RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 CD46P15529 392 aa7.34□□□□□ -1.23
SRP54-204ENST00000553923 SMPD1P17405 629 aa7.34□□□□□ -1.23
SRP54-204ENST00000553923 NFX1Q12986 1120 aaKnown RBP7.32□□□□□ -1.24
SRP54-204ENST00000553923 C11orf95C9JLR9 678 aaPredicted RBP7.31□□□□□ -1.24
SRP54-204ENST00000553923 ZBTB24O43167 697 aaPredicted RBP7.31□□□□□ -1.24
SRP54-204ENST00000553923 TRIM32Q13049 653 aa7.31□□□□□ -1.24
SRP54-204ENST00000553923 GRIPAP1Q4V328 841 aa7.31□□□□□ -1.24
SRP54-204ENST00000553923 LCE2CQ5TA81 110 aa7.31□□□□□ -1.24
SRP54-204ENST00000553923 SNIP1Q8TAD8 396 aaKnown RBP7.31□□□□□ -1.24
SRP54-204ENST00000553923 TTC24A2A3L6 582 aaPredicted RBP7.3□□□□□ -1.24
SRP54-204ENST00000553923 WFS1O76024 890 aa7.3□□□□□ -1.24
SRP54-204ENST00000553923 DXOO77932 396 aaKnown RBP7.3□□□□□ -1.24
SRP54-204ENST00000553923 PLCB2Q00722 1185 aa7.3□□□□□ -1.24
SRP54-204ENST00000553923 GPIHBP1Q8IV16 184 aa7.3□□□□□ -1.24
SRP54-204ENST00000553923 MRGPRX2Q96LB1 330 aa7.3□□□□□ -1.24
SRP54-204ENST00000553923 J3QL48 77 aa7.29□□□□□ -1.24
SRP54-204ENST00000553923 Q3C1V9 767 aa7.29□□□□□ -1.24
SRP54-204ENST00000553923 USB1Q9BQ65 265 aaKnown RBP7.29□□□□□ -1.24
SRP54-204ENST00000553923 WIPF1O43516 503 aa7.28□□□□□ -1.24
SRP54-204ENST00000553923 HLA-CQ95604 372 aa7.28□□□□□ -1.24
SRP54-204ENST00000553923 ATP13A2Q9NQ11 1180 aa7.28□□□□□ -1.24
SRP54-204ENST00000553923 KDM4AO75164 1064 aa7.27□□□□□ -1.25
SRP54-204ENST00000553923 SNRPBP14678 240 aaKnown RBP7.27□□□□□ -1.25
SRP54-204ENST00000553923 SKOR1P84550 965 aa7.27□□□□□ -1.25
SRP54-204ENST00000553923 MAP2K5Q13163 448 aa7.27□□□□□ -1.25
SRP54-204ENST00000553923 IRF6O14896 467 aa7.26□□□□□ -1.25
SRP54-204ENST00000553923 HPS1Q92902 700 aa7.26□□□□□ -1.25
SRP54-204ENST00000553923 TRIM47Q96LD4 638 aa7.25□□□□□ -1.25
SRP54-204ENST00000553923 HOXA2O43364 376 aa7.24□□□□□ -1.25
SRP54-204ENST00000553923 USP46P62068 366 aa7.24□□□□□ -1.25
SRP54-204ENST00000553923 RC3H1Q5TC82 1133 aaKnown RBP7.24□□□□□ -1.25
SRP54-204ENST00000553923 KDM2AQ9Y2K7 1162 aa7.24□□□□□ -1.25
SRP54-204ENST00000553923 WNT7BP56706 349 aa7.23□□□□□ -1.25
SRP54-204ENST00000553923 MDM2Q00987 491 aaPredicted RBP7.23□□□□□ -1.25
SRP54-204ENST00000553923 REPIN1Q9BWE0 567 aaKnown RBP7.23□□□□□ -1.25
SRP54-204ENST00000553923 TERTO14746 1132 aaKnown RBP7.22□□□□□ -1.25
SRP54-204ENST00000553923 SIAH2O43255 324 aa7.22□□□□□ -1.25
SRP54-204ENST00000553923 GUCA2AQ02747 115 aa7.22□□□□□ -1.25
SRP54-204ENST00000553923 PTCRAQ6ISU1 281 aaPredicted RBP7.21□□□□□ -1.26
SRP54-204ENST00000553923 CCDC24Q8N4L8 307 aa7.21□□□□□ -1.26
SRP54-204ENST00000553923 SYMPKQ92797 1274 aaKnown RBP7.21□□□□□ -1.26
SRP54-204ENST00000553923 SENP2Q9HC62 589 aa7.21□□□□□ -1.26
SRP54-204ENST00000553923 MINK1Q8N4C8 1332 aaPredicted RBP7.21□□□□□ -1.26
SRP54-204ENST00000553923 JUNDP17535 347 aa7.2□□□□□ -1.26
SRP54-204ENST00000553923 STK17AQ9UEE5 414 aa7.2□□□□□ -1.26
SRP54-204ENST00000553923 CCDC102AQ96A19 550 aa7.19□□□□□ -1.26
SRP54-204ENST00000553923 FAM217BQ9NTX9 383 aaPredicted RBP7.19□□□□□ -1.26
SRP54-204ENST00000553923 INSM1Q01101 510 aaPredicted RBP7.18□□□□□ -1.26
SRP54-204ENST00000553923 KIFC2Q96AC6 838 aa7.17□□□□□ -1.26
SRP54-204ENST00000553923 GPCPD1Q9NPB8 672 aa7.17□□□□□ -1.26
SRP54-204ENST00000553923 PCDHGC3Q9UN70 934 aa7.17□□□□□ -1.26
SRP54-204ENST00000553923 RETREG3Q86VR2 466 aa7.16□□□□□ -1.26
SRP54-204ENST00000553923 ALDH1A1P00352 501 aa7.15□□□□□ -1.26
SRP54-204ENST00000553923 TRIM46Q7Z4K8 759 aa7.15□□□□□ -1.26
SRP54-204ENST00000553923 NUDT12Q9BQG2 462 aa7.15□□□□□ -1.26
SRP54-204ENST00000553923 LORP23490 312 aaPredicted RBP7.14□□□□□ -1.27
SRP54-204ENST00000553923 CLCN1P35523 988 aa7.14□□□□□ -1.27
SRP54-204ENST00000553923 SH3BP2P78314 561 aa7.13□□□□□ -1.27
SRP54-204ENST00000553923 FDX1P10109 184 aa7.12□□□□□ -1.27
SRP54-204ENST00000553923 HAP1P54257 671 aaPredicted RBP7.12□□□□□ -1.27
SRP54-204ENST00000553923 NXF1Q9UBU9 619 aaKnown RBP7.12□□□□□ -1.27
SRP54-204ENST00000553923 BMP1P13497 986 aa7.11□□□□□ -1.27
SRP54-204ENST00000553923 EHBP1Q8NDI1 1231 aa7.11□□□□□ -1.27
SRP54-204ENST00000553923 CAPN5O15484 640 aaPredicted RBP7.1□□□□□ -1.27
SRP54-204ENST00000553923 CCNYL3P0C7X3 344 aa7.1□□□□□ -1.27
SRP54-204ENST00000553923 NUTM1Q86Y26 1132 aa7.1□□□□□ -1.27
SRP54-204ENST00000553923 NPAS3Q8IXF0 933 aa7.1□□□□□ -1.27
SRP54-204ENST00000553923 SPIRE2Q8WWL2 714 aa7.1□□□□□ -1.27
SRP54-204ENST00000553923 EVA1BQ9NVM1 165 aa7.1□□□□□ -1.27
SRP54-204ENST00000553923 PTPRNQ16849 979 aa7.09□□□□□ -1.27
SRP54-204ENST00000553923 MPNDQ8N594 471 aa7.09□□□□□ -1.27
SRP54-204ENST00000553923 UNC93B1Q9H1C4 597 aa7.09□□□□□ -1.27
SRP54-204ENST00000553923 C6orf229H3BNL8 230 aa7.08□□□□□ -1.28
SRP54-204ENST00000553923 MS4A1P11836 297 aa7.08□□□□□ -1.28
SRP54-204ENST00000553923 NDUFV2P19404 249 aa7.08□□□□□ -1.28
SRP54-204ENST00000553923 SSTR3P32745 418 aaPredicted RBP7.08□□□□□ -1.28
SRP54-204ENST00000553923 GMPRP36959 345 aa7.08□□□□□ -1.28
SRP54-204ENST00000553923 BAP1Q92560 729 aa7.08□□□□□ -1.28
SRP54-204ENST00000553923 WASF2Q9Y6W5 498 aa7.08□□□□□ -1.28
SRP54-204ENST00000553923 MOXD2PA6NHM9 499 aa7.07□□□□□ -1.28
SRP54-204ENST00000553923 KCNH2Q12809 1159 aa7.07□□□□□ -1.28
SRP54-204ENST00000553923 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.07□□□□□ -1.28
SRP54-204ENST00000553923 SLC16A10Q8TF71 515 aa7.07□□□□□ -1.28
SRP54-204ENST00000553923 H3BM21 787 aa7.06□□□□□ -1.28
SRP54-204ENST00000553923 TULP1O00294 542 aaPredicted RBP7.06□□□□□ -1.28
SRP54-204ENST00000553923 DESI1Q6ICB0 168 aa7.06□□□□□ -1.28
SRP54-204ENST00000553923 TLL2Q9Y6L7 1015 aa7.06□□□□□ -1.28
SRP54-204ENST00000553923 LINC01559Q495D7 138 aa7.05□□□□□ -1.28
SRP54-204ENST00000553923 ZNF511Q8NB15 262 aa7.05□□□□□ -1.28
SRP54-204ENST00000553923 PRR7Q8TB68 274 aa7.05□□□□□ -1.28
SRP54-204ENST00000553923 ZFP42Q96MM3 310 aa7.05□□□□□ -1.28
SRP54-204ENST00000553923 KLF16Q9BXK1 252 aaPredicted RBP7.05□□□□□ -1.28
SRP54-204ENST00000553923 ERBB4Q15303 1308 aa7.04□□□□□ -1.28
SRP54-204ENST00000553923 VARSP26640 1264 aaKnown RBP7.04□□□□□ -1.28
SRP54-204ENST00000553923 VEGFBP49765 207 aa7.04□□□□□ -1.28
SRP54-204ENST00000553923 VSIG10Q8N0Z9 540 aa7.04□□□□□ -1.28
SRP54-204ENST00000553923 IRF7Q92985 503 aa7.04□□□□□ -1.28
SRP54-204ENST00000553923 AMHR2Q16671 573 aa7.03□□□□□ -1.28
SRP54-204ENST00000553923 KRI1Q8N9T8 703 aaKnown RBP7.03□□□□□ -1.28
SRP54-204ENST00000553923 ZSCAN1Q8NBB4 408 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms