RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 SPATA31E1Q6ZUB1 1445 aa10.68□□□□□ -0.7
SCFD1-222ENST00000556768 KIF1BO60333 1816 aa10.67□□□□□ -0.7
SCFD1-222ENST00000556768 ADGRL3Q9HAR2 1447 aa10.67□□□□□ -0.7
SCFD1-222ENST00000556768 SPATA31A6Q5VVP1 1343 aa10.67□□□□□ -0.7
SCFD1-222ENST00000556768 TMEM132EQ6IEE7 984 aa10.67□□□□□ -0.7
SCFD1-222ENST00000556768 MED1Q15648 1581 aaPredicted RBP10.67□□□□□ -0.7
SCFD1-222ENST00000556768 PTCH1Q13635 1447 aa10.66□□□□□ -0.7
SCFD1-222ENST00000556768 ROBO2Q9HCK4 1378 aa10.66□□□□□ -0.7
SCFD1-222ENST00000556768 C14orf93Q9H972 538 aaKnown RBP10.66□□□□□ -0.7
SCFD1-222ENST00000556768 ROBO1Q9Y6N7 1651 aa10.66□□□□□ -0.7
SCFD1-222ENST00000556768 DCAF11Q8TEB1 546 aa10.65□□□□□ -0.7
SCFD1-222ENST00000556768 KDM2AQ9Y2K7 1162 aa10.65□□□□□ -0.7
SCFD1-222ENST00000556768 DHX57Q6P158 1386 aaKnown RBP10.65□□□□□ -0.7
SCFD1-222ENST00000556768 XIRP1Q702N8 1843 aaKnown RBP10.65□□□□□ -0.7
SCFD1-222ENST00000556768 ABCC11Q96J66 1382 aa10.64□□□□□ -0.71
SCFD1-222ENST00000556768 ESCO1Q5FWF5 840 aa10.64□□□□□ -0.71
SCFD1-222ENST00000556768 CFAP70Q5T0N1 1121 aa10.64□□□□□ -0.71
SCFD1-222ENST00000556768 WAPLQ7Z5K2 1190 aa10.64□□□□□ -0.71
SCFD1-222ENST00000556768 SIRT1Q96EB6 747 aa10.64□□□□□ -0.71
SCFD1-222ENST00000556768 NRXN3Q9Y4C0 1643 aa10.64□□□□□ -0.71
SCFD1-222ENST00000556768 LRPPRCP42704 1394 aaKnown RBP10.64□□□□□ -0.71
SCFD1-222ENST00000556768 NUTM2BA6NNL0 878 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-222ENST00000556768 NUTM2EB1AL46 878 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-222ENST00000556768 NUTM2AQ8IVF1 878 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-222ENST00000556768 POGKQ9P215 609 aa10.63□□□□□ -0.71
SCFD1-222ENST00000556768 MST1RQ04912 1400 aa10.63□□□□□ -0.71
SCFD1-222ENST00000556768 ORAI2Q96SN7 254 aa10.63□□□□□ -0.71
SCFD1-222ENST00000556768 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-222ENST00000556768 PIK3C2GO75747 1445 aa10.62□□□□□ -0.71
SCFD1-222ENST00000556768 ZNF772Q68DY9 489 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-222ENST00000556768 BBXQ8WY36 941 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-222ENST00000556768 XRN1Q8IZH2 1706 aaKnown RBP10.62□□□□□ -0.71
SCFD1-222ENST00000556768 PRAG1Q86YV5 1406 aa10.61□□□□□ -0.71
SCFD1-222ENST00000556768 C1orf167Q5SNV9 1468 aa10.61□□□□□ -0.71
SCFD1-222ENST00000556768 NPHP3Q7Z494 1330 aa10.61□□□□□ -0.71
SCFD1-222ENST00000556768 NUTM2FA1L443 756 aa10.61□□□□□ -0.71
SCFD1-222ENST00000556768 DDX17Q92841 729 aaKnown RBP10.61□□□□□ -0.71
SCFD1-222ENST00000556768 RGS17Q9UGC6 210 aaPredicted RBP10.61□□□□□ -0.71
SCFD1-222ENST00000556768 YTHDC2Q9H6S0 1430 aaKnown RBP10.6□□□□□ -0.71
SCFD1-222ENST00000556768 PRAM1Q96QH2 718 aa10.6□□□□□ -0.71
SCFD1-222ENST00000556768 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-222ENST00000556768 ASXL1Q8IXJ9 1541 aa10.6□□□□□ -0.71
SCFD1-222ENST00000556768 FOXO3O43524 673 aa10.59□□□□□ -0.71
SCFD1-222ENST00000556768 SAFB2Q14151 953 aaKnown RBP eCLIP10.59□□□□□ -0.71
SCFD1-222ENST00000556768 TECPR2O15040 1411 aa10.59□□□□□ -0.71
SCFD1-222ENST00000556768 PHLPP1O60346 1717 aa10.59□□□□□ -0.71
SCFD1-222ENST00000556768 POTEAQ6S8J7 498 aa10.58□□□□□ -0.72
SCFD1-222ENST00000556768 TRAK1Q9UPV9 953 aa10.58□□□□□ -0.72
SCFD1-222ENST00000556768 AHDC1Q5TGY3 1603 aaPredicted RBP10.58□□□□□ -0.72
SCFD1-222ENST00000556768 SOS2Q07890 1332 aaPredicted RBP10.57□□□□□ -0.72
SCFD1-222ENST00000556768 MYOM2P54296 1465 aa10.57□□□□□ -0.72
SCFD1-222ENST00000556768 TPRNQ4KMQ1 711 aa10.57□□□□□ -0.72
SCFD1-222ENST00000556768 NGLY1Q96IV0 654 aa10.57□□□□□ -0.72
SCFD1-222ENST00000556768 PPLO60437 1756 aa10.57□□□□□ -0.72
SCFD1-222ENST00000556768 PSME1Q06323 249 aa10.56□□□□□ -0.72
SCFD1-222ENST00000556768 C8orf37Q96NL8 207 aa10.56□□□□□ -0.72
SCFD1-222ENST00000556768 ADAMTS2O95450 1211 aa10.56□□□□□ -0.72
SCFD1-222ENST00000556768 NRXN1Q9ULB1 1477 aa10.56□□□□□ -0.72
SCFD1-222ENST00000556768 PLEKHH1Q9ULM0 1364 aa10.55□□□□□ -0.72
SCFD1-222ENST00000556768 RXRBP28702 533 aa10.55□□□□□ -0.72
SCFD1-222ENST00000556768 COL16A1Q07092 1604 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-222ENST00000556768 XPCQ01831 940 aaPredicted RBP10.54□□□□□ -0.72
SCFD1-222ENST00000556768 PAXIP1Q6ZW49 1069 aaPredicted RBP10.54□□□□□ -0.72
SCFD1-222ENST00000556768 PHF8Q9UPP1 1060 aa10.54□□□□□ -0.72
SCFD1-222ENST00000556768 PNPLA6Q8IY17 1366 aa10.54□□□□□ -0.72
SCFD1-222ENST00000556768 POLA2Q14181 598 aa10.54□□□□□ -0.72
SCFD1-222ENST00000556768 KRT28Q7Z3Y7 464 aa10.54□□□□□ -0.72
SCFD1-222ENST00000556768 AFF2P51816 1311 aa10.53□□□□□ -0.72
SCFD1-222ENST00000556768 SPOCK2Q92563 424 aa10.53□□□□□ -0.72
SCFD1-222ENST00000556768 HIRIP3Q9BW71 556 aaPredicted RBP10.53□□□□□ -0.72
SCFD1-222ENST00000556768 EIF3AQ14152 1382 aaKnown RBP10.53□□□□□ -0.72
SCFD1-222ENST00000556768 ECM2O94769 699 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-222ENST00000556768 LMOD2Q6P5Q4 547 aa10.52□□□□□ -0.73
SCFD1-222ENST00000556768 QTRT2Q9H974 415 aaKnown RBP10.52□□□□□ -0.73
SCFD1-222ENST00000556768 MINK1Q8N4C8 1332 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-222ENST00000556768 NEUROD1Q13562 356 aa10.51□□□□□ -0.73
SCFD1-222ENST00000556768 CDC42BPGQ6DT37 1551 aa10.51□□□□□ -0.73
SCFD1-222ENST00000556768 SETD1AO15047 1707 aaKnown RBP10.51□□□□□ -0.73
SCFD1-222ENST00000556768 NALCNQ8IZF0 1738 aa10.51□□□□□ -0.73
SCFD1-222ENST00000556768 WASLO00401 505 aaPredicted RBP10.51□□□□□ -0.73
SCFD1-222ENST00000556768 USP21Q9UK80 565 aa10.51□□□□□ -0.73
SCFD1-222ENST00000556768 LRP6O75581 1613 aa10.5□□□□□ -0.73
SCFD1-222ENST00000556768 TRIM26Q12899 539 aaPredicted RBP10.5□□□□□ -0.73
SCFD1-222ENST00000556768 NGDNQ8NEJ9 315 aaKnown RBP10.5□□□□□ -0.73
SCFD1-222ENST00000556768 PMFBP1Q8TBY8 1022 aa10.5□□□□□ -0.73
SCFD1-222ENST00000556768 CFAP44Q96MT7 982 aa10.5□□□□□ -0.73
SCFD1-222ENST00000556768 RBM6P78332 1123 aaKnown RBP10.49□□□□□ -0.73
SCFD1-222ENST00000556768 LAMC1P11047 1609 aa10.49□□□□□ -0.73
SCFD1-222ENST00000556768 GPRASP1Q5JY77 1395 aa10.49□□□□□ -0.73
SCFD1-222ENST00000556768 SPATA31A3Q5VYP0 1347 aa10.49□□□□□ -0.73
SCFD1-222ENST00000556768 KLHL34Q8N239 644 aa10.49□□□□□ -0.73
SCFD1-222ENST00000556768 L3MBTL2Q969R5 705 aa10.49□□□□□ -0.73
SCFD1-222ENST00000556768 TRPC5Q9UL62 973 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-222ENST00000556768 IFT172Q9UG01 1749 aa10.48□□□□□ -0.73
SCFD1-222ENST00000556768 SHPRHQ149N8 1683 aa10.48□□□□□ -0.73
SCFD1-222ENST00000556768 FNBP4Q8N3X1 1017 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-222ENST00000556768 SPINK5Q9NQ38 1064 aaPredicted RBP10.48□□□□□ -0.73
SCFD1-222ENST00000556768 DLC1Q96QB1 1528 aa10.48□□□□□ -0.73
SCFD1-222ENST00000556768 SIN3AQ96ST3 1273 aa10.47□□□□□ -0.73
SCFD1-222ENST00000556768 ANKARQ7Z5J8 1434 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms