1Q13562 356 aa17.46■□□□□ 0.39
TPM1-216ENST00000558910 IFT172Q9UG01 1749 aa17.46■□□□□ 0.39
TPM1-216ENST00000558910 PIK3C2GO75747 1445 aa17.46■□□□□ 0.39
TPM1-216ENST00000558910 ADGRL3Q9HAR2 1447 aa17.46■□□□□ 0.39
TPM1-216ENST00000558910 PLEKHH1Q9ULM0 1364 aa17.45■□□□□ 0.38
TPM1-216ENST00000558910 SIN3AQ96ST3 1273 aa17.45■□□□□ 0.38
TPM1-216ENST00000558910 MED1Q15648 1581 aaPredicted RBP17.45■□□□□ 0.38
TPM1-216ENST00000558910 C14orf93Q9H972 538 aaKnown RBP17.44■□□□□ 0.38
TPM1-216ENST00000558910 PHLPP1O60346 1717 aa17.44■□□□□ 0.38
TPM1-216ENST00000558910 LRPPRCP42704 1394 aaKnown RBP17.43■□□□□ 0.38
TPM1-216ENST00000558910 ASXL1Q8IXJ9 1541 aa17.43■□□□□ 0.38
TPM1-216ENST00000558910 ORAI2Q96SN7 254 aa17.43■□□□□ 0.38
TPM1-216ENST00000558910 TRAK1Q9UPV9 953 aa17.43■□□□□ 0.38
TPM1-216ENST00000558910 PTCH1Q13635 1447 aa17.43■□□□□ 0.38
TPM1-216ENST00000558910 NALCNQ8IZF0 1738 aa17.43■□□□□ 0.38
TPM1-216ENST00000558910 MST1RQ04912 1400 aa17.42■□□□□ 0.38
TPM1-216ENST00000558910 YTHDC2Q9H6S0 1430 aaKnown RBP17.42■□□□□ 0.38
TPM1-216ENST00000558910 TRIM26Q12899 539 aaPredicted RBP17.42■□□□□ 0.38
TPM1-216ENST00000558910 NUTM2BA6NNL0 878 aaPredicted RBP17.41■□□□□ 0.38
TPM1-216ENST00000558910 NUTM2EB1AL46 878 aaPredicted RBP17.41■□□□□ 0.38
TPM1-216ENST00000558910 NUTM2AQ8IVF1 878 aaPredicted RBP17.41■□□□□ 0.38
TPM1-216ENST00000558910 POGKQ9P215 609 aa17.41■□□□□ 0.38
TPM1-216ENST00000558910 DHX57Q6P158 1386 aaKnown RBP17.4■□□□□ 0.38
TPM1-216ENST00000558910 MYOM2P54296 1465 aa17.4■□□□□ 0.38
TPM1-216ENST00000558910 ESCO1Q5FWF5 840 aa17.4■□□□□ 0.38
TPM1-216ENST00000558910 PRAM1Q96QH2 718 aa17.4■□□□□ 0.38
TPM1-216ENST00000558910 HAX1O00165 279 aa17.39■□□□□ 0.37
TPM1-216ENST00000558910 DCCP43146 1447 aa17.38■□□□□ 0.37
TPM1-216ENST00000558910 XPCQ01831 940 aaPredicted RBP17.38■□□□□ 0.37
TPM1-216ENST00000558910 HIRIP3Q9BW71 556 aaPredicted RBP17.38■□□□□ 0.37
TPM1-216ENST00000558910 C1orf167Q5SNV9 1468 aa17.37■□□□□ 0.37
TPM1-216ENST00000558910 MEX3CQ5U5Q3 659 aaKnown RBP17.37■□□□□ 0.37
TPM1-216ENST00000558910 ABCC11Q96J66 1382 aa17.37■□□□□ 0.37
TPM1-216ENST00000558910 NRXN1Q9ULB1 1477 aa17.37■□□□□ 0.37
TPM1-216ENST00000558910 PLEKHG5O94827 1062 aa17.36■□□□□ 0.37
TPM1-216ENST00000558910 JCADQ9P266 1359 aa17.36■□□□□ 0.37
TPM1-216ENST00000558910 MINK1Q8N4C8 1332 aaPredicted RBP17.35■□□□□ 0.37
TPM1-216ENST00000558910 COL16A1Q07092 1604 aaPredicted RBP17.33■□□□□ 0.37
TPM1-216ENST00000558910 L3MBTL2Q969R5 705 aa17.33■□□□□ 0.36
TPM1-216ENST00000558910 TECPR2O15040 1411 aa17.32■□□□□ 0.36
TPM1-216ENST00000558910 FOXO3O43524 673 aa17.32■□□□□ 0.36
TPM1-216ENST00000558910 CREBZFQ9NS37 354 aa17.32■□□□□ 0.36
TPM1-216ENST00000558910 NBPF1Q3BBV0 1214 aa17.31■□□□□ 0.36
TPM1-216ENST00000558910 AHDC1Q5TGY3 1603 aaPredicted RBP17.31■□□□□ 0.36
TPM1-216ENST00000558910 LRRC59Q96AG4 307 aaKnown RBP17.3■□□□□ 0.36
TPM1-216ENST00000558910 LAMC1P11047 1609 aa17.29■□□□□ 0.36
TPM1-216ENST00000558910 RGS17Q9UGC6 210 aaPredicted RBP17.29■□□□□ 0.36
TPM1-216ENST00000558910 KNDC1Q76NI1 1749 aa17.29■□□□□ 0.36
TPM1-216ENST00000558910 PRAG1Q86YV5 1406 aa17.29■□□□□ 0.36
TPM1-216ENST00000558910 ADAMTS2O95450 1211 aa17.28■□□□□ 0.36
TPM1-216ENST00000558910 PMFBP1Q8TBY8 1022 aa17.28■□□□□ 0.36
TPM1-216ENST00000558910 ADGRB1O14514 1584 aa17.28■□□□□ 0.36
TPM1-216ENST00000558910 CDC42BPGQ6DT37 1551 aa17.27■□□□□ 0.35
TPM1-216ENST00000558910 LRP6O75581 1613 aa17.26■□□□□ 0.35
TPM1-216ENST00000558910 EVX2Q03828 476 aa17.26■□□□□ 0.35
TPM1-216ENST00000558910 POTEAQ6S8J7 498 aa17.26■□□□□ 0.35
TPM1-216ENST00000558910 SIRT1Q96EB6 747 aa17.26■□□□□ 0.35
TPM1-216ENST00000558910 PCGF6Q9BYE7 350 aa17.26■□□□□ 0.35
TPM1-216ENST00000558910 FARP1Q9Y4F1 1045 aaPredicted RBP17.26■□□□□ 0.35
TPM1-216ENST00000558910 LMOD2Q6P5Q4 547 aa17.25■□□□□ 0.35
TPM1-216ENST00000558910 STAC3Q96MF2 364 aa17.25■□□□□ 0.35
TPM1-216ENST00000558910 NHSL1Q5SYE7 1610 aa17.25■□□□□ 0.35
TPM1-216ENST00000558910 SPATA31A6Q5VVP1 1343 aa17.24■□□□□ 0.35
TPM1-216ENST00000558910 C8orf37Q96NL8 207 aa17.24■□□□□ 0.35
TPM1-216ENST00000558910 NPHP3Q7Z494 1330 aa17.23■□□□□ 0.35
TPM1-216ENST00000558910 PHF8Q9UPP1 1060 aa17.23■□□□□ 0.35
TPM1-216ENST00000558910 PNPLA6Q8IY17 1366 aa17.23■□□□□ 0.35
TPM1-216ENST00000558910 KRT28Q7Z3Y7 464 aa17.22■□□□□ 0.35
TPM1-216ENST00000558910 SOS2Q07890 1332 aaPredicted RBP17.21■□□□□ 0.35
TPM1-216ENST00000558910 DLC1Q96QB1 1528 aa17.21■□□□□ 0.35
TPM1-216ENST00000558910 SP7Q8TDD2 431 aaPredicted RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms