RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 DCCP43146 1447 aa16.45■□□□□ 0.22
SYNE2-221ENST00000556342 PRKAR2AP13861 404 aaKnown RBP16.44■□□□□ 0.22
SYNE2-221ENST00000556342 SHPRHQ149N8 1683 aa16.43■□□□□ 0.22
SYNE2-221ENST00000556342 ITGAEP38570 1179 aa16.41■□□□□ 0.22
SYNE2-221ENST00000556342 XRN1Q8IZH2 1706 aaKnown RBP16.4■□□□□ 0.22
SYNE2-221ENST00000556342 SETBP1Q9Y6X0 1596 aa16.4■□□□□ 0.22
SYNE2-221ENST00000556342 TRIM52Q96A61 297 aa16.4■□□□□ 0.22
SYNE2-221ENST00000556342 NRXN3Q9Y4C0 1643 aa16.4■□□□□ 0.22
SYNE2-221ENST00000556342 ASXL1Q8IXJ9 1541 aa16.4■□□□□ 0.22
SYNE2-221ENST00000556342 MST1RQ04912 1400 aa16.39■□□□□ 0.21
SYNE2-221ENST00000556342 UPF1Q92900 1129 aaKnown RBP eCLIP16.39■□□□□ 0.21
SYNE2-221ENST00000556342 METP08581 1390 aa16.38■□□□□ 0.21
SYNE2-221ENST00000556342 SETD5Q9C0A6 1442 aa16.38■□□□□ 0.21
SYNE2-221ENST00000556342 NUTM2BA6NNL0 878 aaPredicted RBP16.38■□□□□ 0.21
SYNE2-221ENST00000556342 NUTM2EB1AL46 878 aaPredicted RBP16.38■□□□□ 0.21
SYNE2-221ENST00000556342 NUTM2AQ8IVF1 878 aaPredicted RBP16.38■□□□□ 0.21
SYNE2-221ENST00000556342 RXRBP28702 533 aa16.37■□□□□ 0.21
SYNE2-221ENST00000556342 ZNF326Q5BKZ1 582 aaKnown RBP16.37■□□□□ 0.21
SYNE2-221ENST00000556342 ADGRL3Q9HAR2 1447 aa16.36■□□□□ 0.21
SYNE2-221ENST00000556342 SPHKAPQ2M3C7 1700 aa16.35■□□□□ 0.21
SYNE2-221ENST00000556342 CDK12Q9NYV4 1490 aaPredicted RBP16.35■□□□□ 0.21
SYNE2-221ENST00000556342 LRRC59Q96AG4 307 aaKnown RBP16.34■□□□□ 0.21
SYNE2-221ENST00000556342 AFF2P51816 1311 aa16.34■□□□□ 0.21
SYNE2-221ENST00000556342 NHSL1Q5SYE7 1610 aa16.34■□□□□ 0.21
SYNE2-221ENST00000556342 CHADLQ6NUI6 762 aa16.33■□□□□ 0.2
SYNE2-221ENST00000556342 NEXMIFQ5QGS0 1516 aa16.32■□□□□ 0.2
SYNE2-221ENST00000556342 PNPLA6Q8IY17 1366 aa16.31■□□□□ 0.2
SYNE2-221ENST00000556342 DDX17Q92841 729 aaKnown RBP16.31■□□□□ 0.2
SYNE2-221ENST00000556342 CLTCL1P53675 1640 aa16.3■□□□□ 0.2
SYNE2-221ENST00000556342 C8orf37Q96NL8 207 aa16.3■□□□□ 0.2
SYNE2-221ENST00000556342 PPARGC1BQ86YN6 1023 aaKnown RBP16.29■□□□□ 0.2
SYNE2-221ENST00000556342 NALCNQ8IZF0 1738 aa16.28■□□□□ 0.2
SYNE2-221ENST00000556342 C1orf167Q5SNV9 1468 aa16.28■□□□□ 0.2
SYNE2-221ENST00000556342 RGS12O14924 1447 aa16.28■□□□□ 0.2
SYNE2-221ENST00000556342 PTCH1Q13635 1447 aa16.28■□□□□ 0.2
SYNE2-221ENST00000556342 RBM6P78332 1123 aaKnown RBP16.26■□□□□ 0.19
SYNE2-221ENST00000556342 QTRT2Q9H974 415 aaKnown RBP16.26■□□□□ 0.19
SYNE2-221ENST00000556342 CREBZFQ9NS37 354 aa16.25■□□□□ 0.19
SYNE2-221ENST00000556342 ROBO2Q9HCK4 1378 aa16.25■□□□□ 0.19
SYNE2-221ENST00000556342 VGFO15240 615 aaPredicted RBP16.24■□□□□ 0.19
SYNE2-221ENST00000556342 NAIPQ13075 1403 aa16.24■□□□□ 0.19
SYNE2-221ENST00000556342 PRAG1Q86YV5 1406 aa16.24■□□□□ 0.19
SYNE2-221ENST00000556342 SOS2Q07890 1332 aaPredicted RBP16.23■□□□□ 0.19
SYNE2-221ENST00000556342 ADAMTS2O95450 1211 aa16.23■□□□□ 0.19
SYNE2-221ENST00000556342 NGLY1Q96IV0 654 aa16.23■□□□□ 0.19
SYNE2-221ENST00000556342 ORAI2Q96SN7 254 aa16.23■□□□□ 0.19
SYNE2-221ENST00000556342 LAMC1P11047 1609 aa16.23■□□□□ 0.19
SYNE2-221ENST00000556342 RRBP1Q9P2E9 1410 aaKnown RBP16.21■□□□□ 0.19
SYNE2-221ENST00000556342 KIF1BO60333 1816 aa16.21■□□□□ 0.19
SYNE2-221ENST00000556342 RPGRIP1LQ68CZ1 1315 aa16.19■□□□□ 0.18
SYNE2-221ENST00000556342 HFM1A2PYH4 1435 aa16.19■□□□□ 0.18
SYNE2-221ENST00000556342 SRCAPQ6ZRS2 3230 aa16.19■□□□□ 0.18
SYNE2-221ENST00000556342 HAX1O00165 279 aa16.18■□□□□ 0.18
SYNE2-221ENST00000556342 USP21Q9UK80 565 aa16.18■□□□□ 0.18
SYNE2-221ENST00000556342 FARP1Q9Y4F1 1045 aaPredicted RBP16.18■□□□□ 0.18
SYNE2-221ENST00000556342 FNBP4Q8N3X1 1017 aaPredicted RBP16.16■□□□□ 0.18
SYNE2-221ENST00000556342 TRPC5Q9UL62 973 aaPredicted RBP16.16■□□□□ 0.18
SYNE2-221ENST00000556342 ATAD2Q6PL18 1390 aa16.15■□□□□ 0.18
SYNE2-221ENST00000556342 MYOM2P54296 1465 aa16.15■□□□□ 0.18
SYNE2-221ENST00000556342 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
SYNE2-221ENST00000556342 ATRNO75882 1429 aa16.14■□□□□ 0.17
SYNE2-221ENST00000556342 CDC42BPGQ6DT37 1551 aa16.13■□□□□ 0.17
SYNE2-221ENST00000556342 COL22A1Q8NFW1 1626 aaPredicted RBP16.13■□□□□ 0.17
SYNE2-221ENST00000556342 ESCO1Q5FWF5 840 aa16.13■□□□□ 0.17
SYNE2-221ENST00000556342 PPLO60437 1756 aa16.12■□□□□ 0.17
SYNE2-221ENST00000556342 PXDNQ92626 1479 aa16.11■□□□□ 0.17
SYNE2-221ENST00000556342 C19orf67A6NJJ6 358 aa16.11■□□□□ 0.17
SYNE2-221ENST00000556342 ADGRF5Q8IZF2 1346 aa16.11■□□□□ 0.17
SYNE2-221ENST00000556342 FOXO3O43524 673 aa16.1■□□□□ 0.17
SYNE2-221ENST00000556342 EP400Q96L91 3159 aa16.1■□□□□ 0.17
SYNE2-221ENST00000556342 XPCQ01831 940 aaPredicted RBP16.09■□□□□ 0.17
SYNE2-221ENST00000556342 FBXO3Q9UK99 471 aa16.09■□□□□ 0.17
SYNE2-221ENST00000556342 TECPR2O15040 1411 aa16.09■□□□□ 0.17
SYNE2-221ENST00000556342 BCL9LQ86UU0 1499 aa16.09■□□□□ 0.17
SYNE2-221ENST00000556342 STK26Q9P289 416 aa16.08■□□□□ 0.16
SYNE2-221ENST00000556342 LRPPRCP42704 1394 aaKnown RBP16.08■□□□□ 0.16
SYNE2-221ENST00000556342 WAPLQ7Z5K2 1190 aa16.07■□□□□ 0.16
SYNE2-221ENST00000556342 CCDC144AA2RUR9 1427 aa16.07■□□□□ 0.16
SYNE2-221ENST00000556342 SPATA31E1Q6ZUB1 1445 aa16.06■□□□□ 0.16
SYNE2-221ENST00000556342 NUTM2FA1L443 756 aa16.06■□□□□ 0.16
SYNE2-221ENST00000556342 ABCC11Q96J66 1382 aa16.05■□□□□ 0.16
SYNE2-221ENST00000556342 ANKRD30BQ9BXX2 1392 aa16.05■□□□□ 0.16
SYNE2-221ENST00000556342 MNX1P50219 401 aaPredicted RBP16.05■□□□□ 0.16
SYNE2-221ENST00000556342 RGL3Q3MIN7 710 aa16.05■□□□□ 0.16
SYNE2-221ENST00000556342 GJD4Q96KN9 370 aaPredicted RBP16.05■□□□□ 0.16
SYNE2-221ENST00000556342 PLEKHH1Q9ULM0 1364 aa16.04■□□□□ 0.16
SYNE2-221ENST00000556342 TMEM132EQ6IEE7 984 aa16.03■□□□□ 0.16
SYNE2-221ENST00000556342 CCDC125Q86Z20 511 aa16.03■□□□□ 0.16
SYNE2-221ENST00000556342 ZRANB1Q9UGI0 708 aa16.03■□□□□ 0.16
SYNE2-221ENST00000556342 PIK3C2GO75747 1445 aa16.02■□□□□ 0.16
SYNE2-221ENST00000556342 SPATA31A3Q5VYP0 1347 aa16.02■□□□□ 0.16
SYNE2-221ENST00000556342 SP7Q8TDD2 431 aaPredicted RBP16.02■□□□□ 0.16
SYNE2-221ENST00000556342 EVX2Q03828 476 aa16.01■□□□□ 0.15
SYNE2-221ENST00000556342 UNC5CLQ8IV45 518 aa16.01■□□□□ 0.15
SYNE2-221ENST00000556342 MIER1Q8N108 512 aa16.01■□□□□ 0.15
SYNE2-221ENST00000556342 KNDC1Q76NI1 1749 aa16.01■□□□□ 0.15
SYNE2-221ENST00000556342 MARF1Q9Y4F3 1742 aaKnown RBP16.01■□□□□ 0.15
SYNE2-221ENST00000556342 YTHDC2Q9H6S0 1430 aaKnown RBP16.01■□□□□ 0.15
SYNE2-221ENST00000556342 SLIT2O94813 1529 aa16■□□□□ 0.15
SYNE2-221ENST00000556342 PLEKHG5O94827 1062 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms