RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 FDX1P10109 184 aa12.17□□□□□ -0.46
RTF1-204ENST00000558117 GUCA2AQ02747 115 aa12.17□□□□□ -0.46
RTF1-204ENST00000558117 SPSB2Q99619 263 aa12.17□□□□□ -0.46
RTF1-204ENST00000558117 MOXD2PA6NHM9 499 aa12.16□□□□□ -0.46
RTF1-204ENST00000558117 RSPH6AQ9H0K4 717 aa12.16□□□□□ -0.46
RTF1-204ENST00000558117 SALL2Q9Y467 1007 aaPredicted RBP12.16□□□□□ -0.46
RTF1-204ENST00000558117 NDUFV2P19404 249 aa12.14□□□□□ -0.47
RTF1-204ENST00000558117 RNF19BQ6ZMZ0 732 aa12.14□□□□□ -0.47
RTF1-204ENST00000558117 BRICD5Q6PL45 260 aa12.13□□□□□ -0.47
RTF1-204ENST00000558117 SLC6A16Q9GZN6 736 aa12.13□□□□□ -0.47
RTF1-204ENST00000558117 MYSM1Q5VVJ2 828 aa12.12□□□□□ -0.47
RTF1-204ENST00000558117 RSBN1LQ6PCB5 846 aaPredicted RBP12.12□□□□□ -0.47
RTF1-204ENST00000558117 THAP11Q96EK4 314 aa12.12□□□□□ -0.47
RTF1-204ENST00000558117 C6orf229H3BNL8 230 aa12.11□□□□□ -0.47
RTF1-204ENST00000558117 GJA5P36382 358 aa12.11□□□□□ -0.47
RTF1-204ENST00000558117 PPP1R18Q6NYC8 613 aa12.11□□□□□ -0.47
RTF1-204ENST00000558117 RIC3Q7Z5B4 369 aa12.11□□□□□ -0.47
RTF1-204ENST00000558117 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.11□□□□□ -0.47
RTF1-204ENST00000558117 S1PR4O95977 384 aa12.1□□□□□ -0.47
RTF1-204ENST00000558117 USB1Q9BQ65 265 aaKnown RBP12.1□□□□□ -0.47
RTF1-204ENST00000558117 ATP1B4Q9UN42 357 aaPredicted RBP12.1□□□□□ -0.47
RTF1-204ENST00000558117 SPTLC1O15269 473 aa12.09□□□□□ -0.47
RTF1-204ENST00000558117 CLK2P49760 499 aaKnown RBP12.09□□□□□ -0.47
RTF1-204ENST00000558117 MSS51Q4VC12 460 aa12.08□□□□□ -0.48
RTF1-204ENST00000558117 PCDHGC3Q9UN70 934 aa12.08□□□□□ -0.48
RTF1-204ENST00000558117 MTMR2Q13614 643 aa12.07□□□□□ -0.48
RTF1-204ENST00000558117 CSPP1Q1MSJ5 1256 aa12.07□□□□□ -0.48
RTF1-204ENST00000558117 RETREG3Q86VR2 466 aa12.07□□□□□ -0.48
RTF1-204ENST00000558117 SCRIBQ14160 1630 aa12.07□□□□□ -0.48
RTF1-204ENST00000558117 SH3D19Q5HYK7 790 aa12.06□□□□□ -0.48
RTF1-204ENST00000558117 SYMPKQ92797 1274 aaKnown RBP12.06□□□□□ -0.48
RTF1-204ENST00000558117 POLR3EQ9NVU0 708 aa12.06□□□□□ -0.48
RTF1-204ENST00000558117 FAM160A2Q8N612 972 aaPredicted RBP12.05□□□□□ -0.48
RTF1-204ENST00000558117 ZBTB3Q9H5J0 574 aa12.05□□□□□ -0.48
RTF1-204ENST00000558117 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
RTF1-204ENST00000558117 SPDYE5A6NIY4 337 aa12.04□□□□□ -0.48
RTF1-204ENST00000558117 PRDM9Q9NQV7 894 aa12.04□□□□□ -0.48
RTF1-204ENST00000558117 LIMD1Q9UGP4 676 aa12.04□□□□□ -0.48
RTF1-204ENST00000558117 RNF223E7ERA6 249 aa12.03□□□□□ -0.48
RTF1-204ENST00000558117 SKIV2LQ15477 1246 aaKnown RBP12.03□□□□□ -0.48
RTF1-204ENST00000558117 PRPF38BQ5VTL8 546 aaKnown RBP12.03□□□□□ -0.48
RTF1-204ENST00000558117 PCDHB15Q9Y5E8 787 aa12.03□□□□□ -0.48
RTF1-204ENST00000558117 NUTM2BA6NNL0 878 aaPredicted RBP12.02□□□□□ -0.49
RTF1-204ENST00000558117 NUTM2EB1AL46 878 aaPredicted RBP12.02□□□□□ -0.49
RTF1-204ENST00000558117 TUSC1Q2TAM9 212 aa12.02□□□□□ -0.49
RTF1-204ENST00000558117 NUTM2DQ5VT03 806 aaPredicted RBP12.02□□□□□ -0.49
RTF1-204ENST00000558117 NUTM2AQ8IVF1 878 aaPredicted RBP12.02□□□□□ -0.49
RTF1-204ENST00000558117 ANKLE1Q8NAG6 615 aa12.02□□□□□ -0.49
RTF1-204ENST00000558117 PROCA1Q8NCQ7 364 aaPredicted RBP12.02□□□□□ -0.49
RTF1-204ENST00000558117 RGS20O76081 388 aa12.01□□□□□ -0.49
RTF1-204ENST00000558117 NESP48681 1621 aa12□□□□□ -0.49
RTF1-204ENST00000558117 PPEF1O14829 653 aaPredicted RBP12□□□□□ -0.49
RTF1-204ENST00000558117 HRCP23327 699 aa12□□□□□ -0.49
RTF1-204ENST00000558117 JUNDP17535 347 aa11.99□□□□□ -0.49
RTF1-204ENST00000558117 PRR7Q8TB68 274 aa11.99□□□□□ -0.49
RTF1-204ENST00000558117 CABLES1Q8TDN4 633 aa11.99□□□□□ -0.49
RTF1-204ENST00000558117 FCF1Q9Y324 198 aaKnown RBP11.99□□□□□ -0.49
RTF1-204ENST00000558117 MMP16P51512 607 aa11.98□□□□□ -0.49
RTF1-204ENST00000558117 PCMTD1Q96MG8 357 aaPredicted RBP11.98□□□□□ -0.49
RTF1-204ENST00000558117 GOPCQ9HD26 462 aa11.98□□□□□ -0.49
RTF1-204ENST00000558117 DXOO77932 396 aaKnown RBP11.97□□□□□ -0.49
RTF1-204ENST00000558117 QPCTQ16769 361 aa11.97□□□□□ -0.49
RTF1-204ENST00000558117 FBXO31Q5XUX0 539 aaPredicted RBP11.97□□□□□ -0.49
RTF1-204ENST00000558117 TMEM132AQ24JP5 1023 aa11.96□□□□□ -0.49
RTF1-204ENST00000558117 TSC1Q92574 1164 aa11.96□□□□□ -0.49
RTF1-204ENST00000558117 LILRB3O75022 631 aa11.95□□□□□ -0.5
RTF1-204ENST00000558117 PRKD2Q9BZL6 878 aa11.95□□□□□ -0.5
RTF1-204ENST00000558117 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.94□□□□□ -0.5
RTF1-204ENST00000558117 DESI1Q6ICB0 168 aa11.93□□□□□ -0.5
RTF1-204ENST00000558117 CCDC24Q8N4L8 307 aa11.93□□□□□ -0.5
RTF1-204ENST00000558117 HELBQ8NG08 1087 aaPredicted RBP11.93□□□□□ -0.5
RTF1-204ENST00000558117 ZBTB24O43167 697 aaPredicted RBP11.92□□□□□ -0.5
RTF1-204ENST00000558117 NUDT12Q9BQG2 462 aa11.92□□□□□ -0.5
RTF1-204ENST00000558117 V9GY48 417 aaPredicted RBP11.92□□□□□ -0.5
RTF1-204ENST00000558117 RIMBP3CA6NJZ7 1639 aa11.91□□□□□ -0.5
RTF1-204ENST00000558117 RIMBP3BA6NNM3 1639 aa11.91□□□□□ -0.5
RTF1-204ENST00000558117 RIMBP3Q9UFD9 1639 aa11.91□□□□□ -0.5
RTF1-204ENST00000558117 CFAP99D6REC4 459 aa11.91□□□□□ -0.5
RTF1-204ENST00000558117 SLC19A1P41440 591 aa11.9□□□□□ -0.5
RTF1-204ENST00000558117 PTPRNQ16849 979 aa11.9□□□□□ -0.5
RTF1-204ENST00000558117 RTL5Q5HYW3 569 aaPredicted RBP11.9□□□□□ -0.5
RTF1-204ENST00000558117 BAZ1AQ9NRL2 1556 aaPredicted RBP11.9□□□□□ -0.5
RTF1-204ENST00000558117 NCAPD3P42695 1498 aa11.89□□□□□ -0.51
RTF1-204ENST00000558117 CCNYL3P0C7X3 344 aa11.88□□□□□ -0.51
RTF1-204ENST00000558117 PLA2G2CQ5R387 149 aa11.88□□□□□ -0.51
RTF1-204ENST00000558117 RPIAP49247 311 aa11.86□□□□□ -0.51
RTF1-204ENST00000558117 PPP2R2DQ66LE6 453 aa11.86□□□□□ -0.51
RTF1-204ENST00000558117 LIAT1Q6ZQX7 453 aa11.86□□□□□ -0.51
RTF1-204ENST00000558117 SMARCA2P51531 1590 aa11.84□□□□□ -0.51
RTF1-204ENST00000558117 LYPD8Q6UX82 237 aa11.84□□□□□ -0.51
RTF1-204ENST00000558117 CD2BP2O95400 341 aaKnown RBP11.83□□□□□ -0.52
RTF1-204ENST00000558117 CTHP32929 405 aa11.83□□□□□ -0.52
RTF1-204ENST00000558117 SPRYD7Q5W111 196 aa11.83□□□□□ -0.52
RTF1-204ENST00000558117 AP1G2O75843 785 aa11.82□□□□□ -0.52
RTF1-204ENST00000558117 RFC5P40937 340 aa11.82□□□□□ -0.52
RTF1-204ENST00000558117 EMID1Q96A84 441 aaPredicted RBP11.82□□□□□ -0.52
RTF1-204ENST00000558117 KCNH2Q12809 1159 aa11.81□□□□□ -0.52
RTF1-204ENST00000558117 ZNF697Q5TEC3 545 aa11.81□□□□□ -0.52
RTF1-204ENST00000558117 ZNF598Q86UK7 904 aaKnown RBP11.81□□□□□ -0.52
RTF1-204ENST00000558117 EVA1BQ9NVM1 165 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms