RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ZBTB24O43167 697 aaPredicted RBP5.95□□□□□ -1.46
SLIRP-208ENST00000556956 TRIM32Q13049 653 aa5.95□□□□□ -1.46
SLIRP-208ENST00000556956 FAM160A2Q8N612 972 aaPredicted RBP5.95□□□□□ -1.46
SLIRP-208ENST00000556956 SPOCK3Q9BQ16 436 aa5.95□□□□□ -1.46
SLIRP-208ENST00000556956 PRDM9Q9NQV7 894 aa5.95□□□□□ -1.46
SLIRP-208ENST00000556956 RYDENQ9NUL5 291 aaKnown RBP5.95□□□□□ -1.46
SLIRP-208ENST00000556956 ITGB2P05107 769 aa5.94□□□□□ -1.46
SLIRP-208ENST00000556956 SLC10A3P09131 477 aa5.94□□□□□ -1.46
SLIRP-208ENST00000556956 CHGAP10645 457 aaKnown RBP5.94□□□□□ -1.46
SLIRP-208ENST00000556956 ZNF385CQ66K41 422 aaPredicted RBP5.94□□□□□ -1.46
SLIRP-208ENST00000556956 CADPS2Q86UW7 1296 aa5.94□□□□□ -1.46
SLIRP-208ENST00000556956 CAPN5O15484 640 aaPredicted RBP5.93□□□□□ -1.46
SLIRP-208ENST00000556956 DCAF8L2P0C7V8 631 aa5.93□□□□□ -1.46
SLIRP-208ENST00000556956 PDIA6Q15084 440 aa5.93□□□□□ -1.46
SLIRP-208ENST00000556956 PLA2G4EQ3MJ16 856 aa5.93□□□□□ -1.46
SLIRP-208ENST00000556956 KANK3Q6NY19 840 aa5.93□□□□□ -1.46
SLIRP-208ENST00000556956 NPDC1Q9NQX5 325 aaPredicted RBP5.93□□□□□ -1.46
SLIRP-208ENST00000556956 KRTAP4-7Q9BYR0 210 aa5.92□□□□□ -1.46
SLIRP-208ENST00000556956 DNAJC5Q9H3Z4 198 aa5.92□□□□□ -1.46
SLIRP-208ENST00000556956 GRXCR2A6NFK2 248 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 K7ELQ4 463 aaPredicted RBP5.91□□□□□ -1.46
SLIRP-208ENST00000556956 ALDH1A1P00352 501 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 PROCP04070 461 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 WHAMMQ8TF30 809 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 THAP11Q96EK4 314 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 CNTNAP3BQ96NU0 1288 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 CNTNAP3Q9BZ76 1288 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 TMEM134Q9H6X4 195 aa5.91□□□□□ -1.46
SLIRP-208ENST00000556956 DNAJB2P25686 324 aa5.9□□□□□ -1.46
SLIRP-208ENST00000556956 KRTAP19-1Q8IUB9 90 aa5.9□□□□□ -1.46
SLIRP-208ENST00000556956 GPR161Q8N6U8 529 aaKnown RBP5.9□□□□□ -1.46
SLIRP-208ENST00000556956 REPIN1Q9BWE0 567 aaKnown RBP5.9□□□□□ -1.46
SLIRP-208ENST00000556956 ARHGEF15O94989 841 aa5.89□□□□□ -1.47
SLIRP-208ENST00000556956 RC3H1Q5TC82 1133 aaKnown RBP5.89□□□□□ -1.47
SLIRP-208ENST00000556956 SVOPQ8N4V2 548 aa5.89□□□□□ -1.47
SLIRP-208ENST00000556956 PPFIA3O75145 1194 aa5.88□□□□□ -1.47
SLIRP-208ENST00000556956 OSBPP22059 807 aa5.88□□□□□ -1.47
SLIRP-208ENST00000556956 SKOR1P84550 965 aa5.87□□□□□ -1.47
SLIRP-208ENST00000556956 GTPBP6O43824 516 aaPredicted RBP5.86□□□□□ -1.47
SLIRP-208ENST00000556956 MARSP56192 900 aaKnown RBP5.86□□□□□ -1.47
SLIRP-208ENST00000556956 PURBQ96QR8 312 aaKnown RBP5.84□□□□□ -1.47
SLIRP-208ENST00000556956 RCCD1A6NED2 376 aa5.83□□□□□ -1.48
SLIRP-208ENST00000556956 SPDYE16A6NNV3 312 aaPredicted RBP5.83□□□□□ -1.48
SLIRP-208ENST00000556956 MORN1Q5T089 497 aa5.83□□□□□ -1.48
SLIRP-208ENST00000556956 GALNT6Q8NCL4 622 aa5.83□□□□□ -1.48
SLIRP-208ENST00000556956 SCARF2Q96GP6 870 aaPredicted RBP5.83□□□□□ -1.48
SLIRP-208ENST00000556956 DCAF5Q96JK2 942 aa5.83□□□□□ -1.48
SLIRP-208ENST00000556956 RTN4Q9NQC3 1192 aaKnown RBP5.83□□□□□ -1.48
SLIRP-208ENST00000556956 SIAH2O43255 324 aa5.81□□□□□ -1.48
SLIRP-208ENST00000556956 FMNL1O95466 1100 aaPredicted RBP5.81□□□□□ -1.48
SLIRP-208ENST00000556956 FECHP22830 423 aa5.81□□□□□ -1.48
SLIRP-208ENST00000556956 RNFT1Q5M7Z0 435 aa5.81□□□□□ -1.48
SLIRP-208ENST00000556956 MRPL14Q6P1L8 145 aaKnown RBP5.81□□□□□ -1.48
SLIRP-208ENST00000556956 COL25A1Q9BXS0 654 aaPredicted RBP5.81□□□□□ -1.48
SLIRP-208ENST00000556956 LCE1DQ5T752 114 aa5.8□□□□□ -1.48
SLIRP-208ENST00000556956 BBXQ8WY36 941 aaPredicted RBP5.8□□□□□ -1.48
SLIRP-208ENST00000556956 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.8□□□□□ -1.48
SLIRP-208ENST00000556956 SLC27A5Q9Y2P5 690 aa5.79□□□□□ -1.48
SLIRP-208ENST00000556956 WASF2Q9Y6W5 498 aa5.79□□□□□ -1.48
SLIRP-208ENST00000556956 FURINP09958 794 aa5.78□□□□□ -1.48
SLIRP-208ENST00000556956 SCARF1Q14162 830 aa5.78□□□□□ -1.48
SLIRP-208ENST00000556956 FAM161AQ3B820 660 aa5.78□□□□□ -1.48
SLIRP-208ENST00000556956 BRICD5Q6PL45 260 aa5.78□□□□□ -1.48
SLIRP-208ENST00000556956 RBM46Q8TBY0 533 aaKnown RBP5.78□□□□□ -1.48
SLIRP-208ENST00000556956 SLURP2P0DP57 97 aa5.77□□□□□ -1.49
SLIRP-208ENST00000556956 BAG6P46379 1132 aa5.77□□□□□ -1.49
SLIRP-208ENST00000556956 WNT7BP56706 349 aa5.77□□□□□ -1.49
SLIRP-208ENST00000556956 MSS51Q4VC12 460 aa5.77□□□□□ -1.49
SLIRP-208ENST00000556956 RNF19BQ6ZMZ0 732 aa5.77□□□□□ -1.49
SLIRP-208ENST00000556956 ADGRG1Q9Y653 693 aa5.77□□□□□ -1.49
SLIRP-208ENST00000556956 MAN1A2O60476 641 aa5.76□□□□□ -1.49
SLIRP-208ENST00000556956 FUT2Q10981 343 aa5.76□□□□□ -1.49
SLIRP-208ENST00000556956 SPRYD3Q8NCJ5 442 aa5.74□□□□□ -1.49
SLIRP-208ENST00000556956 SALL2Q9Y467 1007 aaPredicted RBP5.74□□□□□ -1.49
SLIRP-208ENST00000556956 MMP16P51512 607 aa5.73□□□□□ -1.49
SLIRP-208ENST00000556956 CNTNAP5Q8WYK1 1306 aa5.73□□□□□ -1.49
SLIRP-208ENST00000556956 LYPD4Q6UWN0 246 aa5.72□□□□□ -1.49
SLIRP-208ENST00000556956 GOLGA2P5Q9HBQ8 144 aa5.72□□□□□ -1.49
SLIRP-208ENST00000556956 TIMP2P16035 220 aa5.71□□□□□ -1.5
SLIRP-208ENST00000556956 ITGB7P26010 798 aa5.71□□□□□ -1.5
SLIRP-208ENST00000556956 ATP6V1AP38606 617 aa5.71□□□□□ -1.5
SLIRP-208ENST00000556956 EHBP1Q8NDI1 1231 aa5.71□□□□□ -1.5
SLIRP-208ENST00000556956 KRTAP4-9Q9BYQ8 210 aa5.71□□□□□ -1.5
SLIRP-208ENST00000556956 KRTAP4-2Q9BYR5 136 aa5.71□□□□□ -1.5
SLIRP-208ENST00000556956 CCDC24Q8N4L8 307 aa5.7□□□□□ -1.5
SLIRP-208ENST00000556956 C6orf118Q5T5N4 469 aa5.69□□□□□ -1.5
SLIRP-208ENST00000556956 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.68□□□□□ -1.5
SLIRP-208ENST00000556956 DXOO77932 396 aaKnown RBP5.68□□□□□ -1.5
SLIRP-208ENST00000556956 DNMT3LQ9UJW3 386 aa5.68□□□□□ -1.5
SLIRP-208ENST00000556956 WDR4P57081 412 aaKnown RBP5.67□□□□□ -1.5
SLIRP-208ENST00000556956 NNTQ13423 1086 aa5.67□□□□□ -1.5
SLIRP-208ENST00000556956 NANOS1Q8WY41 292 aaKnown RBP5.67□□□□□ -1.5
SLIRP-208ENST00000556956 TLL2Q9Y6L7 1015 aa5.67□□□□□ -1.5
SLIRP-208ENST00000556956 PHF20L1A8MW92 1017 aa5.66□□□□□ -1.5
SLIRP-208ENST00000556956 PAXIP1Q6ZW49 1069 aaPredicted RBP5.66□□□□□ -1.5
SLIRP-208ENST00000556956 CFAP44Q96MT7 982 aa5.66□□□□□ -1.5
SLIRP-208ENST00000556956 KLF16Q9BXK1 252 aaPredicted RBP5.66□□□□□ -1.5
SLIRP-208ENST00000556956 ADAMTS2O95450 1211 aa5.65□□□□□ -1.5
SLIRP-208ENST00000556956 CELA2BP08218 269 aaPredicted RBP5.65□□□□□ -1.5
SLIRP-208ENST00000556956 RSPH4AQ5TD94 716 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms