RNA–Protein interactions for RNA: ENST00000553649.2

SMARCE1P3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3, humanhuman

BASIC

Gene SMARCE1P3, Length 1,231 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1P3-201ENST00000553649 WBP1LQ9NX94 342 aa9.61□□□□□ -0.87
SMARCE1P3-201ENST00000553649 KIAA1468Q9P260 1216 aa9.61□□□□□ -0.87
SMARCE1P3-201ENST00000553649 SRCAPQ6ZRS2 3230 aa9.61□□□□□ -0.87
SMARCE1P3-201ENST00000553649 C3P01024 1663 aa9.61□□□□□ -0.87
SMARCE1P3-201ENST00000553649 TCOF1Q13428 1488 aaKnown RBP9.6□□□□□ -0.87
SMARCE1P3-201ENST00000553649 Q6ZNB5 142 aa9.6□□□□□ -0.87
SMARCE1P3-201ENST00000553649 ZFRQ96KR1 1074 aaKnown RBP9.6□□□□□ -0.87
SMARCE1P3-201ENST00000553649 SETD1BQ9UPS6 1966 aaKnown RBP9.6□□□□□ -0.87
SMARCE1P3-201ENST00000553649 CFAP74Q9C0B2 1584 aa9.59□□□□□ -0.87
SMARCE1P3-201ENST00000553649 LAPTM4BQ86VI4 370 aa9.59□□□□□ -0.87
SMARCE1P3-201ENST00000553649 PLA2R1Q13018 1463 aa9.59□□□□□ -0.87
SMARCE1P3-201ENST00000553649 CTTNBP2Q8WZ74 1663 aa9.58□□□□□ -0.88
SMARCE1P3-201ENST00000553649 SCAPERQ9BY12 1400 aa9.58□□□□□ -0.88
SMARCE1P3-201ENST00000553649 TYW1BQ6NUM6 668 aa9.58□□□□□ -0.88
SMARCE1P3-201ENST00000553649 SEPT9Q9UHD8 586 aaPredicted RBP9.58□□□□□ -0.88
SMARCE1P3-201ENST00000553649 PHF14O94880 888 aa9.57□□□□□ -0.88
SMARCE1P3-201ENST00000553649 PTPRKQ15262 1439 aa9.56□□□□□ -0.88
SMARCE1P3-201ENST00000553649 CPS1P31327 1500 aa9.56□□□□□ -0.88
SMARCE1P3-201ENST00000553649 SETD1AO15047 1707 aaKnown RBP9.56□□□□□ -0.88
SMARCE1P3-201ENST00000553649 NUP153P49790 1475 aaKnown RBP9.56□□□□□ -0.88
SMARCE1P3-201ENST00000553649 CADPS2Q86UW7 1296 aa9.56□□□□□ -0.88
SMARCE1P3-201ENST00000553649 NPATQ14207 1427 aa9.56□□□□□ -0.88
SMARCE1P3-201ENST00000553649 KCNC4Q03721 635 aa9.55□□□□□ -0.88
SMARCE1P3-201ENST00000553649 FBXW7Q969H0 707 aa9.55□□□□□ -0.88
SMARCE1P3-201ENST00000553649 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.55□□□□□ -0.88
SMARCE1P3-201ENST00000553649 REREQ9P2R6 1566 aa9.54□□□□□ -0.88
SMARCE1P3-201ENST00000553649 PRXQ9BXM0 1461 aa9.54□□□□□ -0.88
SMARCE1P3-201ENST00000553649 SHANK2Q9UPX8 1470 aa9.54□□□□□ -0.88
SMARCE1P3-201ENST00000553649 C6orf132Q5T0Z8 1188 aa9.54□□□□□ -0.88
SMARCE1P3-201ENST00000553649 RAPGEF6Q8TEU7 1601 aa9.53□□□□□ -0.88
SMARCE1P3-201ENST00000553649 ONECUT3O60422 494 aaPredicted RBP9.53□□□□□ -0.88
SMARCE1P3-201ENST00000553649 NYAP1Q6ZVC0 841 aa9.53□□□□□ -0.88
SMARCE1P3-201ENST00000553649 SAMD9Q5K651 1589 aa9.53□□□□□ -0.88
SMARCE1P3-201ENST00000553649 AGLP35573 1532 aa9.52□□□□□ -0.88
SMARCE1P3-201ENST00000553649 CNTLNQ9NXG0 1405 aa9.51□□□□□ -0.89
SMARCE1P3-201ENST00000553649 TRIM6-TRIM34B2RNG4 842 aa9.51□□□□□ -0.89
SMARCE1P3-201ENST00000553649 KDM5CP41229 1560 aa9.5□□□□□ -0.89
SMARCE1P3-201ENST00000553649 DIP2CQ9Y2E4 1556 aa9.5□□□□□ -0.89
SMARCE1P3-201ENST00000553649 PLCH2O75038 1416 aa9.5□□□□□ -0.89
SMARCE1P3-201ENST00000553649 P3H3Q8IVL6 736 aa9.5□□□□□ -0.89
SMARCE1P3-201ENST00000553649 FAM98CQ17RN3 349 aaKnown RBP9.49□□□□□ -0.89
SMARCE1P3-201ENST00000553649 ESF1Q9H501 851 aaKnown RBP9.49□□□□□ -0.89
SMARCE1P3-201ENST00000553649 AFAP1Q8N556 730 aa9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 TSR3Q9UJK0 312 aaKnown RBP9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 HPS5Q9UPZ3 1129 aa9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 VWDEQ8N2E2 1590 aa9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 CEP170BQ9Y4F5 1589 aaPredicted RBP9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 ZNF142P52746 1687 aaPredicted RBP9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 ZMYM3Q14202 1370 aa9.48□□□□□ -0.89
SMARCE1P3-201ENST00000553649 ZNF518AQ6AHZ1 1483 aa9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 MYO3AQ8NEV4 1616 aa9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 PLEKHD1A6NEE1 506 aa9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 CAMK2BQ13554 666 aa9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 FAM9AQ8IZU1 332 aaPredicted RBP9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 RBM33Q96EV2 1170 aaKnown RBP9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 EPAS1Q99814 870 aa9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.47□□□□□ -0.89
SMARCE1P3-201ENST00000553649 NEURL4Q96JN8 1562 aa9.46□□□□□ -0.89
SMARCE1P3-201ENST00000553649 DPYSL4O14531 572 aa9.46□□□□□ -0.9
SMARCE1P3-201ENST00000553649 LRCH3Q96II8 777 aa9.45□□□□□ -0.9
SMARCE1P3-201ENST00000553649 RTN4Q9NQC3 1192 aaKnown RBP9.45□□□□□ -0.9
SMARCE1P3-201ENST00000553649 TSKSQ9UJT2 592 aa9.45□□□□□ -0.9
SMARCE1P3-201ENST00000553649 ABCA6Q8N139 1617 aa9.45□□□□□ -0.9
SMARCE1P3-201ENST00000553649 GFRA3O60609 400 aa9.44□□□□□ -0.9
SMARCE1P3-201ENST00000553649 TRAF7Q6Q0C0 670 aa9.44□□□□□ -0.9
SMARCE1P3-201ENST00000553649 MLH3Q9UHC1 1453 aa9.44□□□□□ -0.9
SMARCE1P3-201ENST00000553649 LRRC7Q96NW7 1537 aa9.44□□□□□ -0.9
SMARCE1P3-201ENST00000553649 RANGAP1P46060 587 aaPredicted RBP9.43□□□□□ -0.9
SMARCE1P3-201ENST00000553649 TJAP1Q5JTD0 557 aa9.43□□□□□ -0.9
SMARCE1P3-201ENST00000553649 DDX12PQ92771 950 aa9.43□□□□□ -0.9
SMARCE1P3-201ENST00000553649 LAPTM4AQ15012 233 aa9.42□□□□□ -0.9
SMARCE1P3-201ENST00000553649 TSR1Q2NL82 804 aaKnown RBP9.42□□□□□ -0.9
SMARCE1P3-201ENST00000553649 EFCAB2Q5VUJ9 269 aa9.42□□□□□ -0.9
SMARCE1P3-201ENST00000553649 MROH2AA6NES4 1674 aa9.42□□□□□ -0.9
SMARCE1P3-201ENST00000553649 RNF17Q9BXT8 1623 aaKnown RBP9.42□□□□□ -0.9
SMARCE1P3-201ENST00000553649 C3orf80F5H4A9 247 aa9.41□□□□□ -0.9
SMARCE1P3-201ENST00000553649 A2ML1A8K2U0 1454 aa9.4□□□□□ -0.9
SMARCE1P3-201ENST00000553649 AMER1Q5JTC6 1135 aaPredicted RBP9.4□□□□□ -0.9
SMARCE1P3-201ENST00000553649 FAM198AQ9UFP1 575 aa9.4□□□□□ -0.9
SMARCE1P3-201ENST00000553649 DNMT1P26358 1616 aaKnown RBP9.39□□□□□ -0.91
SMARCE1P3-201ENST00000553649 TRIM52Q96A61 297 aa9.39□□□□□ -0.91
SMARCE1P3-201ENST00000553649 PRKD2Q9BZL6 878 aa9.39□□□□□ -0.91
SMARCE1P3-201ENST00000553649 FAM135BQ49AJ0 1406 aa9.39□□□□□ -0.91
SMARCE1P3-201ENST00000553649 SMAPO00193 183 aa9.38□□□□□ -0.91
SMARCE1P3-201ENST00000553649 PPP4CP60510 307 aa9.37□□□□□ -0.91
SMARCE1P3-201ENST00000553649 EN1Q05925 392 aaPredicted RBP9.37□□□□□ -0.91
SMARCE1P3-201ENST00000553649 MED14O60244 1454 aa9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 PRIM1P49642 420 aaKnown RBP9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 PPP1R18Q6NYC8 613 aa9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 SAMD7Q7Z3H4 446 aa9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 PACS2Q86VP3 889 aa9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 NPHP4O75161 1426 aaPredicted RBP9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 CDK13Q14004 1512 aaKnown RBP9.36□□□□□ -0.91
SMARCE1P3-201ENST00000553649 NRG2O14511 850 aaPredicted RBP9.35□□□□□ -0.91
SMARCE1P3-201ENST00000553649 SYNMO15061 1565 aa9.35□□□□□ -0.91
SMARCE1P3-201ENST00000553649 POLR1AO95602 1720 aaPredicted RBP9.35□□□□□ -0.91
SMARCE1P3-201ENST00000553649 SUPT6HQ7KZ85 1726 aaKnown RBP9.35□□□□□ -0.91
SMARCE1P3-201ENST00000553649 ZNF516Q92618 1163 aa9.35□□□□□ -0.91
SMARCE1P3-201ENST00000553649 MTRQ99707 1265 aa9.35□□□□□ -0.91
SMARCE1P3-201ENST00000553649 SETBP1Q9Y6X0 1596 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms