RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 USP46P62068 366 aa10.13□□□□□ -0.79
SCFD1-219ENST00000556413 FOXC1Q12948 553 aa10.13□□□□□ -0.79
SCFD1-219ENST00000556413 FAM217BQ9NTX9 383 aaPredicted RBP10.13□□□□□ -0.79
SCFD1-219ENST00000556413 HOXA2O43364 376 aa10.12□□□□□ -0.79
SCFD1-219ENST00000556413 ZNF787Q6DD87 383 aa10.12□□□□□ -0.79
SCFD1-219ENST00000556413 MMP16P51512 607 aa10.11□□□□□ -0.79
SCFD1-219ENST00000556413 USB1Q9BQ65 265 aaKnown RBP10.11□□□□□ -0.79
SCFD1-219ENST00000556413 REPIN1Q9BWE0 567 aaKnown RBP10.1□□□□□ -0.79
SCFD1-219ENST00000556413 GUCA2AQ02747 115 aa10.09□□□□□ -0.79
SCFD1-219ENST00000556413 KRI1Q8N9T8 703 aaKnown RBP10.09□□□□□ -0.79
SCFD1-219ENST00000556413 ZBTB24O43167 697 aaPredicted RBP10.08□□□□□ -0.8
SCFD1-219ENST00000556413 ZMYND10O75800 440 aa10.08□□□□□ -0.8
SCFD1-219ENST00000556413 BARGINQ6ZT62 677 aa10.08□□□□□ -0.8
SCFD1-219ENST00000556413 DXOO77932 396 aaKnown RBP10.07□□□□□ -0.8
SCFD1-219ENST00000556413 TOR4AQ9NXH8 423 aa10.07□□□□□ -0.8
SCFD1-219ENST00000556413 NUTM1Q86Y26 1132 aa10.06□□□□□ -0.8
SCFD1-219ENST00000556413 ZC3H15Q8WU90 426 aaKnown RBP10.06□□□□□ -0.8
SCFD1-219ENST00000556413 SYMPKQ92797 1274 aaKnown RBP10.05□□□□□ -0.8
SCFD1-219ENST00000556413 SSTR3P32745 418 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-219ENST00000556413 TRIM32Q13049 653 aa10.04□□□□□ -0.8
SCFD1-219ENST00000556413 CYP4X1Q8N118 509 aa10.04□□□□□ -0.8
SCFD1-219ENST00000556413 ST8SIA5O15466 376 aa10.03□□□□□ -0.8
SCFD1-219ENST00000556413 AAASQ9NRG9 546 aa10.03□□□□□ -0.8
SCFD1-219ENST00000556413 POTECB2RU33 542 aa10.02□□□□□ -0.81
SCFD1-219ENST00000556413 AMHR2Q16671 573 aa10.02□□□□□ -0.81
SCFD1-219ENST00000556413 WNT7AO00755 349 aa10.01□□□□□ -0.81
SCFD1-219ENST00000556413 TTLL12Q14166 644 aaPredicted RBP10.01□□□□□ -0.81
SCFD1-219ENST00000556413 CCDC24Q8N4L8 307 aa10.01□□□□□ -0.81
SCFD1-219ENST00000556413 PCDHGC3Q9UN70 934 aa10.01□□□□□ -0.81
SCFD1-219ENST00000556413 AVPP01185 164 aa10□□□□□ -0.81
SCFD1-219ENST00000556413 FDX1P10109 184 aa10□□□□□ -0.81
SCFD1-219ENST00000556413 JUNDP17535 347 aa10□□□□□ -0.81
SCFD1-219ENST00000556413 RETREG3Q86VR2 466 aa10□□□□□ -0.81
SCFD1-219ENST00000556413 SPIRE2Q8WWL2 714 aa10□□□□□ -0.81
SCFD1-219ENST00000556413 TTC24A2A3L6 582 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-219ENST00000556413 ZNF775Q96BV0 537 aaPredicted RBP9.99□□□□□ -0.81
SCFD1-219ENST00000556413 GIGYF2Q6Y7W6 1299 aaKnown RBP9.98□□□□□ -0.81
SCFD1-219ENST00000556413 CRIPAKQ8N1N5 446 aa9.98□□□□□ -0.81
SCFD1-219ENST00000556413 SNIP1Q8TAD8 396 aaKnown RBP9.97□□□□□ -0.81
SCFD1-219ENST00000556413 MRGPRX2Q96LB1 330 aa9.97□□□□□ -0.81
SCFD1-219ENST00000556413 MOXD2PA6NHM9 499 aa9.96□□□□□ -0.82
SCFD1-219ENST00000556413 C6orf229H3BNL8 230 aa9.96□□□□□ -0.82
SCFD1-219ENST00000556413 NDUFV2P19404 249 aa9.96□□□□□ -0.82
SCFD1-219ENST00000556413 SKOR1P84550 965 aa9.96□□□□□ -0.82
SCFD1-219ENST00000556413 DACH1Q9UI36 760 aa9.96□□□□□ -0.82
SCFD1-219ENST00000556413 AXIN1O15169 862 aa9.94□□□□□ -0.82
SCFD1-219ENST00000556413 SMPD1P17405 629 aa9.94□□□□□ -0.82
SCFD1-219ENST00000556413 CTC1Q2NKJ3 1217 aa9.94□□□□□ -0.82
SCFD1-219ENST00000556413 NUDT12Q9BQG2 462 aa9.94□□□□□ -0.82
SCFD1-219ENST00000556413 BEGAINQ9BUH8 593 aa9.94□□□□□ -0.82
SCFD1-219ENST00000556413 J3QL48 77 aa9.93□□□□□ -0.82
SCFD1-219ENST00000556413 SMCPP49901 116 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-219ENST00000556413 RC3H1Q5TC82 1133 aaKnown RBP9.93□□□□□ -0.82
SCFD1-219ENST00000556413 PTCRAQ6ISU1 281 aaPredicted RBP9.93□□□□□ -0.82
SCFD1-219ENST00000556413 TRIM66O15016 1216 aa9.92□□□□□ -0.82
SCFD1-219ENST00000556413 WNT7BP56706 349 aa9.92□□□□□ -0.82
SCFD1-219ENST00000556413 PARP9Q8IXQ6 854 aa9.92□□□□□ -0.82
SCFD1-219ENST00000556413 MS4A1P11836 297 aa9.9□□□□□ -0.82
SCFD1-219ENST00000556413 TBC1D2Q9BYX2 928 aa9.9□□□□□ -0.82
SCFD1-219ENST00000556413 AK7Q96M32 723 aa9.89□□□□□ -0.83
SCFD1-219ENST00000556413 GMPR2Q9P2T1 348 aaKnown RBP9.89□□□□□ -0.83
SCFD1-219ENST00000556413 CCNYL3P0C7X3 344 aa9.88□□□□□ -0.83
SCFD1-219ENST00000556413 MTMR2Q13614 643 aa9.88□□□□□ -0.83
SCFD1-219ENST00000556413 PTPRNQ16849 979 aa9.88□□□□□ -0.83
SCFD1-219ENST00000556413 PRR7Q8TB68 274 aa9.88□□□□□ -0.83
SCFD1-219ENST00000556413 SPDYE5A6NIY4 337 aa9.86□□□□□ -0.83
SCFD1-219ENST00000556413 GJA5P36382 358 aa9.86□□□□□ -0.83
SCFD1-219ENST00000556413 RSBN1LQ6PCB5 846 aaPredicted RBP9.86□□□□□ -0.83
SCFD1-219ENST00000556413 HPS1Q92902 700 aa9.86□□□□□ -0.83
SCFD1-219ENST00000556413 EVA1BQ9NVM1 165 aa9.86□□□□□ -0.83
SCFD1-219ENST00000556413 SH3BP2P78314 561 aa9.85□□□□□ -0.83
SCFD1-219ENST00000556413 DIXDC1Q155Q3 683 aa9.85□□□□□ -0.83
SCFD1-219ENST00000556413 DESI1Q6ICB0 168 aa9.85□□□□□ -0.83
SCFD1-219ENST00000556413 PCDHB15Q9Y5E8 787 aa9.85□□□□□ -0.83
SCFD1-219ENST00000556413 SIAH2O43255 324 aa9.84□□□□□ -0.83
SCFD1-219ENST00000556413 UNC93B1Q9H1C4 597 aa9.84□□□□□ -0.83
SCFD1-219ENST00000556413 C11orf95C9JLR9 678 aaPredicted RBP9.83□□□□□ -0.84
SCFD1-219ENST00000556413 SPTLC1O15269 473 aa9.83□□□□□ -0.84
SCFD1-219ENST00000556413 ALDH1A1P00352 501 aa9.83□□□□□ -0.84
SCFD1-219ENST00000556413 KCNH2Q12809 1159 aa9.83□□□□□ -0.84
SCFD1-219ENST00000556413 EHBP1Q8NDI1 1231 aa9.83□□□□□ -0.84
SCFD1-219ENST00000556413 ATP13A2Q9NQ11 1180 aa9.83□□□□□ -0.84
SCFD1-219ENST00000556413 PDE4DQ08499 809 aa9.82□□□□□ -0.84
SCFD1-219ENST00000556413 CFAP99D6REC4 459 aa9.81□□□□□ -0.84
SCFD1-219ENST00000556413 HRCP23327 699 aa9.81□□□□□ -0.84
SCFD1-219ENST00000556413 BAP1Q92560 729 aa9.81□□□□□ -0.84
SCFD1-219ENST00000556413 LINC01559Q495D7 138 aa9.8□□□□□ -0.84
SCFD1-219ENST00000556413 RIC3Q7Z5B4 369 aa9.8□□□□□ -0.84
SCFD1-219ENST00000556413 SLC24A3Q9HC58 644 aa9.8□□□□□ -0.84
SCFD1-219ENST00000556413 LYPD8Q6UX82 237 aa9.79□□□□□ -0.84
SCFD1-219ENST00000556413 ZBTB3Q9H5J0 574 aa9.79□□□□□ -0.84
SCFD1-219ENST00000556413 LCE2AQ5TA79 106 aaPredicted RBP9.78□□□□□ -0.84
SCFD1-219ENST00000556413 TREML4Q6UXN2 200 aa9.78□□□□□ -0.84
SCFD1-219ENST00000556413 CABLES1Q8TDN4 633 aa9.78□□□□□ -0.84
SCFD1-219ENST00000556413 PRPF38BQ5VTL8 546 aaKnown RBP9.77□□□□□ -0.85
SCFD1-219ENST00000556413 ZNF511Q8NB15 262 aa9.77□□□□□ -0.85
SCFD1-219ENST00000556413 SNRPBP14678 240 aaKnown RBP9.76□□□□□ -0.85
SCFD1-219ENST00000556413 CSPP1Q1MSJ5 1256 aa9.76□□□□□ -0.85
SCFD1-219ENST00000556413 MYSM1Q5VVJ2 828 aa9.76□□□□□ -0.85
SCFD1-219ENST00000556413 TRIM47Q96LD4 638 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms