RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 BRICD5Q6PL45 260 aa10.15□□□□□ -0.78
SCFD1-221ENST00000556534 PROCA1Q8NCQ7 364 aaPredicted RBP10.15□□□□□ -0.78
SCFD1-221ENST00000556534 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.15□□□□□ -0.78
SCFD1-221ENST00000556534 SALL2Q9Y467 1007 aaPredicted RBP10.15□□□□□ -0.78
SCFD1-221ENST00000556534 KCNC4Q03721 635 aa10.14□□□□□ -0.79
SCFD1-221ENST00000556534 QPCTQ16769 361 aa10.13□□□□□ -0.79
SCFD1-221ENST00000556534 CSPP1Q1MSJ5 1256 aa10.13□□□□□ -0.79
SCFD1-221ENST00000556534 SYMPKQ92797 1274 aaKnown RBP10.13□□□□□ -0.79
SCFD1-221ENST00000556534 PCMTD1Q96MG8 357 aaPredicted RBP10.13□□□□□ -0.79
SCFD1-221ENST00000556534 LILRB3O75022 631 aa10.12□□□□□ -0.79
SCFD1-221ENST00000556534 FMNL1O95466 1100 aaPredicted RBP10.12□□□□□ -0.79
SCFD1-221ENST00000556534 ADH1BP00325 375 aa10.12□□□□□ -0.79
SCFD1-221ENST00000556534 PRPF38BQ5VTL8 546 aaKnown RBP10.12□□□□□ -0.79
SCFD1-221ENST00000556534 FBXO31Q5XUX0 539 aaPredicted RBP10.12□□□□□ -0.79
SCFD1-221ENST00000556534 NKX2-3Q8TAU0 364 aa10.12□□□□□ -0.79
SCFD1-221ENST00000556534 CABLES1Q8TDN4 633 aa10.12□□□□□ -0.79
SCFD1-221ENST00000556534 HRCP23327 699 aa10.11□□□□□ -0.79
SCFD1-221ENST00000556534 MTMR2Q13614 643 aa10.11□□□□□ -0.79
SCFD1-221ENST00000556534 IFFO2Q5TF58 517 aa10.11□□□□□ -0.79
SCFD1-221ENST00000556534 ZBTB3Q9H5J0 574 aa10.11□□□□□ -0.79
SCFD1-221ENST00000556534 C6orf229H3BNL8 230 aa10.1□□□□□ -0.79
SCFD1-221ENST00000556534 SPSB2Q99619 263 aa10.1□□□□□ -0.79
SCFD1-221ENST00000556534 MSS51Q4VC12 460 aa10.09□□□□□ -0.79
SCFD1-221ENST00000556534 RETREG3Q86VR2 466 aa10.09□□□□□ -0.79
SCFD1-221ENST00000556534 USB1Q9BQ65 265 aaKnown RBP10.09□□□□□ -0.79
SCFD1-221ENST00000556534 PLA2G2EQ9NZK7 142 aa10.09□□□□□ -0.79
SCFD1-221ENST00000556534 PPP2R2DQ66LE6 453 aa10.08□□□□□ -0.8
SCFD1-221ENST00000556534 FAM160A2Q8N612 972 aaPredicted RBP10.08□□□□□ -0.8
SCFD1-221ENST00000556534 PRDM9Q9NQV7 894 aa10.08□□□□□ -0.8
SCFD1-221ENST00000556534 SPDYE5A6NIY4 337 aa10.07□□□□□ -0.8
SCFD1-221ENST00000556534 RTL5Q5HYW3 569 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-221ENST00000556534 CFAP99D6REC4 459 aa10.06□□□□□ -0.8
SCFD1-221ENST00000556534 PRR7Q8TB68 274 aa10.05□□□□□ -0.8
SCFD1-221ENST00000556534 NUTM2BA6NNL0 878 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-221ENST00000556534 NUTM2EB1AL46 878 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-221ENST00000556534 S1PR4O95977 384 aa10.04□□□□□ -0.8
SCFD1-221ENST00000556534 NUTM2DQ5VT03 806 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-221ENST00000556534 NUTM2AQ8IVF1 878 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-221ENST00000556534 SLC6A16Q9GZN6 736 aa10.04□□□□□ -0.8
SCFD1-221ENST00000556534 ATP1B4Q9UN42 357 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-221ENST00000556534 DXOO77932 396 aaKnown RBP10.03□□□□□ -0.8
SCFD1-221ENST00000556534 RFC5P40937 340 aa10.03□□□□□ -0.8
SCFD1-221ENST00000556534 MMP16P51512 607 aa10.03□□□□□ -0.8
SCFD1-221ENST00000556534 JUNDP17535 347 aa10.02□□□□□ -0.81
SCFD1-221ENST00000556534 A0A0G2JS52 829 aa10.01□□□□□ -0.81
SCFD1-221ENST00000556534 DESI1Q6ICB0 168 aa10.01□□□□□ -0.81
SCFD1-221ENST00000556534 PPP1R18Q6NYC8 613 aa9.99□□□□□ -0.81
SCFD1-221ENST00000556534 RNF223E7ERA6 249 aa9.98□□□□□ -0.81
SCFD1-221ENST00000556534 HELBQ8NG08 1087 aaPredicted RBP9.98□□□□□ -0.81
SCFD1-221ENST00000556534 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.97□□□□□ -0.81
SCFD1-221ENST00000556534 PER1O15534 1290 aaPredicted RBP9.96□□□□□ -0.82
SCFD1-221ENST00000556534 GGCXP38435 758 aa9.96□□□□□ -0.82
SCFD1-221ENST00000556534 PTPRNQ16849 979 aa9.96□□□□□ -0.82
SCFD1-221ENST00000556534 TSC1Q92574 1164 aa9.96□□□□□ -0.82
SCFD1-221ENST00000556534 PPEF1O14829 653 aaPredicted RBP9.95□□□□□ -0.82
SCFD1-221ENST00000556534 AP1G2O75843 785 aa9.95□□□□□ -0.82
SCFD1-221ENST00000556534 USP17L8P0C7I0 530 aa9.95□□□□□ -0.82
SCFD1-221ENST00000556534 LYPD8Q6UX82 237 aa9.95□□□□□ -0.82
SCFD1-221ENST00000556534 ANKLE1Q8NAG6 615 aa9.95□□□□□ -0.82
SCFD1-221ENST00000556534 FCF1Q9Y324 198 aaKnown RBP9.95□□□□□ -0.82
SCFD1-221ENST00000556534 CTDSPL2Q05D32 466 aa9.94□□□□□ -0.82
SCFD1-221ENST00000556534 TMEM259Q4ZIN3 620 aa9.94□□□□□ -0.82
SCFD1-221ENST00000556534 PLA2G2CQ5R387 149 aa9.93□□□□□ -0.82
SCFD1-221ENST00000556534 NUDT12Q9BQG2 462 aa9.93□□□□□ -0.82
SCFD1-221ENST00000556534 F12P00748 615 aaPredicted RBP9.92□□□□□ -0.82
SCFD1-221ENST00000556534 CCNYL3P0C7X3 344 aa9.92□□□□□ -0.82
SCFD1-221ENST00000556534 BANK1Q8NDB2 785 aa9.91□□□□□ -0.82
SCFD1-221ENST00000556534 LRRN4Q8WUT4 740 aa9.91□□□□□ -0.82
SCFD1-221ENST00000556534 EMID1Q96A84 441 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-221ENST00000556534 HMX1Q9NP08 348 aaPredicted RBP9.9□□□□□ -0.82
SCFD1-221ENST00000556534 MAP10Q9P2G4 905 aa9.89□□□□□ -0.83
SCFD1-221ENST00000556534 CCDC24Q8N4L8 307 aa9.88□□□□□ -0.83
SCFD1-221ENST00000556534 MTMR14Q8NCE2 650 aa9.88□□□□□ -0.83
SCFD1-221ENST00000556534 EVA1BQ9NVM1 165 aa9.88□□□□□ -0.83
SCFD1-221ENST00000556534 SOCS7O14512 581 aa9.87□□□□□ -0.83
SCFD1-221ENST00000556534 MCM6Q14566 821 aa9.87□□□□□ -0.83
SCFD1-221ENST00000556534 SNRKQ9NRH2 765 aa9.87□□□□□ -0.83
SCFD1-221ENST00000556534 KCNH2Q12809 1159 aa9.86□□□□□ -0.83
SCFD1-221ENST00000556534 PTCRAQ6ISU1 281 aaPredicted RBP9.86□□□□□ -0.83
SCFD1-221ENST00000556534 GJD4Q96KN9 370 aaPredicted RBP9.85□□□□□ -0.83
SCFD1-221ENST00000556534 TRIM34Q9BYJ4 488 aa9.85□□□□□ -0.83
SCFD1-221ENST00000556534 CTHP32929 405 aa9.84□□□□□ -0.83
SCFD1-221ENST00000556534 LIAT1Q6ZQX7 453 aa9.84□□□□□ -0.83
SCFD1-221ENST00000556534 NR6A1Q15406 480 aa9.83□□□□□ -0.84
SCFD1-221ENST00000556534 EPS8L1Q8TE68 723 aa9.83□□□□□ -0.84
SCFD1-221ENST00000556534 UNC93B1Q9H1C4 597 aa9.83□□□□□ -0.84
SCFD1-221ENST00000556534 RPIAP49247 311 aa9.82□□□□□ -0.84
SCFD1-221ENST00000556534 TRIM32Q13049 653 aa9.81□□□□□ -0.84
SCFD1-221ENST00000556534 GPR37L1O60883 481 aa9.8□□□□□ -0.84
SCFD1-221ENST00000556534 SLC19A1P41440 591 aa9.8□□□□□ -0.84
SCFD1-221ENST00000556534 FLIIQ13045 1269 aa9.8□□□□□ -0.84
SCFD1-221ENST00000556534 PRKD2Q9BZL6 878 aa9.8□□□□□ -0.84
SCFD1-221ENST00000556534 GTF3C3Q9Y5Q9 886 aa9.8□□□□□ -0.84
SCFD1-221ENST00000556534 V9GY48 417 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-221ENST00000556534 RGS20O76081 388 aa9.79□□□□□ -0.84
SCFD1-221ENST00000556534 ZBTB24O43167 697 aaPredicted RBP9.78□□□□□ -0.84
SCFD1-221ENST00000556534 APBB1O00213 710 aa9.77□□□□□ -0.85
SCFD1-221ENST00000556534 SPRYD7Q5W111 196 aa9.77□□□□□ -0.85
SCFD1-221ENST00000556534 FKBPLQ9UIM3 349 aa9.77□□□□□ -0.85
SCFD1-221ENST00000556534 LINC01559Q495D7 138 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms