RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 TUSC1Q2TAM9 212 aa10.84□□□□□ -0.67
SCFD1-211ENST00000554437 Q3C1V9 767 aa10.84□□□□□ -0.67
SCFD1-211ENST00000554437 C6orf229H3BNL8 230 aa10.83□□□□□ -0.68
SCFD1-211ENST00000554437 TJAP1Q5JTD0 557 aa10.83□□□□□ -0.68
SCFD1-211ENST00000554437 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.83□□□□□ -0.68
SCFD1-211ENST00000554437 IL21Q9HBE4 155 aa10.83□□□□□ -0.68
SCFD1-211ENST00000554437 NUTM2BA6NNL0 878 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-211ENST00000554437 NUTM2EB1AL46 878 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-211ENST00000554437 NUTM2DQ5VT03 806 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-211ENST00000554437 NUTM2AQ8IVF1 878 aaPredicted RBP10.82□□□□□ -0.68
SCFD1-211ENST00000554437 ZPR1O75312 459 aa10.81□□□□□ -0.68
SCFD1-211ENST00000554437 MTMR2Q13614 643 aa10.81□□□□□ -0.68
SCFD1-211ENST00000554437 QPCTQ16769 361 aa10.81□□□□□ -0.68
SCFD1-211ENST00000554437 PRPF38BQ5VTL8 546 aaKnown RBP10.81□□□□□ -0.68
SCFD1-211ENST00000554437 CABLES1Q8TDN4 633 aa10.81□□□□□ -0.68
SCFD1-211ENST00000554437 ZNF516Q92618 1163 aa10.81□□□□□ -0.68
SCFD1-211ENST00000554437 SYMPKQ92797 1274 aaKnown RBP10.81□□□□□ -0.68
SCFD1-211ENST00000554437 ZBTB3Q9H5J0 574 aa10.81□□□□□ -0.68
SCFD1-211ENST00000554437 FMNL1O95466 1100 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-211ENST00000554437 HRCP23327 699 aa10.8□□□□□ -0.68
SCFD1-211ENST00000554437 RNF19BQ6ZMZ0 732 aa10.8□□□□□ -0.68
SCFD1-211ENST00000554437 SALL2Q9Y467 1007 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-211ENST00000554437 LILRB3O75022 631 aa10.79□□□□□ -0.68
SCFD1-211ENST00000554437 BRICD5Q6PL45 260 aa10.79□□□□□ -0.68
SCFD1-211ENST00000554437 THAP11Q96EK4 314 aa10.78□□□□□ -0.68
SCFD1-211ENST00000554437 SPDYE5A6NIY4 337 aa10.77□□□□□ -0.69
SCFD1-211ENST00000554437 TLL1O43897 1013 aa10.77□□□□□ -0.69
SCFD1-211ENST00000554437 KCNC4Q03721 635 aa10.77□□□□□ -0.69
SCFD1-211ENST00000554437 RTL5Q5HYW3 569 aaPredicted RBP10.77□□□□□ -0.69
SCFD1-211ENST00000554437 SPSB2Q99619 263 aa10.77□□□□□ -0.69
SCFD1-211ENST00000554437 RETREG3Q86VR2 466 aa10.76□□□□□ -0.69
SCFD1-211ENST00000554437 USB1Q9BQ65 265 aaKnown RBP10.76□□□□□ -0.69
SCFD1-211ENST00000554437 ITGBL1O95965 494 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-211ENST00000554437 FBXO31Q5XUX0 539 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-211ENST00000554437 PPP2R2DQ66LE6 453 aa10.75□□□□□ -0.69
SCFD1-211ENST00000554437 ADH1BP00325 375 aa10.74□□□□□ -0.69
SCFD1-211ENST00000554437 RFC5P40937 340 aa10.74□□□□□ -0.69
SCFD1-211ENST00000554437 NKX2-3Q8TAU0 364 aa10.74□□□□□ -0.69
SCFD1-211ENST00000554437 PRR7Q8TB68 274 aa10.73□□□□□ -0.69
SCFD1-211ENST00000554437 TSC1Q92574 1164 aa10.73□□□□□ -0.69
SCFD1-211ENST00000554437 LCE2BO14633 110 aa10.72□□□□□ -0.69
SCFD1-211ENST00000554437 CFAP99D6REC4 459 aa10.71□□□□□ -0.69
SCFD1-211ENST00000554437 FAM160A2Q8N612 972 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-211ENST00000554437 AP1G2O75843 785 aa10.7□□□□□ -0.7
SCFD1-211ENST00000554437 GTF3C3Q9Y5Q9 886 aa10.7□□□□□ -0.7
SCFD1-211ENST00000554437 MSS51Q4VC12 460 aa10.69□□□□□ -0.7
SCFD1-211ENST00000554437 TMEM259Q4ZIN3 620 aa10.69□□□□□ -0.7
SCFD1-211ENST00000554437 HELBQ8NG08 1087 aaPredicted RBP10.69□□□□□ -0.7
SCFD1-211ENST00000554437 SLC6A16Q9GZN6 736 aa10.69□□□□□ -0.7
SCFD1-211ENST00000554437 PRDM9Q9NQV7 894 aa10.67□□□□□ -0.7
SCFD1-211ENST00000554437 S1PR4O95977 384 aa10.66□□□□□ -0.7
SCFD1-211ENST00000554437 JUNDP17535 347 aa10.66□□□□□ -0.7
SCFD1-211ENST00000554437 DESI1Q6ICB0 168 aa10.66□□□□□ -0.7
SCFD1-211ENST00000554437 CTDSPL2Q05D32 466 aa10.65□□□□□ -0.7
SCFD1-211ENST00000554437 DXOO77932 396 aaKnown RBP10.63□□□□□ -0.71
SCFD1-211ENST00000554437 GGCXP38435 758 aa10.63□□□□□ -0.71
SCFD1-211ENST00000554437 MMP16P51512 607 aa10.63□□□□□ -0.71
SCFD1-211ENST00000554437 TRAF7Q6Q0C0 670 aa10.63□□□□□ -0.71
SCFD1-211ENST00000554437 BANK1Q8NDB2 785 aa10.63□□□□□ -0.71
SCFD1-211ENST00000554437 USP17L8P0C7I0 530 aa10.62□□□□□ -0.71
SCFD1-211ENST00000554437 LYPD8Q6UX82 237 aa10.62□□□□□ -0.71
SCFD1-211ENST00000554437 PER1O15534 1290 aaPredicted RBP10.61□□□□□ -0.71
SCFD1-211ENST00000554437 PTPRNQ16849 979 aa10.6□□□□□ -0.71
SCFD1-211ENST00000554437 PPP1R18Q6NYC8 613 aa10.6□□□□□ -0.71
SCFD1-211ENST00000554437 PPEF1O14829 653 aaPredicted RBP10.59□□□□□ -0.71
SCFD1-211ENST00000554437 CCDC24Q8N4L8 307 aa10.59□□□□□ -0.71
SCFD1-211ENST00000554437 LRRN4Q8WUT4 740 aa10.59□□□□□ -0.71
SCFD1-211ENST00000554437 NUDT12Q9BQG2 462 aa10.59□□□□□ -0.71
SCFD1-211ENST00000554437 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.59□□□□□ -0.71
SCFD1-211ENST00000554437 SNRKQ9NRH2 765 aa10.59□□□□□ -0.71
SCFD1-211ENST00000554437 RNF223E7ERA6 249 aa10.58□□□□□ -0.72
SCFD1-211ENST00000554437 FLIIQ13045 1269 aa10.58□□□□□ -0.72
SCFD1-211ENST00000554437 FCF1Q9Y324 198 aaKnown RBP10.58□□□□□ -0.72
SCFD1-211ENST00000554437 CCNYL3P0C7X3 344 aa10.57□□□□□ -0.72
SCFD1-211ENST00000554437 GFRA3O60609 400 aa10.56□□□□□ -0.72
SCFD1-211ENST00000554437 CTHP32929 405 aa10.56□□□□□ -0.72
SCFD1-211ENST00000554437 LAPTM4AQ15012 233 aa10.56□□□□□ -0.72
SCFD1-211ENST00000554437 MCM6Q14566 821 aa10.55□□□□□ -0.72
SCFD1-211ENST00000554437 ANKLE1Q8NAG6 615 aa10.55□□□□□ -0.72
SCFD1-211ENST00000554437 HMX1Q9NP08 348 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-211ENST00000554437 EVA1BQ9NVM1 165 aa10.55□□□□□ -0.72
SCFD1-211ENST00000554437 MTMR14Q8NCE2 650 aa10.54□□□□□ -0.72
SCFD1-211ENST00000554437 KCNH2Q12809 1159 aa10.53□□□□□ -0.72
SCFD1-211ENST00000554437 MAP10Q9P2G4 905 aa10.53□□□□□ -0.72
SCFD1-211ENST00000554437 APBB1O00213 710 aa10.52□□□□□ -0.73
SCFD1-211ENST00000554437 F12P00748 615 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-211ENST00000554437 NR6A1Q15406 480 aa10.52□□□□□ -0.73
SCFD1-211ENST00000554437 PTCRAQ6ISU1 281 aaPredicted RBP10.5□□□□□ -0.73
SCFD1-211ENST00000554437 EPS8L1Q8TE68 723 aa10.5□□□□□ -0.73
SCFD1-211ENST00000554437 SOCS7O14512 581 aa10.49□□□□□ -0.73
SCFD1-211ENST00000554437 ZBTB24O43167 697 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-211ENST00000554437 UBTFP17480 764 aaKnown RBP10.49□□□□□ -0.73
SCFD1-211ENST00000554437 PLA2G2CQ5R387 149 aa10.49□□□□□ -0.73
SCFD1-211ENST00000554437 GJD4Q96KN9 370 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-211ENST00000554437 TRIM34Q9BYJ4 488 aa10.49□□□□□ -0.73
SCFD1-211ENST00000554437 PRM3Q9NNZ6 103 aa10.48□□□□□ -0.73
SCFD1-211ENST00000554437 UNC93B1Q9H1C4 597 aa10.47□□□□□ -0.73
SCFD1-211ENST00000554437 PNMA1Q8ND90 353 aa10.46□□□□□ -0.73
SCFD1-211ENST00000554437 NDUFB9Q9Y6M9 179 aa10.46□□□□□ -0.73
SCFD1-211ENST00000554437 RAD21O60216 631 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms