RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	RNF214	Q8ND24	703 aa		11.64	□□□□□ -0.55
TRPM1-208	ENST00000558768	DDX11	Q96FC9	970 aa		11.64	□□□□□ -0.55
TRPM1-208	ENST00000558768	ADAMTS8	Q9UP79	889 aa		11.64	□□□□□ -0.55
TRPM1-208	ENST00000558768	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.64	□□□□□ -0.55
TRPM1-208	ENST00000558768	CCDC146	Q8IYE0	955 aa		11.64	□□□□□ -0.55
TRPM1-208	ENST00000558768	CENPH	Q9H3R5	247 aa		11.64	□□□□□ -0.55
TRPM1-208	ENST00000558768	RBM25	P49756	843 aa	Known RBP	11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	RASSF8	Q8NHQ8	419 aa		11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	NCAPD3	P42695	1498 aa		11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	RPRD2	Q5VT52	1461 aa	Known RBP	11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	PCF11	O94913	1555 aa	Known RBP	11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768		H3BQV1	296 aa		11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	IFFO2	Q5TF58	517 aa		11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	MCTP1	Q6DN14	999 aa		11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	TDO2	P48775	406 aa		11.63	□□□□□ -0.55
TRPM1-208	ENST00000558768	TTLL5	Q6EMB2	1281 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	TBC1D2	Q9BYX2	928 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	DHX29	Q7Z478	1369 aa	Known RBP	11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	APAF1	O14727	1248 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	TNNT1	P13805	278 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	PANK2	Q9BZ23	570 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	NINL	Q9Y2I6	1382 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	PLCD3	Q8N3E9	789 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	BICD2	Q8TD16	824 aa		11.62	□□□□□ -0.55
TRPM1-208	ENST00000558768	CFTR	P13569	1480 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	TRIM6-TRIM34	B2RNG4	842 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	NPHP1	O15259	732 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	TRIM5	Q9C035	493 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	PEG3	Q9GZU2	1588 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	SKIDA1	Q1XH10	827 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	LRPPRC	P42704	1394 aa	Known RBP	11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	REC8	O95072	547 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	FAM184A	Q8NB25	1140 aa		11.61	□□□□□ -0.55
TRPM1-208	ENST00000558768	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	GTPBP4	Q9BZE4	634 aa	Known RBP	11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	MYO6	Q9UM54	1294 aa		11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	DYNC1I1	O14576	645 aa		11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	BIVM-ERCC5	R4GMW8	1640 aa		11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	NAT10	Q9H0A0	1025 aa	Known RBP	11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	MNAT1	P51948	309 aa		11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	NBPF1	Q3BBV0	1214 aa		11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	TRERF1	Q96PN7	1200 aa		11.6	□□□□□ -0.55
TRPM1-208	ENST00000558768	EHBP1L1	Q8N3D4	1523 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	TSPY26P	Q9H489	355 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	HOOK1	Q9UJC3	728 aa	Known RBP	11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	PDZRN3	Q9UPQ7	1066 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	PTPRK	Q15262	1439 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	TMCO3	Q6UWJ1	677 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	ZNF526	Q8TF50	670 aa	Predicted RBP	11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	PRM3	Q9NNZ6	103 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	DNAAF4	Q8WXU2	420 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	PANK1	Q8TE04	598 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	GPATCH3	Q96I76	525 aa		11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	RBM28	Q9NW13	759 aa	Known RBP	11.59	□□□□□ -0.55
TRPM1-208	ENST00000558768	KDM2B	Q8NHM5	1336 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	SHTN1	A0MZ66	631 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	PLEKHD1	A6NEE1	506 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	LMOD3	Q0VAK6	560 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	UBXN4	Q92575	508 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	GORAB	Q5T7V8	394 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	TBC1D32	Q96NH3	1257 aa		11.58	□□□□□ -0.56
TRPM1-208	ENST00000558768	CCDC73	Q6ZRK6	1079 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	HDAC5	Q9UQL6	1122 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	KIAA1107	Q9UPP5	1409 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	TMCO5B	A8MYB1	307 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	KIF2A	O00139	706 aa	Predicted RBP	11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	SLFN5	Q08AF3	891 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	STK31	Q9BXU1	1019 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	TICAM2	Q86XR7	235 aa		11.57	□□□□□ -0.56
TRPM1-208	ENST00000558768	ZKSCAN2	Q63HK3	967 aa		11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	GBP3	Q9H0R5	595 aa		11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	BCAR3	O75815	825 aa		11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	DUSP27	Q5VZP5	1158 aa		11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	ESF1	Q9H501	851 aa	Known RBP	11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	SMC4	Q9NTJ3	1288 aa		11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	CCDC9	Q9Y3X0	531 aa	Known RBP	11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	ROCK1	Q13464	1354 aa		11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	SUPT6H	Q7KZ85	1726 aa	Known RBP	11.56	□□□□□ -0.56
TRPM1-208	ENST00000558768	KIAA1328	Q86T90	577 aa		11.55	□□□□□ -0.56
TRPM1-208	ENST00000558768	GTF2F1	P35269	517 aa	Known RBP eCLIP	11.55	□□□□□ -0.56
TRPM1-208	ENST00000558768	KIF20A	O95235	890 aa		11.55	□□□□□ -0.56
TRPM1-208	ENST00000558768	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.55	□□□□□ -0.56
TRPM1-208	ENST00000558768	OFD1	O75665	1012 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	TERF1	P54274	439 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	CHMP3	Q9Y3E7	222 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	NF2	P35240	595 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	SARNP	P82979	210 aa	Known RBP	11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	MICALCL	Q6ZW33	695 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	CLASRP	Q8N2M8	674 aa	Known RBP	11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	CCDC102A	Q96A19	550 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	CADPS	Q9ULU8	1353 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	PPP2R1A	P30153	589 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	LRRCC1	Q9C099	1032 aa		11.54	□□□□□ -0.56
TRPM1-208	ENST00000558768	MORC1	Q86VD1	984 aa		11.53	□□□□□ -0.56
TRPM1-208	ENST00000558768	SETSIP	P0DME0	302 aa		11.53	□□□□□ -0.56
TRPM1-208	ENST00000558768	MCM5	P33992	734 aa		11.53	□□□□□ -0.56
TRPM1-208	ENST00000558768	CPLX2	Q6PUV4	134 aa	Known RBP	11.53	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms