RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 ANKRD30BQ9BXX2 1392 aa14.96□□□□□ -0.02
USP3-207ENST00000558218 CLEC11AQ9Y240 323 aa14.95□□□□□ -0.02
USP3-207ENST00000558218 XRN1Q8IZH2 1706 aaKnown RBP14.95□□□□□ -0.02
USP3-207ENST00000558218 ROBO1Q9Y6N7 1651 aa14.94□□□□□ -0.02
USP3-207ENST00000558218 SPATA31E1Q6ZUB1 1445 aa14.94□□□□□ -0.02
USP3-207ENST00000558218 RAB3GAP2Q9H2M9 1393 aa14.94□□□□□ -0.02
USP3-207ENST00000558218 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.93□□□□□ -0.02
USP3-207ENST00000558218 MED1Q15648 1581 aaPredicted RBP14.93□□□□□ -0.02
USP3-207ENST00000558218 PPLO60437 1756 aa14.93□□□□□ -0.02
USP3-207ENST00000558218 PRAG1Q86YV5 1406 aa14.92□□□□□ -0.02
USP3-207ENST00000558218 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
USP3-207ENST00000558218 PTCH1Q13635 1447 aa14.9□□□□□ -0.02
USP3-207ENST00000558218 STAC3Q96MF2 364 aa14.89□□□□□ -0.03
USP3-207ENST00000558218 ADGRL3Q9HAR2 1447 aa14.89□□□□□ -0.03
USP3-207ENST00000558218 ADGRF5Q8IZF2 1346 aa14.89□□□□□ -0.03
USP3-207ENST00000558218 JCADQ9P266 1359 aa14.88□□□□□ -0.03
USP3-207ENST00000558218 SETD1AO15047 1707 aaKnown RBP14.87□□□□□ -0.03
USP3-207ENST00000558218 BRINP3Q76B58 766 aa14.87□□□□□ -0.03
USP3-207ENST00000558218 SIRT1Q96EB6 747 aa14.86□□□□□ -0.03
USP3-207ENST00000558218 PHLPP1O60346 1717 aa14.86□□□□□ -0.03
USP3-207ENST00000558218 ROBO2Q9HCK4 1378 aa14.85□□□□□ -0.03
USP3-207ENST00000558218 MST1RQ04912 1400 aa14.85□□□□□ -0.03
USP3-207ENST00000558218 C14orf93Q9H972 538 aaKnown RBP14.85□□□□□ -0.03
USP3-207ENST00000558218 SPATA31A6Q5VVP1 1343 aa14.85□□□□□ -0.03
USP3-207ENST00000558218 ABCC11Q96J66 1382 aa14.85□□□□□ -0.03
USP3-207ENST00000558218 AHDC1Q5TGY3 1603 aaPredicted RBP14.84□□□□□ -0.03
USP3-207ENST00000558218 IFT172Q9UG01 1749 aa14.84□□□□□ -0.03
USP3-207ENST00000558218 LRPPRCP42704 1394 aaKnown RBP14.84□□□□□ -0.03
USP3-207ENST00000558218 PIK3C2GO75747 1445 aa14.83□□□□□ -0.03
USP3-207ENST00000558218 SPDYE1Q8NFV5 336 aaPredicted RBP14.83□□□□□ -0.04
USP3-207ENST00000558218 TECPR2O15040 1411 aa14.83□□□□□ -0.04
USP3-207ENST00000558218 COL16A1Q07092 1604 aaPredicted RBP14.82□□□□□ -0.04
USP3-207ENST00000558218 LRRC59Q96AG4 307 aaKnown RBP14.82□□□□□ -0.04
USP3-207ENST00000558218 NRXN1Q9ULB1 1477 aa14.82□□□□□ -0.04
USP3-207ENST00000558218 MYOM2P54296 1465 aa14.81□□□□□ -0.04
USP3-207ENST00000558218 RGS17Q9UGC6 210 aaPredicted RBP14.8□□□□□ -0.04
USP3-207ENST00000558218 ASXL1Q8IXJ9 1541 aa14.8□□□□□ -0.04
USP3-207ENST00000558218 C1orf167Q5SNV9 1468 aa14.79□□□□□ -0.04
USP3-207ENST00000558218 TMEM132EQ6IEE7 984 aa14.79□□□□□ -0.04
USP3-207ENST00000558218 DHX57Q6P158 1386 aaKnown RBP14.79□□□□□ -0.04
USP3-207ENST00000558218 NALCNQ8IZF0 1738 aa14.79□□□□□ -0.04
USP3-207ENST00000558218 STK26Q9P289 416 aa14.79□□□□□ -0.04
USP3-207ENST00000558218 PIP4P2Q8N4L2 257 aa14.78□□□□□ -0.04
USP3-207ENST00000558218 YTHDC2Q9H6S0 1430 aaKnown RBP14.77□□□□□ -0.04
USP3-207ENST00000558218 CFAP70Q5T0N1 1121 aa14.77□□□□□ -0.05
USP3-207ENST00000558218 FKBP8Q14318 412 aa14.76□□□□□ -0.05
USP3-207ENST00000558218 WAPLQ7Z5K2 1190 aa14.76□□□□□ -0.05
USP3-207ENST00000558218 SHPRHQ149N8 1683 aa14.76□□□□□ -0.05
USP3-207ENST00000558218 LAMC1P11047 1609 aa14.76□□□□□ -0.05
USP3-207ENST00000558218 NHSL1Q5SYE7 1610 aa14.76□□□□□ -0.05
USP3-207ENST00000558218 KNDC1Q76NI1 1749 aa14.75□□□□□ -0.05
USP3-207ENST00000558218 SOS2Q07890 1332 aaPredicted RBP14.75□□□□□ -0.05
USP3-207ENST00000558218 DCAF11Q8TEB1 546 aa14.75□□□□□ -0.05
USP3-207ENST00000558218 ORAI2Q96SN7 254 aa14.75□□□□□ -0.05
USP3-207ENST00000558218 CDC42BPGQ6DT37 1551 aa14.74□□□□□ -0.05
USP3-207ENST00000558218 ZNF772Q68DY9 489 aaPredicted RBP14.73□□□□□ -0.05
USP3-207ENST00000558218 NPHP3Q7Z494 1330 aa14.72□□□□□ -0.05
USP3-207ENST00000558218 ESCO1Q5FWF5 840 aa14.72□□□□□ -0.05
USP3-207ENST00000558218 MEX3CQ5U5Q3 659 aaKnown RBP14.72□□□□□ -0.05
USP3-207ENST00000558218 POTEAQ6S8J7 498 aa14.71□□□□□ -0.05
USP3-207ENST00000558218 KDM2AQ9Y2K7 1162 aa14.71□□□□□ -0.05
USP3-207ENST00000558218 DLC1Q96QB1 1528 aa14.71□□□□□ -0.06
USP3-207ENST00000558218 PLEKHH1Q9ULM0 1364 aa14.7□□□□□ -0.06
USP3-207ENST00000558218 FXR2P51116 673 aaKnown RBP eCLIP14.69□□□□□ -0.06
USP3-207ENST00000558218 DDX17Q92841 729 aaKnown RBP14.69□□□□□ -0.06
USP3-207ENST00000558218 PRAM1Q96QH2 718 aa14.69□□□□□ -0.06
USP3-207ENST00000558218 POGKQ9P215 609 aa14.69□□□□□ -0.06
USP3-207ENST00000558218 PNPLA6Q8IY17 1366 aa14.69□□□□□ -0.06
USP3-207ENST00000558218 LRP6O75581 1613 aa14.68□□□□□ -0.06
USP3-207ENST00000558218 NUTM2BA6NNL0 878 aaPredicted RBP14.67□□□□□ -0.06
USP3-207ENST00000558218 NUTM2EB1AL46 878 aaPredicted RBP14.67□□□□□ -0.06
USP3-207ENST00000558218 FOXO3O43524 673 aa14.67□□□□□ -0.06
USP3-207ENST00000558218 PRR29P0C7W0 189 aa14.67□□□□□ -0.06
USP3-207ENST00000558218 NUTM2AQ8IVF1 878 aaPredicted RBP14.67□□□□□ -0.06
USP3-207ENST00000558218 ADGRB1O14514 1584 aa14.67□□□□□ -0.06
USP3-207ENST00000558218 CHADLQ6NUI6 762 aa14.66□□□□□ -0.06
USP3-207ENST00000558218 TRAK1Q9UPV9 953 aa14.65□□□□□ -0.06
USP3-207ENST00000558218 FMN2Q9NZ56 1722 aa14.65□□□□□ -0.06
USP3-207ENST00000558218 PSME1Q06323 249 aa14.64□□□□□ -0.07
USP3-207ENST00000558218 EIF3AQ14152 1382 aaKnown RBP14.63□□□□□ -0.07
USP3-207ENST00000558218 NUTM2FA1L443 756 aa14.63□□□□□ -0.07
USP3-207ENST00000558218 PHF8Q9UPP1 1060 aa14.63□□□□□ -0.07
USP3-207ENST00000558218 ANKARQ7Z5J8 1434 aa14.63□□□□□ -0.07
USP3-207ENST00000558218 PXDNQ92626 1479 aa14.63□□□□□ -0.07
USP3-207ENST00000558218 PRKAR2AP13861 404 aaKnown RBP14.62□□□□□ -0.07
USP3-207ENST00000558218 RXRBP28702 533 aa14.62□□□□□ -0.07
USP3-207ENST00000558218 KIF1AQ12756 1690 aa14.61□□□□□ -0.07
USP3-207ENST00000558218 SAFB2Q14151 953 aaKnown RBP eCLIP14.61□□□□□ -0.07
USP3-207ENST00000558218 KRT28Q7Z3Y7 464 aa14.61□□□□□ -0.07
USP3-207ENST00000558218 NGLY1Q96IV0 654 aa14.61□□□□□ -0.07
USP3-207ENST00000558218 COL22A1Q8NFW1 1626 aaPredicted RBP14.61□□□□□ -0.07
USP3-207ENST00000558218 AFF2P51816 1311 aa14.61□□□□□ -0.07
USP3-207ENST00000558218 ADGRB2O60241 1585 aa14.6□□□□□ -0.07
USP3-207ENST00000558218 WASLO00401 505 aaPredicted RBP14.6□□□□□ -0.07
USP3-207ENST00000558218 FNBP4Q8N3X1 1017 aaPredicted RBP14.6□□□□□ -0.07
USP3-207ENST00000558218 C8orf37Q96NL8 207 aa14.6□□□□□ -0.07
USP3-207ENST00000558218 KIAA1210Q9ULL0 1709 aa14.6□□□□□ -0.07
USP3-207ENST00000558218 SPATA31A3Q5VYP0 1347 aa14.6□□□□□ -0.07
USP3-207ENST00000558218 CDK12Q9NYV4 1490 aaPredicted RBP14.58□□□□□ -0.08
USP3-207ENST00000558218 ADAMTS2O95450 1211 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms