RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PPP2R1AP30153 589 aa17.21■□□□□ 0.35
VIPAS39-206ENST00000553888 PLEKHH1Q9ULM0 1364 aa17.21■□□□□ 0.35
VIPAS39-206ENST00000553888 BCANQ96GW7 911 aa17.2■□□□□ 0.34
VIPAS39-206ENST00000553888 METP08581 1390 aa17.2■□□□□ 0.34
VIPAS39-206ENST00000553888 NSD3Q9BZ95 1437 aa17.19■□□□□ 0.34
VIPAS39-206ENST00000553888 SALL2Q9Y467 1007 aaPredicted RBP17.19■□□□□ 0.34
VIPAS39-206ENST00000553888 SRPK2P78362 688 aaKnown RBP17.19■□□□□ 0.34
VIPAS39-206ENST00000553888 TMEM2Q9UHN6 1383 aa17.18■□□□□ 0.34
VIPAS39-206ENST00000553888 FKBP8Q14318 412 aa17.18■□□□□ 0.34
VIPAS39-206ENST00000553888 LTKP29376 864 aa17.17■□□□□ 0.34
VIPAS39-206ENST00000553888 TNNT2P45379 298 aaPredicted RBP17.16■□□□□ 0.34
VIPAS39-206ENST00000553888 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.16■□□□□ 0.34
VIPAS39-206ENST00000553888 TXNDC2Q86VQ3 553 aa17.15■□□□□ 0.34
VIPAS39-206ENST00000553888 RIMS1Q86UR5 1692 aaKnown RBP17.14■□□□□ 0.34
VIPAS39-206ENST00000553888 IRX6P78412 446 aaPredicted RBP17.14■□□□□ 0.33
VIPAS39-206ENST00000553888 CDK19Q9BWU1 502 aa17.13■□□□□ 0.33
VIPAS39-206ENST00000553888 NPC1L1Q9UHC9 1359 aa17.13■□□□□ 0.33
VIPAS39-206ENST00000553888 PLEKHG5O94827 1062 aa17.13■□□□□ 0.33
VIPAS39-206ENST00000553888 NLRP1Q9C000 1473 aa17.13■□□□□ 0.33
VIPAS39-206ENST00000553888 SLC26A8Q96RN1 970 aa17.11■□□□□ 0.33
VIPAS39-206ENST00000553888 ADAMTS8Q9UP79 889 aa17.11■□□□□ 0.33
VIPAS39-206ENST00000553888 ADAMTS13Q76LX8 1427 aa17.11■□□□□ 0.33
VIPAS39-206ENST00000553888 A0A1W2PP64 1363 aa17.11■□□□□ 0.33
VIPAS39-206ENST00000553888 DLC1Q96QB1 1528 aa17.1■□□□□ 0.33
VIPAS39-206ENST00000553888 ANKRD36BQ8N2N9 1353 aa17.1■□□□□ 0.33
VIPAS39-206ENST00000553888 ABCC11Q96J66 1382 aa17.1■□□□□ 0.33
VIPAS39-206ENST00000553888 HDGFP51858 240 aaKnown RBP17.09■□□□□ 0.33
VIPAS39-206ENST00000553888 MORC1Q86VD1 984 aa17.08■□□□□ 0.32
VIPAS39-206ENST00000553888 CD163L1Q9NR16 1453 aa17.08■□□□□ 0.32
VIPAS39-206ENST00000553888 PUS7Q96PZ0 661 aaKnown RBP17.07■□□□□ 0.32
VIPAS39-206ENST00000553888 CABP1Q9NZU7 370 aa17.07■□□□□ 0.32
VIPAS39-206ENST00000553888 NCKAP5LQ9HCH0 1330 aa17.07■□□□□ 0.32
VIPAS39-206ENST00000553888 NEFLP07196 543 aa17.07■□□□□ 0.32
VIPAS39-206ENST00000553888 BLMP54132 1417 aaPredicted RBP17.06■□□□□ 0.32
VIPAS39-206ENST00000553888 USP32Q8NFA0 1604 aa17.06■□□□□ 0.32
VIPAS39-206ENST00000553888 KNDC1Q76NI1 1749 aa17.06■□□□□ 0.32
VIPAS39-206ENST00000553888 ROBO2Q9HCK4 1378 aa17.06■□□□□ 0.32
VIPAS39-206ENST00000553888 PLEKHG1Q9ULL1 1385 aa17.05■□□□□ 0.32
VIPAS39-206ENST00000553888 CGNL1Q0VF96 1302 aa17.05■□□□□ 0.32
VIPAS39-206ENST00000553888 ATAD2Q6PL18 1390 aa17.05■□□□□ 0.32
VIPAS39-206ENST00000553888 WDR43Q15061 677 aaKnown RBP eCLIP17.05■□□□□ 0.32
VIPAS39-206ENST00000553888 CCDC146Q8IYE0 955 aa17.04■□□□□ 0.32
VIPAS39-206ENST00000553888 PTPRUQ92729 1446 aa17.04■□□□□ 0.32
VIPAS39-206ENST00000553888 GGNBP2Q9H3C7 697 aa17.04■□□□□ 0.32
VIPAS39-206ENST00000553888 EID1Q9Y6B2 187 aa17.04■□□□□ 0.32
VIPAS39-206ENST00000553888 SLIT1O75093 1534 aa17.04■□□□□ 0.32
VIPAS39-206ENST00000553888 ARHGAP23Q9P227 1491 aa17.03■□□□□ 0.32
VIPAS39-206ENST00000553888 SMG6Q86US8 1419 aaKnown RBP17.03■□□□□ 0.32
VIPAS39-206ENST00000553888 CPS1P31327 1500 aa17.03■□□□□ 0.32
VIPAS39-206ENST00000553888 CDCA7LQ96GN5 454 aa17.03■□□□□ 0.32
VIPAS39-206ENST00000553888 NUDCQ9Y266 331 aa17.03■□□□□ 0.32
VIPAS39-206ENST00000553888 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.02■□□□□ 0.32
VIPAS39-206ENST00000553888 ADAMTSL3P82987 1691 aa17.02■□□□□ 0.31
VIPAS39-206ENST00000553888 CEP170BQ9Y4F5 1589 aaPredicted RBP17.02■□□□□ 0.31
VIPAS39-206ENST00000553888 WASLO00401 505 aaPredicted RBP17.01■□□□□ 0.31
VIPAS39-206ENST00000553888 TECPR2O15040 1411 aa17.01■□□□□ 0.31
VIPAS39-206ENST00000553888 NUTM2FA1L443 756 aa17.01■□□□□ 0.31
VIPAS39-206ENST00000553888 THEMISQ8N1K5 641 aaPredicted RBP17.01■□□□□ 0.31
VIPAS39-206ENST00000553888 MED14O60244 1454 aa17■□□□□ 0.31
VIPAS39-206ENST00000553888 SHPRHQ149N8 1683 aa17■□□□□ 0.31
VIPAS39-206ENST00000553888 TERF2IPQ9NYB0 399 aa17■□□□□ 0.31
VIPAS39-206ENST00000553888 NINLQ9Y2I6 1382 aa16.99■□□□□ 0.31
VIPAS39-206ENST00000553888 MTHFSP49914 203 aa16.99■□□□□ 0.31
VIPAS39-206ENST00000553888 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.99■□□□□ 0.31
VIPAS39-206ENST00000553888 FAM135BQ49AJ0 1406 aa16.99■□□□□ 0.31
VIPAS39-206ENST00000553888 FYB1O15117 783 aa16.99■□□□□ 0.31
VIPAS39-206ENST00000553888 KIF20BQ96Q89 1820 aa16.98■□□□□ 0.31
VIPAS39-206ENST00000553888 HDGFL2Q7Z4V5 671 aaPredicted RBP16.97■□□□□ 0.31
VIPAS39-206ENST00000553888 AMOTL2Q9Y2J4 779 aa16.97■□□□□ 0.31
VIPAS39-206ENST00000553888 PPIP5K1Q6PFW1 1433 aa16.97■□□□□ 0.31
VIPAS39-206ENST00000553888 PRR36Q9H6K5 1346 aa16.97■□□□□ 0.31
VIPAS39-206ENST00000553888 FBLN1P23142 703 aa16.97■□□□□ 0.31
VIPAS39-206ENST00000553888 NUDT16Q96DE0 195 aaKnown RBP16.97■□□□□ 0.31
VIPAS39-206ENST00000553888 ANKRD26Q9UPS8 1709 aa16.96■□□□□ 0.31
VIPAS39-206ENST00000553888 POLR3AO14802 1390 aaPredicted RBP16.96■□□□□ 0.3
VIPAS39-206ENST00000553888 NSD2O96028 1365 aa16.94■□□□□ 0.3
VIPAS39-206ENST00000553888 INSRP06213 1382 aa16.94■□□□□ 0.3
VIPAS39-206ENST00000553888 ZRANB1Q9UGI0 708 aa16.94■□□□□ 0.3
VIPAS39-206ENST00000553888 APAF1O14727 1248 aa16.93■□□□□ 0.3
VIPAS39-206ENST00000553888 SIRT1Q96EB6 747 aa16.93■□□□□ 0.3
VIPAS39-206ENST00000553888 ATP7BP35670 1465 aa16.93■□□□□ 0.3
VIPAS39-206ENST00000553888 TBX22Q9Y458 520 aa16.93■□□□□ 0.3
VIPAS39-206ENST00000553888 RGPD8O14715 1765 aaPredicted RBP16.92■□□□□ 0.3
VIPAS39-206ENST00000553888 SETD1BQ9UPS6 1966 aaKnown RBP16.91■□□□□ 0.3
VIPAS39-206ENST00000553888 ZNF142P52746 1687 aaPredicted RBP16.91■□□□□ 0.3
VIPAS39-206ENST00000553888 NME9Q86XW9 330 aa16.91■□□□□ 0.3
VIPAS39-206ENST00000553888 ITSN1Q15811 1721 aa16.91■□□□□ 0.3
VIPAS39-206ENST00000553888 RBM33Q96EV2 1170 aaKnown RBP16.9■□□□□ 0.3
VIPAS39-206ENST00000553888 CCDC61Q9Y6R9 512 aa16.9■□□□□ 0.3
VIPAS39-206ENST00000553888 CPSF1Q10570 1443 aaKnown RBP16.9■□□□□ 0.3
VIPAS39-206ENST00000553888 KCNA6P17658 529 aa16.9■□□□□ 0.3
VIPAS39-206ENST00000553888 CDC42BPGQ6DT37 1551 aa16.9■□□□□ 0.3
VIPAS39-206ENST00000553888 AKAP12Q02952 1782 aa16.9■□□□□ 0.3
VIPAS39-206ENST00000553888 MON2Q7Z3U7 1717 aa16.89■□□□□ 0.29
VIPAS39-206ENST00000553888 ADGRB2O60241 1585 aa16.89■□□□□ 0.29
VIPAS39-206ENST00000553888 MAP2P11137 1827 aaKnown RBP16.89■□□□□ 0.29
VIPAS39-206ENST00000553888 XRN1Q8IZH2 1706 aaKnown RBP16.89■□□□□ 0.29
VIPAS39-206ENST00000553888 RRP7AQ9Y3A4 280 aaKnown RBP16.88■□□□□ 0.29
VIPAS39-206ENST00000553888 NKTRP30414 1462 aaKnown RBP16.88■□□□□ 0.29
VIPAS39-206ENST00000553888 DIP2AQ14689 1571 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms