RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 CCDC181Q5TID7 509 aa10.54□□□□□ -0.72
SYNE3-205ENST00000557275 KIF15Q9NS87 1388 aa10.54□□□□□ -0.72
SYNE3-205ENST00000557275 BAZ1AQ9NRL2 1556 aaPredicted RBP10.54□□□□□ -0.72
SYNE3-205ENST00000557275 GTF2E1P29083 439 aaPredicted RBP10.54□□□□□ -0.72
SYNE3-205ENST00000557275 RBM33Q96EV2 1170 aaKnown RBP10.54□□□□□ -0.72
SYNE3-205ENST00000557275 SART3Q15020 963 aaKnown RBP10.54□□□□□ -0.72
SYNE3-205ENST00000557275 CALCOCO1Q9P1Z2 691 aa10.54□□□□□ -0.72
SYNE3-205ENST00000557275 DDX19BQ9UMR2 479 aa10.54□□□□□ -0.72
SYNE3-205ENST00000557275 SMC3Q9UQE7 1217 aa10.54□□□□□ -0.72
SYNE3-205ENST00000557275 CETN2P41208 172 aa10.53□□□□□ -0.72
SYNE3-205ENST00000557275 DZIP1LQ8IYY4 767 aaKnown RBP10.53□□□□□ -0.72
SYNE3-205ENST00000557275 FAM114A1Q8IWE2 563 aa10.53□□□□□ -0.72
SYNE3-205ENST00000557275 CBFA2T2O43439 604 aa10.53□□□□□ -0.72
SYNE3-205ENST00000557275 SEPT6Q14141 434 aa10.53□□□□□ -0.72
SYNE3-205ENST00000557275 GRIPAP1Q4V328 841 aa10.52□□□□□ -0.72
SYNE3-205ENST00000557275 SETSIPP0DME0 302 aa10.52□□□□□ -0.72
SYNE3-205ENST00000557275 DDX12PQ92771 950 aa10.52□□□□□ -0.72
SYNE3-205ENST00000557275 RALYLQ86SE5 291 aaKnown RBP10.52□□□□□ -0.73
SYNE3-205ENST00000557275 TRIM5Q9C035 493 aa10.52□□□□□ -0.73
SYNE3-205ENST00000557275 SDF4Q9BRK5 362 aa10.52□□□□□ -0.73
SYNE3-205ENST00000557275 ANKRD62A6NC57 917 aa10.51□□□□□ -0.73
SYNE3-205ENST00000557275 JAKMIP3Q5VZ66 844 aa10.51□□□□□ -0.73
SYNE3-205ENST00000557275 HIP1O00291 1037 aa10.51□□□□□ -0.73
SYNE3-205ENST00000557275 DCAF11Q8TEB1 546 aa10.51□□□□□ -0.73
SYNE3-205ENST00000557275 DDX23Q9BUQ8 820 aaKnown RBP10.51□□□□□ -0.73
SYNE3-205ENST00000557275 ZNF396Q96N95 335 aaPredicted RBP10.51□□□□□ -0.73
SYNE3-205ENST00000557275 VPS37DQ86XT2 251 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 SETD5Q9C0A6 1442 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 TTLL5Q6EMB2 1281 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 GCOM1H8Y6P7 765 aaPredicted RBP10.5□□□□□ -0.73
SYNE3-205ENST00000557275 MYZAPP0CAP1 466 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 CDK5RAP3Q96JB5 506 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 E9PSI1 815 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 C6orf163Q5TEZ5 329 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 CSB-PGBD3P0DP91 1061 aa10.5□□□□□ -0.73
SYNE3-205ENST00000557275 IMMTQ16891 758 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 GIGYF2Q6Y7W6 1299 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 NFXL1Q6ZNB6 911 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 NOL8Q76FK4 1167 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 RILPL2Q969X0 211 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 CCDC192P0DO97 292 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 ANKRD30AQ9BXX3 1397 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 TNIKQ9UKE5 1360 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 SLC3A2P08195 630 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 SMC1AQ14683 1233 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 CWC22Q9HCG8 908 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 DDX58O95786 925 aaKnown RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 BCCIPQ9P287 314 aaKnown RBP eCLIP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 PPFIBP1Q86W92 1011 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 PDILTQ8N807 584 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 CRACR2AQ9BSW2 395 aa10.49□□□□□ -0.73
SYNE3-205ENST00000557275 ZNF330Q9Y3S2 320 aaPredicted RBP10.49□□□□□ -0.73
SYNE3-205ENST00000557275 ANO2Q9NQ90 1003 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 MAP2K1Q02750 393 aaPredicted RBP10.48□□□□□ -0.73
SYNE3-205ENST00000557275 ZKSCAN2Q63HK3 967 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 POTEJP0CG39 1038 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 SPECC1LQ69YQ0 1117 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 TMCO3Q6UWJ1 677 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 ZBED9Q6R2W3 1325 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 SLC4A10Q6U841 1118 aa10.48□□□□□ -0.73
SYNE3-205ENST00000557275 SMC2O95347 1197 aa10.47□□□□□ -0.73
SYNE3-205ENST00000557275 KIAA1328Q86T90 577 aa10.47□□□□□ -0.73
SYNE3-205ENST00000557275 DDX46Q7L014 1031 aaKnown RBP10.47□□□□□ -0.73
SYNE3-205ENST00000557275 IFIT2P09913 472 aaKnown RBP10.47□□□□□ -0.73
SYNE3-205ENST00000557275 POTEB2H3BUK9 544 aa10.47□□□□□ -0.73
SYNE3-205ENST00000557275 TAOK3Q9H2K8 898 aa10.47□□□□□ -0.73
SYNE3-205ENST00000557275 TSPY26PQ9H489 355 aa10.47□□□□□ -0.73
SYNE3-205ENST00000557275 C9orf78Q9NZ63 289 aaPredicted RBP10.46□□□□□ -0.73
SYNE3-205ENST00000557275 PDE4AP27815 886 aa10.46□□□□□ -0.73
SYNE3-205ENST00000557275 DAAM2Q86T65 1068 aa10.46□□□□□ -0.73
SYNE3-205ENST00000557275 SREK1Q8WXA9 508 aaKnown RBP10.46□□□□□ -0.73
SYNE3-205ENST00000557275 VPS37CA5D8V6 355 aaPredicted RBP10.46□□□□□ -0.73
SYNE3-205ENST00000557275 SSR1P43307 286 aaKnown RBP10.46□□□□□ -0.73
SYNE3-205ENST00000557275 SWAP70Q9UH65 585 aa10.46□□□□□ -0.73
SYNE3-205ENST00000557275 PPP1R12BO60237 982 aaPredicted RBP10.46□□□□□ -0.73
SYNE3-205ENST00000557275 CCDC148Q8NFR7 591 aa10.46□□□□□ -0.74
SYNE3-205ENST00000557275 ANKRD45Q5TZF3 282 aa10.46□□□□□ -0.74
SYNE3-205ENST00000557275 TAX1BP1Q86VP1 789 aa10.46□□□□□ -0.74
SYNE3-205ENST00000557275 ZNF397Q8NF99 534 aaPredicted RBP10.46□□□□□ -0.74
SYNE3-205ENST00000557275 WDR66Q8TBY9 1149 aa10.46□□□□□ -0.74
SYNE3-205ENST00000557275 ANKRD1Q15327 319 aa10.45□□□□□ -0.74
SYNE3-205ENST00000557275 ERC1Q8IUD2 1116 aa10.45□□□□□ -0.74
SYNE3-205ENST00000557275 ZWINTO95229 277 aa10.45□□□□□ -0.74
SYNE3-205ENST00000557275 VPS36Q86VN1 386 aa10.45□□□□□ -0.74
SYNE3-205ENST00000557275 BAZ1BQ9UIG0 1483 aaKnown RBP10.44□□□□□ -0.74
SYNE3-205ENST00000557275 BBXQ8WY36 941 aaPredicted RBP10.44□□□□□ -0.74
SYNE3-205ENST00000557275 HMGB3O15347 200 aaKnown RBP10.44□□□□□ -0.74
SYNE3-205ENST00000557275 HOOK3Q86VS8 718 aa10.44□□□□□ -0.74
SYNE3-205ENST00000557275 RSPH4AQ5TD94 716 aa10.44□□□□□ -0.74
SYNE3-205ENST00000557275 MYBBP1AQ9BQG0 1328 aaKnown RBP10.44□□□□□ -0.74
SYNE3-205ENST00000557275 CTR9Q6PD62 1173 aa10.44□□□□□ -0.74
SYNE3-205ENST00000557275 CENPHQ9H3R5 247 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 FOXD4L1Q9NU39 408 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 FOXD4L5Q5VV16 416 aaPredicted RBP10.43□□□□□ -0.74
SYNE3-205ENST00000557275 FOXD4L4Q8WXT5 416 aaPredicted RBP10.43□□□□□ -0.74
SYNE3-205ENST00000557275 C1orf141Q5JVX7 400 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 NEBLO76041 1014 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 USH1CQ9Y6N9 552 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 TMCO5BA8MYB1 307 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 FERMT1Q9BQL6 677 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms