RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 COG3Q96JB2 828 aa18.48■□□□□ 0.55
ARHGEF40-207ENST00000556399 CTTNBP2Q8WZ74 1663 aa18.47■□□□□ 0.55
ARHGEF40-207ENST00000556399 LMOD2Q6P5Q4 547 aa18.47■□□□□ 0.55
ARHGEF40-207ENST00000556399 CSPP1Q1MSJ5 1256 aa18.47■□□□□ 0.55
ARHGEF40-207ENST00000556399 GRPEL1Q9HAV7 217 aa18.46■□□□□ 0.55
ARHGEF40-207ENST00000556399 ATF7IPQ6VMQ6 1270 aa18.46■□□□□ 0.55
ARHGEF40-207ENST00000556399 FAM13BQ9NYF5 915 aa18.46■□□□□ 0.55
ARHGEF40-207ENST00000556399 PARD3Q8TEW0 1356 aa18.46■□□□□ 0.55
ARHGEF40-207ENST00000556399 PRKCSHP14314 528 aaPredicted RBP18.46■□□□□ 0.55
ARHGEF40-207ENST00000556399 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
ARHGEF40-207ENST00000556399 RARSP54136 660 aaKnown RBP18.45■□□□□ 0.54
ARHGEF40-207ENST00000556399 CT47B1P0C2W7 299 aaPredicted RBP18.45■□□□□ 0.54
ARHGEF40-207ENST00000556399 C1orf115Q9H7X2 142 aa18.45■□□□□ 0.54
ARHGEF40-207ENST00000556399 IGHDP01880 384 aa18.44■□□□□ 0.54
ARHGEF40-207ENST00000556399 RNF123Q5XPI4 1314 aa18.43■□□□□ 0.54
ARHGEF40-207ENST00000556399 ISY1Q9ULR0 285 aaKnown RBP18.42■□□□□ 0.54
ARHGEF40-207ENST00000556399 GPATCH8Q9UKJ3 1502 aaKnown RBP18.42■□□□□ 0.54
ARHGEF40-207ENST00000556399 CAVIN1Q6NZI2 390 aaKnown RBP18.42■□□□□ 0.54
ARHGEF40-207ENST00000556399 GCC1Q96CN9 775 aa18.42■□□□□ 0.54
ARHGEF40-207ENST00000556399 TBC1D2Q9BYX2 928 aa18.42■□□□□ 0.54
ARHGEF40-207ENST00000556399 NUTM2FA1L443 756 aa18.42■□□□□ 0.54
ARHGEF40-207ENST00000556399 C8orf34Q49A92 452 aa18.41■□□□□ 0.54
ARHGEF40-207ENST00000556399 GPATCH3Q96I76 525 aa18.41■□□□□ 0.54
ARHGEF40-207ENST00000556399 ANO2Q9NQ90 1003 aa18.41■□□□□ 0.54
ARHGEF40-207ENST00000556399 PRKAR2BP31323 418 aa18.4■□□□□ 0.54
ARHGEF40-207ENST00000556399 NSD3Q9BZ95 1437 aa18.4■□□□□ 0.54
ARHGEF40-207ENST00000556399 HTATSF1O43719 755 aaKnown RBP18.4■□□□□ 0.54
ARHGEF40-207ENST00000556399 KIF14Q15058 1648 aa18.4■□□□□ 0.54
ARHGEF40-207ENST00000556399 CHD1LQ86WJ1 897 aa18.4■□□□□ 0.54
ARHGEF40-207ENST00000556399 CCDC173Q0VFZ6 552 aa18.39■□□□□ 0.54
ARHGEF40-207ENST00000556399 AMPHP49418 695 aa18.39■□□□□ 0.53
ARHGEF40-207ENST00000556399 K7ELQ4 463 aaPredicted RBP18.39■□□□□ 0.53
ARHGEF40-207ENST00000556399 R3HCC1Q9Y3T6 440 aaKnown RBP18.39■□□□□ 0.53
ARHGEF40-207ENST00000556399 ATP6V1DQ9Y5K8 247 aa18.39■□□□□ 0.53
ARHGEF40-207ENST00000556399 RABEP1Q15276 862 aa18.39■□□□□ 0.53
ARHGEF40-207ENST00000556399 ESPNB1AK53 854 aa18.38■□□□□ 0.53
ARHGEF40-207ENST00000556399 TEX14Q8IWB6 1497 aa18.37■□□□□ 0.53
ARHGEF40-207ENST00000556399 CIZ1Q9ULV3 898 aaPredicted RBP18.37■□□□□ 0.53
ARHGEF40-207ENST00000556399 CHMP4AQ9BY43 222 aa18.37■□□□□ 0.53
ARHGEF40-207ENST00000556399 TPM2P07951 284 aa18.36■□□□□ 0.53
ARHGEF40-207ENST00000556399 TMEM57Q8N5G2 664 aa18.36■□□□□ 0.53
ARHGEF40-207ENST00000556399 CDK11BP21127 795 aaKnown RBP18.36■□□□□ 0.53
ARHGEF40-207ENST00000556399 RNF214Q8ND24 703 aa18.36■□□□□ 0.53
ARHGEF40-207ENST00000556399 GRIN2AQ12879 1464 aa18.36■□□□□ 0.53
ARHGEF40-207ENST00000556399 PRPF40AO75400 957 aaKnown RBP18.35■□□□□ 0.53
ARHGEF40-207ENST00000556399 TWISTNBQ3B726 338 aaPredicted RBP18.35■□□□□ 0.53
ARHGEF40-207ENST00000556399 A0A0G2JS52 829 aa18.34■□□□□ 0.53
ARHGEF40-207ENST00000556399 PRAG1Q86YV5 1406 aa18.34■□□□□ 0.53
ARHGEF40-207ENST00000556399 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.34■□□□□ 0.53
ARHGEF40-207ENST00000556399 NGDNQ8NEJ9 315 aaKnown RBP18.34■□□□□ 0.53
ARHGEF40-207ENST00000556399 TBC1D32Q96NH3 1257 aa18.34■□□□□ 0.53
ARHGEF40-207ENST00000556399 LTV1Q96GA3 475 aaPredicted RBP18.33■□□□□ 0.53
ARHGEF40-207ENST00000556399 NUP153P49790 1475 aaKnown RBP18.33■□□□□ 0.53
ARHGEF40-207ENST00000556399 HSP90B1P14625 803 aaKnown RBP18.33■□□□□ 0.52
ARHGEF40-207ENST00000556399 TMPOP42166 694 aaKnown RBP18.33■□□□□ 0.52
ARHGEF40-207ENST00000556399 PZPP20742 1482 aa18.33■□□□□ 0.52
ARHGEF40-207ENST00000556399 AMER1Q5JTC6 1135 aaPredicted RBP18.33■□□□□ 0.52
ARHGEF40-207ENST00000556399 CCDC39Q9UFE4 941 aa18.33■□□□□ 0.52
ARHGEF40-207ENST00000556399 HDAC5Q9UQL6 1122 aa18.33■□□□□ 0.52
ARHGEF40-207ENST00000556399 SSH1Q8WYL5 1049 aa18.32■□□□□ 0.52
ARHGEF40-207ENST00000556399 NECTIN2Q92692 538 aa18.32■□□□□ 0.52
ARHGEF40-207ENST00000556399 SCAF11Q99590 1463 aaKnown RBP18.32■□□□□ 0.52
ARHGEF40-207ENST00000556399 PER1O15534 1290 aaPredicted RBP18.32■□□□□ 0.52
ARHGEF40-207ENST00000556399 FKBP5Q13451 457 aaPredicted RBP18.32■□□□□ 0.52
ARHGEF40-207ENST00000556399 PLEKHH1Q9ULM0 1364 aa18.31■□□□□ 0.52
ARHGEF40-207ENST00000556399 NEK4P51957 841 aa18.31■□□□□ 0.52
ARHGEF40-207ENST00000556399 DIAPH3Q9NSV4 1193 aa18.31■□□□□ 0.52
ARHGEF40-207ENST00000556399 TESK2Q96S53 571 aa18.31■□□□□ 0.52
ARHGEF40-207ENST00000556399 RAPGEF6Q8TEU7 1601 aa18.31■□□□□ 0.52
ARHGEF40-207ENST00000556399 MBD3O95983 291 aa18.3■□□□□ 0.52
ARHGEF40-207ENST00000556399 DNAJC5BQ9UF47 199 aa18.29■□□□□ 0.52
ARHGEF40-207ENST00000556399 GPRASP1Q5JY77 1395 aa18.29■□□□□ 0.52
ARHGEF40-207ENST00000556399 PRAM1Q96QH2 718 aa18.29■□□□□ 0.52
ARHGEF40-207ENST00000556399 TSPYL4Q9UJ04 414 aa18.29■□□□□ 0.52
ARHGEF40-207ENST00000556399 SPATA31E1Q6ZUB1 1445 aa18.29■□□□□ 0.52
ARHGEF40-207ENST00000556399 WDR62O43379 1518 aa18.28■□□□□ 0.52
ARHGEF40-207ENST00000556399 CWC22Q9HCG8 908 aaKnown RBP18.28■□□□□ 0.52
ARHGEF40-207ENST00000556399 ARHGEF12Q9NZN5 1544 aa18.27■□□□□ 0.52
ARHGEF40-207ENST00000556399 PCDHB15Q9Y5E8 787 aa18.27■□□□□ 0.52
ARHGEF40-207ENST00000556399 SMC3Q9UQE7 1217 aa18.27■□□□□ 0.52
ARHGEF40-207ENST00000556399 CHMP3Q9Y3E7 222 aa18.27■□□□□ 0.52
ARHGEF40-207ENST00000556399 ITSN2Q9NZM3 1697 aa18.27■□□□□ 0.51
ARHGEF40-207ENST00000556399 TRIM27P14373 513 aa18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 RUFY2Q8WXA3 655 aa18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 ADGRF5Q8IZF2 1346 aa18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 GNL2Q13823 731 aaKnown RBP18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 DNMT1P26358 1616 aaKnown RBP18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 RBM10P98175 930 aaKnown RBP18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 UHRF1BP1Q6BDS2 1440 aa18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 ZNF608Q9ULD9 1512 aaPredicted RBP18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 MAP7D2Q96T17 732 aa18.26■□□□□ 0.51
ARHGEF40-207ENST00000556399 TNPO1Q92973 898 aaKnown RBP18.25■□□□□ 0.51
ARHGEF40-207ENST00000556399 RRP9O43818 475 aaKnown RBP18.25■□□□□ 0.51
ARHGEF40-207ENST00000556399 ZKSCAN1P17029 563 aaPredicted RBP18.25■□□□□ 0.51
ARHGEF40-207ENST00000556399 ASXL1Q8IXJ9 1541 aa18.25■□□□□ 0.51
ARHGEF40-207ENST00000556399 VPS37CA5D8V6 355 aaPredicted RBP18.25■□□□□ 0.51
ARHGEF40-207ENST00000556399 ZNF428Q96B54 188 aa18.25■□□□□ 0.51
ARHGEF40-207ENST00000556399 MCM2P49736 904 aa18.24■□□□□ 0.51
ARHGEF40-207ENST00000556399 CABP1Q9NZU7 370 aa18.24■□□□□ 0.51
ARHGEF40-207ENST00000556399 EIF2S2P20042 333 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms