RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.58■■□□□ 1.04
NEDD1-213ENST00000557644 CERKQ8TCT0 537 aa21.57■■□□□ 1.04
NEDD1-213ENST00000557644 ADGRL3Q9HAR2 1447 aa21.56■■□□□ 1.04
NEDD1-213ENST00000557644 NALCNQ8IZF0 1738 aa21.55■■□□□ 1.04
NEDD1-213ENST00000557644 NCOA3Q9Y6Q9 1424 aa21.55■■□□□ 1.04
NEDD1-213ENST00000557644 EIF4G2P78344 907 aaKnown RBP eCLIP21.54■■□□□ 1.04
NEDD1-213ENST00000557644 C19orf44Q9H6X5 657 aa21.54■■□□□ 1.04
NEDD1-213ENST00000557644 HSPA5P11021 654 aaKnown RBP21.54■■□□□ 1.04
NEDD1-213ENST00000557644 MSH6P52701 1360 aa21.53■■□□□ 1.04
NEDD1-213ENST00000557644 QRICH2Q9H0J4 1663 aa21.52■■□□□ 1.04
NEDD1-213ENST00000557644 TESK2Q96S53 571 aa21.52■■□□□ 1.04
NEDD1-213ENST00000557644 NUTM2FA1L443 756 aa21.49■■□□□ 1.03
NEDD1-213ENST00000557644 ATF3P18847 181 aa21.48■■□□□ 1.03
NEDD1-213ENST00000557644 WASLO00401 505 aaPredicted RBP21.47■■□□□ 1.03
NEDD1-213ENST00000557644 SBNO2Q9Y2G9 1366 aa21.47■■□□□ 1.03
NEDD1-213ENST00000557644 ADGRB2O60241 1585 aa21.46■■□□□ 1.03
NEDD1-213ENST00000557644 CADPS2Q86UW7 1296 aa21.46■■□□□ 1.03
NEDD1-213ENST00000557644 CDC42BPGQ6DT37 1551 aa21.46■■□□□ 1.03
NEDD1-213ENST00000557644 CDK19Q9BWU1 502 aa21.46■■□□□ 1.03
NEDD1-213ENST00000557644 DCCP43146 1447 aa21.46■■□□□ 1.03
NEDD1-213ENST00000557644 TULP4Q9NRJ4 1543 aa21.45■■□□□ 1.03
NEDD1-213ENST00000557644 IQSEC2Q5JU85 1478 aa21.45■■□□□ 1.02
NEDD1-213ENST00000557644 CABP2Q9NPB3 220 aa21.44■■□□□ 1.02
NEDD1-213ENST00000557644 EVC2Q86UK5 1308 aa21.43■■□□□ 1.02
NEDD1-213ENST00000557644 UBAP1LF5GYI3 381 aa21.43■■□□□ 1.02
NEDD1-213ENST00000557644 DISP3Q9P2K9 1392 aa21.42■■□□□ 1.02
NEDD1-213ENST00000557644 SRPK2P78362 688 aaKnown RBP21.42■■□□□ 1.02
NEDD1-213ENST00000557644 SLAIN2Q9P270 581 aa21.42■■□□□ 1.02
NEDD1-213ENST00000557644 MST1RQ04912 1400 aa21.42■■□□□ 1.02
NEDD1-213ENST00000557644 PRR36Q9H6K5 1346 aa21.41■■□□□ 1.02
NEDD1-213ENST00000557644 TOM1O60784 492 aa21.4■■□□□ 1.02
NEDD1-213ENST00000557644 FMN2Q9NZ56 1722 aa21.4■■□□□ 1.02
NEDD1-213ENST00000557644 TMF1P82094 1093 aa21.39■■□□□ 1.02
NEDD1-213ENST00000557644 C1orf167Q5SNV9 1468 aa21.39■■□□□ 1.01
NEDD1-213ENST00000557644 C11orf95C9JLR9 678 aaPredicted RBP21.38■■□□□ 1.01
NEDD1-213ENST00000557644 PIP4K2BP78356 416 aa21.38■■□□□ 1.01
NEDD1-213ENST00000557644 NUDT16Q96DE0 195 aaKnown RBP21.38■■□□□ 1.01
NEDD1-213ENST00000557644 ORAI2Q96SN7 254 aa21.38■■□□□ 1.01
NEDD1-213ENST00000557644 USP32Q8NFA0 1604 aa21.37■■□□□ 1.01
NEDD1-213ENST00000557644 ATP7BP35670 1465 aa21.36■■□□□ 1.01
NEDD1-213ENST00000557644 ESCO1Q5FWF5 840 aa21.36■■□□□ 1.01
NEDD1-213ENST00000557644 SLC24A1O60721 1099 aa21.35■■□□□ 1.01
NEDD1-213ENST00000557644 SCAF1Q9H7N4 1312 aaKnown RBP21.35■■□□□ 1.01
NEDD1-213ENST00000557644 ANKARQ7Z5J8 1434 aa21.34■■□□□ 1.01
NEDD1-213ENST00000557644 RGPD8O14715 1765 aaPredicted RBP21.34■■□□□ 1.01
NEDD1-213ENST00000557644 BRINP3Q76B58 766 aa21.33■■□□□ 1.01
NEDD1-213ENST00000557644 POLR3GLQ9BT43 218 aa21.33■■□□□ 1
NEDD1-213ENST00000557644 CCDC61Q9Y6R9 512 aa21.32■■□□□ 1
NEDD1-213ENST00000557644 PMFBP1Q8TBY8 1022 aa21.32■■□□□ 1
NEDD1-213ENST00000557644 CABP1Q9NZU7 370 aa21.3■■□□□ 1
NEDD1-213ENST00000557644 DDX17Q92841 729 aaKnown RBP21.3■■□□□ 1
NEDD1-213ENST00000557644 ATAD2Q6PL18 1390 aa21.3■■□□□ 1
NEDD1-213ENST00000557644 PPIP5K1Q6PFW1 1433 aa21.29■■□□□ 1
NEDD1-213ENST00000557644 PHF8Q9UPP1 1060 aa21.29■■□□□ 1
NEDD1-213ENST00000557644 KIF7Q2M1P5 1343 aa21.29■■□□□ 1
NEDD1-213ENST00000557644 CDCA8Q53HL2 280 aa21.29■■□□□ 1
NEDD1-213ENST00000557644 TMC1Q8TDI8 760 aa21.29■■□□□ 1
NEDD1-213ENST00000557644 ROBO1Q9Y6N7 1651 aa21.28■■□□□ 1
NEDD1-213ENST00000557644 PUS7Q96PZ0 661 aaKnown RBP21.28■■□□□ 1
NEDD1-213ENST00000557644 SLC12A5Q9H2X9 1139 aa21.28■■□□□ 1
NEDD1-213ENST00000557644 FOXO3O43524 673 aa21.27■■□□□ 1
NEDD1-213ENST00000557644 TOPAZ1Q8N9V7 1692 aa21.27■□□□□ 0.99
NEDD1-213ENST00000557644 WASHC2AQ641Q2 1341 aa21.26■□□□□ 0.99
NEDD1-213ENST00000557644 PLEKHG3A1L390 1219 aa21.25■□□□□ 0.99
NEDD1-213ENST00000557644 XPCQ01831 940 aaPredicted RBP21.24■□□□□ 0.99
NEDD1-213ENST00000557644 NGDNQ8NEJ9 315 aaKnown RBP21.24■□□□□ 0.99
NEDD1-213ENST00000557644 ACEP12821 1306 aa21.24■□□□□ 0.99
NEDD1-213ENST00000557644 ITSN1Q15811 1721 aa21.23■□□□□ 0.99
NEDD1-213ENST00000557644 CCDC7Q96M83 1385 aa21.23■□□□□ 0.99
NEDD1-213ENST00000557644 FBXO41Q8TF61 875 aa21.21■□□□□ 0.99
NEDD1-213ENST00000557644 POLR3AO14802 1390 aaPredicted RBP21.2■□□□□ 0.98
NEDD1-213ENST00000557644 KIF1AQ12756 1690 aa21.2■□□□□ 0.98
NEDD1-213ENST00000557644 CD163L1Q9NR16 1453 aa21.2■□□□□ 0.98
NEDD1-213ENST00000557644 NPHP3Q7Z494 1330 aa21.19■□□□□ 0.98
NEDD1-213ENST00000557644 PSME1Q06323 249 aa21.19■□□□□ 0.98
NEDD1-213ENST00000557644 MYOM1P52179 1685 aa21.19■□□□□ 0.98
NEDD1-213ENST00000557644 NINLQ9Y2I6 1382 aa21.18■□□□□ 0.98
NEDD1-213ENST00000557644 A0A1W2PP64 1363 aa21.17■□□□□ 0.98
NEDD1-213ENST00000557644 CPSF1Q10570 1443 aaKnown RBP21.17■□□□□ 0.98
NEDD1-213ENST00000557644 KRT28Q7Z3Y7 464 aa21.17■□□□□ 0.98
NEDD1-213ENST00000557644 NHSL1Q5SYE7 1610 aa21.16■□□□□ 0.98
NEDD1-213ENST00000557644 ZNF316A6NFI3 1004 aaPredicted RBP21.16■□□□□ 0.98
NEDD1-213ENST00000557644 AHDC1Q5TGY3 1603 aaPredicted RBP21.15■□□□□ 0.98
NEDD1-213ENST00000557644 HSPA1LP34931 641 aa21.15■□□□□ 0.98
NEDD1-213ENST00000557644 TERF2IPQ9NYB0 399 aa21.15■□□□□ 0.98
NEDD1-213ENST00000557644 PXDNQ92626 1479 aa21.15■□□□□ 0.98
NEDD1-213ENST00000557644 SOS2Q07890 1332 aaPredicted RBP21.15■□□□□ 0.98
NEDD1-213ENST00000557644 KTN1Q86UP2 1357 aaKnown RBP21.14■□□□□ 0.97
NEDD1-213ENST00000557644 ANKRD36BQ8N2N9 1353 aa21.14■□□□□ 0.97
NEDD1-213ENST00000557644 HDGFL2Q7Z4V5 671 aaPredicted RBP21.14■□□□□ 0.97
NEDD1-213ENST00000557644 USP6P35125 1406 aa21.13■□□□□ 0.97
NEDD1-213ENST00000557644 ZNF692Q9BU19 519 aaPredicted RBP21.13■□□□□ 0.97
NEDD1-213ENST00000557644 PANK3Q9H999 370 aa21.13■□□□□ 0.97
NEDD1-213ENST00000557644 PAK3O75914 559 aaPredicted RBP21.12■□□□□ 0.97
NEDD1-213ENST00000557644 CARD14Q9BXL6 1004 aa21.12■□□□□ 0.97
NEDD1-213ENST00000557644 PHLPP1O60346 1717 aa21.12■□□□□ 0.97
NEDD1-213ENST00000557644 AKAP12Q02952 1782 aa21.1■□□□□ 0.97
NEDD1-213ENST00000557644 COL16A1Q07092 1604 aaPredicted RBP21.1■□□□□ 0.97
NEDD1-213ENST00000557644 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.09■□□□□ 0.97
NEDD1-213ENST00000557644 SSH2Q76I76 1423 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms