RNA–Protein interactions for RNA: ENST00000558575.1

LINC01220-201, Transcript of long intergenic non-protein coding RNA 1220, humanhuman

TSL 1 (best) BASIC

Gene LINC01220, Length 715 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01220-201ENST00000558575 USP21Q9UK80 565 aa22.81■■□□□ 1.24
LINC01220-201ENST00000558575 CLTCL1P53675 1640 aa22.8■■□□□ 1.24
LINC01220-201ENST00000558575 TRPC5Q9UL62 973 aaPredicted RBP22.8■■□□□ 1.24
LINC01220-201ENST00000558575 PTCH1Q13635 1447 aa22.77■■□□□ 1.24
LINC01220-201ENST00000558575 FNBP4Q8N3X1 1017 aaPredicted RBP22.76■■□□□ 1.23
LINC01220-201ENST00000558575 C1orf167Q5SNV9 1468 aa22.76■■□□□ 1.23
LINC01220-201ENST00000558575 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.76■■□□□ 1.23
LINC01220-201ENST00000558575 METP08581 1390 aa22.76■■□□□ 1.23
LINC01220-201ENST00000558575 CCDC144AA2RUR9 1427 aa22.74■■□□□ 1.23
LINC01220-201ENST00000558575 CCDC125Q86Z20 511 aa22.74■■□□□ 1.23
LINC01220-201ENST00000558575 DHX57Q6P158 1386 aaKnown RBP22.74■■□□□ 1.23
LINC01220-201ENST00000558575 BCL9LQ86UU0 1499 aa22.73■■□□□ 1.23
LINC01220-201ENST00000558575 SOS2Q07890 1332 aaPredicted RBP22.72■■□□□ 1.23
LINC01220-201ENST00000558575 ZNF326Q5BKZ1 582 aaKnown RBP22.71■■□□□ 1.23
LINC01220-201ENST00000558575 SPATA31E1Q6ZUB1 1445 aa22.71■■□□□ 1.23
LINC01220-201ENST00000558575 GLI3P10071 1580 aa22.71■■□□□ 1.23
LINC01220-201ENST00000558575 MYOM2P54296 1465 aa22.7■■□□□ 1.22
LINC01220-201ENST00000558575 RGL3Q3MIN7 710 aa22.68■■□□□ 1.22
LINC01220-201ENST00000558575 BLMP54132 1417 aaPredicted RBP22.67■■□□□ 1.22
LINC01220-201ENST00000558575 ORAI2Q96SN7 254 aa22.67■■□□□ 1.22
LINC01220-201ENST00000558575 RPGRIP1LQ68CZ1 1315 aa22.64■■□□□ 1.22
LINC01220-201ENST00000558575 NEXMIFQ5QGS0 1516 aa22.64■■□□□ 1.21
LINC01220-201ENST00000558575 DEFB132Q7Z7B7 95 aa22.64■■□□□ 1.21
LINC01220-201ENST00000558575 KIF1BO60333 1816 aa22.64■■□□□ 1.21
LINC01220-201ENST00000558575 SIN3AQ96ST3 1273 aa22.63■■□□□ 1.21
LINC01220-201ENST00000558575 GJD4Q96KN9 370 aaPredicted RBP22.61■■□□□ 1.21
LINC01220-201ENST00000558575 RALGAPBQ86X10 1494 aa22.6■■□□□ 1.21
LINC01220-201ENST00000558575 PXDNQ92626 1479 aa22.6■■□□□ 1.21
LINC01220-201ENST00000558575 VGFO15240 615 aaPredicted RBP22.58■■□□□ 1.21
LINC01220-201ENST00000558575 ADGRF5Q8IZF2 1346 aa22.57■■□□□ 1.2
LINC01220-201ENST00000558575 ROBO2Q9HCK4 1378 aa22.56■■□□□ 1.2
LINC01220-201ENST00000558575 SLIT2O94813 1529 aa22.55■■□□□ 1.2
LINC01220-201ENST00000558575 PLCH1Q4KWH8 1693 aa22.54■■□□□ 1.2
LINC01220-201ENST00000558575 NEUROD1Q13562 356 aa22.53■■□□□ 1.2
LINC01220-201ENST00000558575 CDC42BPGQ6DT37 1551 aa22.53■■□□□ 1.2
LINC01220-201ENST00000558575 USP32Q8NFA0 1604 aa22.53■■□□□ 1.2
LINC01220-201ENST00000558575 PRAG1Q86YV5 1406 aa22.51■■□□□ 1.19
LINC01220-201ENST00000558575 PSDA5PKW4 1024 aaPredicted RBP22.51■■□□□ 1.19
LINC01220-201ENST00000558575 DCAF11Q8TEB1 546 aa22.5■■□□□ 1.19
LINC01220-201ENST00000558575 PPLO60437 1756 aa22.5■■□□□ 1.19
LINC01220-201ENST00000558575 NWD2Q9ULI1 1742 aa22.49■■□□□ 1.19
LINC01220-201ENST00000558575 KDM2AQ9Y2K7 1162 aa22.49■■□□□ 1.19
LINC01220-201ENST00000558575 ABCA3Q99758 1704 aa22.48■■□□□ 1.19
LINC01220-201ENST00000558575 XPCQ01831 940 aaPredicted RBP22.48■■□□□ 1.19
LINC01220-201ENST00000558575 UNC5CLQ8IV45 518 aa22.48■■□□□ 1.19
LINC01220-201ENST00000558575 NPHP3Q7Z494 1330 aa22.48■■□□□ 1.19
LINC01220-201ENST00000558575 L3MBTL2Q969R5 705 aa22.47■■□□□ 1.19
LINC01220-201ENST00000558575 RGPD1P0DJD0 1748 aa22.46■■□□□ 1.19
LINC01220-201ENST00000558575 IFT172Q9UG01 1749 aa22.46■■□□□ 1.19
LINC01220-201ENST00000558575 SF3B2Q13435 895 aaKnown RBP22.46■■□□□ 1.19
LINC01220-201ENST00000558575 NRXN1Q9ULB1 1477 aa22.45■■□□□ 1.18
LINC01220-201ENST00000558575 SEPT12Q8IYM1 358 aa22.44■■□□□ 1.18
LINC01220-201ENST00000558575 RGPD8O14715 1765 aaPredicted RBP22.43■■□□□ 1.18
LINC01220-201ENST00000558575 PIK3C2GO75747 1445 aa22.43■■□□□ 1.18
LINC01220-201ENST00000558575 FOXO3O43524 673 aa22.43■■□□□ 1.18
LINC01220-201ENST00000558575 ESCO1Q5FWF5 840 aa22.43■■□□□ 1.18
LINC01220-201ENST00000558575 STAC3Q96MF2 364 aa22.43■■□□□ 1.18
LINC01220-201ENST00000558575 C14orf93Q9H972 538 aaKnown RBP22.43■■□□□ 1.18
LINC01220-201ENST00000558575 TNS1Q9HBL0 1735 aaKnown RBP22.43■■□□□ 1.18
LINC01220-201ENST00000558575 FMN2Q9NZ56 1722 aa22.41■■□□□ 1.18
LINC01220-201ENST00000558575 CFAP70Q5T0N1 1121 aa22.41■■□□□ 1.18
LINC01220-201ENST00000558575 KIF1AQ12756 1690 aa22.41■■□□□ 1.18
LINC01220-201ENST00000558575 NRAPQ86VF7 1730 aa22.4■■□□□ 1.18
LINC01220-201ENST00000558575 TMEM132EQ6IEE7 984 aa22.38■■□□□ 1.17
LINC01220-201ENST00000558575 CCER1Q8TC90 406 aaPredicted RBP22.38■■□□□ 1.17
LINC01220-201ENST00000558575 CLSPNQ9HAW4 1339 aa22.37■■□□□ 1.17
LINC01220-201ENST00000558575 ONECUT3O60422 494 aaPredicted RBP22.36■■□□□ 1.17
LINC01220-201ENST00000558575 KRT27Q7Z3Y8 459 aa22.36■■□□□ 1.17
LINC01220-201ENST00000558575 SPATA31A3Q5VYP0 1347 aa22.35■■□□□ 1.17
LINC01220-201ENST00000558575 VPS72Q15906 364 aa22.35■■□□□ 1.17
LINC01220-201ENST00000558575 BAG6P46379 1132 aa22.34■■□□□ 1.17
LINC01220-201ENST00000558575 LRPPRCP42704 1394 aaKnown RBP22.33■■□□□ 1.17
LINC01220-201ENST00000558575 KNDC1Q76NI1 1749 aa22.32■■□□□ 1.16
LINC01220-201ENST00000558575 NUTM2FA1L443 756 aa22.32■■□□□ 1.16
LINC01220-201ENST00000558575 R3HDM1Q15032 1099 aaKnown RBP22.31■■□□□ 1.16
LINC01220-201ENST00000558575 EN1Q05925 392 aaPredicted RBP22.3■■□□□ 1.16
LINC01220-201ENST00000558575 NBPF8Q3BBV2 869 aa22.3■■□□□ 1.16
LINC01220-201ENST00000558575 STK26Q9P289 416 aa22.3■■□□□ 1.16
LINC01220-201ENST00000558575 TONSLQ96HA7 1378 aa22.29■■□□□ 1.16
LINC01220-201ENST00000558575 NBPF1Q3BBV0 1214 aa22.29■■□□□ 1.16
LINC01220-201ENST00000558575 CABLES1Q8TDN4 633 aa22.28■■□□□ 1.16
LINC01220-201ENST00000558575 CCDC9Q9Y3X0 531 aaKnown RBP22.28■■□□□ 1.16
LINC01220-201ENST00000558575 ABCC11Q96J66 1382 aa22.27■■□□□ 1.16
LINC01220-201ENST00000558575 TNS3Q68CZ2 1445 aa22.27■■□□□ 1.16
LINC01220-201ENST00000558575 YTHDC2Q9H6S0 1430 aaKnown RBP22.26■■□□□ 1.15
LINC01220-201ENST00000558575 YY1P25490 414 aa22.26■■□□□ 1.15
LINC01220-201ENST00000558575 RREB1Q92766 1687 aa22.26■■□□□ 1.15
LINC01220-201ENST00000558575 THSD7AQ9UPZ6 1657 aa22.26■■□□□ 1.15
LINC01220-201ENST00000558575 ADGRB1O14514 1584 aa22.25■■□□□ 1.15
LINC01220-201ENST00000558575 DISP2A7MBM2 1401 aa22.25■■□□□ 1.15
LINC01220-201ENST00000558575 TECPR2O15040 1411 aa22.23■■□□□ 1.15
LINC01220-201ENST00000558575 NUP188Q5SRE5 1749 aa22.23■■□□□ 1.15
LINC01220-201ENST00000558575 FAM182BQ5T319 152 aa22.23■■□□□ 1.15
LINC01220-201ENST00000558575 KRT28Q7Z3Y7 464 aa22.23■■□□□ 1.15
LINC01220-201ENST00000558575 WAPLQ7Z5K2 1190 aa22.23■■□□□ 1.15
LINC01220-201ENST00000558575 PLEKHH1Q9ULM0 1364 aa22.23■■□□□ 1.15
LINC01220-201ENST00000558575 A0A0G2JS52 829 aa22.22■■□□□ 1.15
LINC01220-201ENST00000558575 PLEKHG5O94827 1062 aa22.22■■□□□ 1.15
LINC01220-201ENST00000558575 MYT1Q01538 1121 aa22.22■■□□□ 1.15
LINC01220-201ENST00000558575 SIRT1Q96EB6 747 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms