RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SMCPP49901 116 aaPredicted RBP10.44□□□□□ -0.74
SCFD1-218ENST00000556256 GRIPAP1Q4V328 841 aa10.42□□□□□ -0.74
SCFD1-218ENST00000556256 WNT7AO00755 349 aa10.41□□□□□ -0.74
SCFD1-218ENST00000556256 WFS1O76024 890 aa10.4□□□□□ -0.74
SCFD1-218ENST00000556256 SMPD1P17405 629 aa10.4□□□□□ -0.74
SCFD1-218ENST00000556256 SNIP1Q8TAD8 396 aaKnown RBP10.4□□□□□ -0.74
SCFD1-218ENST00000556256 MMP16P51512 607 aa10.39□□□□□ -0.75
SCFD1-218ENST00000556256 TRIM32Q13049 653 aa10.39□□□□□ -0.75
SCFD1-218ENST00000556256 Q3C1V9 767 aa10.39□□□□□ -0.75
SCFD1-218ENST00000556256 GPIHBP1Q8IV16 184 aa10.38□□□□□ -0.75
SCFD1-218ENST00000556256 MRGPRX2Q96LB1 330 aa10.37□□□□□ -0.75
SCFD1-218ENST00000556256 J3QL48 77 aa10.36□□□□□ -0.75
SCFD1-218ENST00000556256 CD46P15529 392 aa10.36□□□□□ -0.75
SCFD1-218ENST00000556256 NFX1Q12986 1120 aaKnown RBP10.36□□□□□ -0.75
SCFD1-218ENST00000556256 USB1Q9BQ65 265 aaKnown RBP10.35□□□□□ -0.75
SCFD1-218ENST00000556256 ATP13A2Q9NQ11 1180 aa10.35□□□□□ -0.75
SCFD1-218ENST00000556256 KDM4AO75164 1064 aa10.34□□□□□ -0.75
SCFD1-218ENST00000556256 DXOO77932 396 aaKnown RBP10.34□□□□□ -0.75
SCFD1-218ENST00000556256 SNRPBP14678 240 aaKnown RBP10.33□□□□□ -0.76
SCFD1-218ENST00000556256 PLCB2Q00722 1185 aa10.31□□□□□ -0.76
SCFD1-218ENST00000556256 HPS1Q92902 700 aa10.31□□□□□ -0.76
SCFD1-218ENST00000556256 HLA-CQ95604 372 aa10.31□□□□□ -0.76
SCFD1-218ENST00000556256 CCDC24Q8N4L8 307 aa10.3□□□□□ -0.76
SCFD1-218ENST00000556256 WIPF1O43516 503 aa10.29□□□□□ -0.76
SCFD1-218ENST00000556256 MAP2K5Q13163 448 aa10.29□□□□□ -0.76
SCFD1-218ENST00000556256 RC3H1Q5TC82 1133 aaKnown RBP10.29□□□□□ -0.76
SCFD1-218ENST00000556256 IRF6O14896 467 aa10.28□□□□□ -0.76
SCFD1-218ENST00000556256 SKOR1P84550 965 aa10.28□□□□□ -0.76
SCFD1-218ENST00000556256 TRIM47Q96LD4 638 aa10.28□□□□□ -0.76
SCFD1-218ENST00000556256 REPIN1Q9BWE0 567 aaKnown RBP10.28□□□□□ -0.76
SCFD1-218ENST00000556256 SENP2Q9HC62 589 aa10.28□□□□□ -0.76
SCFD1-218ENST00000556256 USP46P62068 366 aa10.27□□□□□ -0.77
SCFD1-218ENST00000556256 MDM2Q00987 491 aaPredicted RBP10.27□□□□□ -0.77
SCFD1-218ENST00000556256 LCE2CQ5TA81 110 aa10.27□□□□□ -0.77
SCFD1-218ENST00000556256 TERTO14746 1132 aaKnown RBP10.26□□□□□ -0.77
SCFD1-218ENST00000556256 STK17AQ9UEE5 414 aa10.26□□□□□ -0.77
SCFD1-218ENST00000556256 HOXA2O43364 376 aa10.25□□□□□ -0.77
SCFD1-218ENST00000556256 WNT7BP56706 349 aa10.25□□□□□ -0.77
SCFD1-218ENST00000556256 INSM1Q01101 510 aaPredicted RBP10.23□□□□□ -0.77
SCFD1-218ENST00000556256 GUCA2AQ02747 115 aa10.23□□□□□ -0.77
SCFD1-218ENST00000556256 SYMPKQ92797 1274 aaKnown RBP10.23□□□□□ -0.77
SCFD1-218ENST00000556256 KIFC2Q96AC6 838 aa10.22□□□□□ -0.77
SCFD1-218ENST00000556256 MINK1Q8N4C8 1332 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-218ENST00000556256 ALDH1A1P00352 501 aa10.21□□□□□ -0.77
SCFD1-218ENST00000556256 JUNDP17535 347 aa10.21□□□□□ -0.77
SCFD1-218ENST00000556256 PTCRAQ6ISU1 281 aaPredicted RBP10.2□□□□□ -0.78
SCFD1-218ENST00000556256 KDM2AQ9Y2K7 1162 aa10.2□□□□□ -0.78
SCFD1-218ENST00000556256 SIAH2O43255 324 aa10.18□□□□□ -0.78
SCFD1-218ENST00000556256 CCDC102AQ96A19 550 aa10.17□□□□□ -0.78
SCFD1-218ENST00000556256 GPCPD1Q9NPB8 672 aa10.17□□□□□ -0.78
SCFD1-218ENST00000556256 FAM217BQ9NTX9 383 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-218ENST00000556256 RETREG3Q86VR2 466 aa10.16□□□□□ -0.78
SCFD1-218ENST00000556256 NUDT12Q9BQG2 462 aa10.16□□□□□ -0.78
SCFD1-218ENST00000556256 CLCN1P35523 988 aa10.15□□□□□ -0.78
SCFD1-218ENST00000556256 NUTM1Q86Y26 1132 aa10.15□□□□□ -0.78
SCFD1-218ENST00000556256 EHBP1Q8NDI1 1231 aa10.15□□□□□ -0.78
SCFD1-218ENST00000556256 HAP1P54257 671 aaPredicted RBP10.14□□□□□ -0.79
SCFD1-218ENST00000556256 TRIM46Q7Z4K8 759 aa10.13□□□□□ -0.79
SCFD1-218ENST00000556256 PCDHGC3Q9UN70 934 aa10.13□□□□□ -0.79
SCFD1-218ENST00000556256 TULP1O00294 542 aaPredicted RBP10.12□□□□□ -0.79
SCFD1-218ENST00000556256 CAPN5O15484 640 aaPredicted RBP10.12□□□□□ -0.79
SCFD1-218ENST00000556256 BMP1P13497 986 aa10.12□□□□□ -0.79
SCFD1-218ENST00000556256 SH3BP2P78314 561 aa10.12□□□□□ -0.79
SCFD1-218ENST00000556256 SLC16A10Q8TF71 515 aa10.12□□□□□ -0.79
SCFD1-218ENST00000556256 NXF1Q9UBU9 619 aaKnown RBP10.12□□□□□ -0.79
SCFD1-218ENST00000556256 WASF2Q9Y6W5 498 aa10.12□□□□□ -0.79
SCFD1-218ENST00000556256 FDX1P10109 184 aa10.11□□□□□ -0.79
SCFD1-218ENST00000556256 C6orf229H3BNL8 230 aa10.1□□□□□ -0.79
SCFD1-218ENST00000556256 KRI1Q8N9T8 703 aaKnown RBP10.1□□□□□ -0.79
SCFD1-218ENST00000556256 CCNYL3P0C7X3 344 aa10.09□□□□□ -0.79
SCFD1-218ENST00000556256 MS4A1P11836 297 aa10.09□□□□□ -0.79
SCFD1-218ENST00000556256 GMPRP36959 345 aa10.07□□□□□ -0.8
SCFD1-218ENST00000556256 EVA1BQ9NVM1 165 aa10.07□□□□□ -0.8
SCFD1-218ENST00000556256 SPIRE2Q8WWL2 714 aa10.06□□□□□ -0.8
SCFD1-218ENST00000556256 BAP1Q92560 729 aa10.06□□□□□ -0.8
SCFD1-218ENST00000556256 NDUFV2P19404 249 aa10.05□□□□□ -0.8
SCFD1-218ENST00000556256 SSTR3P32745 418 aaPredicted RBP10.05□□□□□ -0.8
SCFD1-218ENST00000556256 VEGFBP49765 207 aa10.05□□□□□ -0.8
SCFD1-218ENST00000556256 PTPRNQ16849 979 aa10.05□□□□□ -0.8
SCFD1-218ENST00000556256 NPAS3Q8IXF0 933 aa10.05□□□□□ -0.8
SCFD1-218ENST00000556256 UNC93B1Q9H1C4 597 aa10.05□□□□□ -0.8
SCFD1-218ENST00000556256 LORP23490 312 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-218ENST00000556256 LINC01559Q495D7 138 aa10.04□□□□□ -0.8
SCFD1-218ENST00000556256 IRF7Q92985 503 aa10.04□□□□□ -0.8
SCFD1-218ENST00000556256 ZFP42Q96MM3 310 aa10.04□□□□□ -0.8
SCFD1-218ENST00000556256 KCNH2Q12809 1159 aa10.03□□□□□ -0.8
SCFD1-218ENST00000556256 MOXD2PA6NHM9 499 aa10.02□□□□□ -0.81
SCFD1-218ENST00000556256 H3BM21 787 aa10.02□□□□□ -0.81
SCFD1-218ENST00000556256 PRR7Q8TB68 274 aa10.02□□□□□ -0.81
SCFD1-218ENST00000556256 TLL2Q9Y6L7 1015 aa10.02□□□□□ -0.81
SCFD1-218ENST00000556256 FAM181BA6NEQ2 426 aa10.01□□□□□ -0.81
SCFD1-218ENST00000556256 ZSCAN1Q8NBB4 408 aa10.01□□□□□ -0.81
SCFD1-218ENST00000556256 VARSP26640 1264 aaKnown RBP10□□□□□ -0.81
SCFD1-218ENST00000556256 ZNF511Q8NB15 262 aa10□□□□□ -0.81
SCFD1-218ENST00000556256 ERBB4Q15303 1308 aa10□□□□□ -0.81
SCFD1-218ENST00000556256 PLEKHG3A1L390 1219 aa9.99□□□□□ -0.81
SCFD1-218ENST00000556256 MPNDQ8N594 471 aa9.99□□□□□ -0.81
SCFD1-218ENST00000556256 NNTQ13423 1086 aa9.98□□□□□ -0.81
SCFD1-218ENST00000556256 DESI1Q6ICB0 168 aa9.98□□□□□ -0.81
SCFD1-218ENST00000556256 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms