RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 THAP11Q96EK4 314 aa9.59□□□□□ -0.87
SCFD1-209ENST00000553280 V9GY48 417 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-209ENST00000553280 FMNL1O95466 1100 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-209ENST00000553280 SSTR3P32745 418 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-209ENST00000553280 RNF19BQ6ZMZ0 732 aa9.58□□□□□ -0.88
SCFD1-209ENST00000553280 ANKLE1Q8NAG6 615 aa9.58□□□□□ -0.88
SCFD1-209ENST00000553280 EMID1Q96A84 441 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-209ENST00000553280 SLC19A1P41440 591 aa9.56□□□□□ -0.88
SCFD1-209ENST00000553280 BRICD5Q6PL45 260 aa9.56□□□□□ -0.88
SCFD1-209ENST00000553280 FAM160A2Q8N612 972 aaPredicted RBP9.56□□□□□ -0.88
SCFD1-209ENST00000553280 PRDM9Q9NQV7 894 aa9.56□□□□□ -0.88
SCFD1-209ENST00000553280 GFRA3O60609 400 aa9.55□□□□□ -0.88
SCFD1-209ENST00000553280 GUCA2AQ02747 115 aa9.55□□□□□ -0.88
SCFD1-209ENST00000553280 SKIV2LQ15477 1246 aaKnown RBP9.55□□□□□ -0.88
SCFD1-209ENST00000553280 PLA2G2CQ5R387 149 aa9.55□□□□□ -0.88
SCFD1-209ENST00000553280 HOXA2O43364 376 aa9.54□□□□□ -0.88
SCFD1-209ENST00000553280 LIAT1Q6ZQX7 453 aa9.54□□□□□ -0.88
SCFD1-209ENST00000553280 NUTM1Q86Y26 1132 aa9.54□□□□□ -0.88
SCFD1-209ENST00000553280 USP46P62068 366 aa9.53□□□□□ -0.88
SCFD1-209ENST00000553280 Q6ZNB5 142 aa9.53□□□□□ -0.88
SCFD1-209ENST00000553280 BEGAINQ9BUH8 593 aa9.53□□□□□ -0.88
SCFD1-209ENST00000553280 SALL2Q9Y467 1007 aaPredicted RBP9.53□□□□□ -0.88
SCFD1-209ENST00000553280 Q3C1V9 767 aa9.52□□□□□ -0.89
SCFD1-209ENST00000553280 FCF1Q9Y324 198 aaKnown RBP9.52□□□□□ -0.89
SCFD1-209ENST00000553280 A6NJR5 290 aa9.51□□□□□ -0.89
SCFD1-209ENST00000553280 UBTFP17480 764 aaKnown RBP9.51□□□□□ -0.89
SCFD1-209ENST00000553280 SPRYD7Q5W111 196 aa9.51□□□□□ -0.89
SCFD1-209ENST00000553280 C1orf115Q9H7X2 142 aa9.51□□□□□ -0.89
SCFD1-209ENST00000553280 SYMPKQ92797 1274 aaKnown RBP9.5□□□□□ -0.89
SCFD1-209ENST00000553280 MSS51Q4VC12 460 aa9.49□□□□□ -0.89
SCFD1-209ENST00000553280 PDZRN3Q9UPQ7 1066 aa9.49□□□□□ -0.89
SCFD1-209ENST00000553280 APBB1O00213 710 aa9.48□□□□□ -0.89
SCFD1-209ENST00000553280 LAPTM4AQ15012 233 aa9.48□□□□□ -0.89
SCFD1-209ENST00000553280 SPIRE2Q8WWL2 714 aa9.48□□□□□ -0.89
SCFD1-209ENST00000553280 USB1Q9BQ65 265 aaKnown RBP9.48□□□□□ -0.89
SCFD1-209ENST00000553280 MCM6Q14566 821 aa9.47□□□□□ -0.89
SCFD1-209ENST00000553280 ZNF697Q5TEC3 545 aa9.47□□□□□ -0.89
SCFD1-209ENST00000553280 ZNF598Q86UK7 904 aaKnown RBP9.47□□□□□ -0.89
SCFD1-209ENST00000553280 PROCA1Q8NCQ7 364 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-209ENST00000553280 NRG2O14511 850 aaPredicted RBP9.46□□□□□ -0.9
SCFD1-209ENST00000553280 FDX1P10109 184 aa9.46□□□□□ -0.9
SCFD1-209ENST00000553280 NDUFV2P19404 249 aa9.46□□□□□ -0.9
SCFD1-209ENST00000553280 POLR3EQ9NVU0 708 aa9.46□□□□□ -0.9
SCFD1-209ENST00000553280 MOXD2PA6NHM9 499 aa9.45□□□□□ -0.9
SCFD1-209ENST00000553280 ARID3CA6NKF2 412 aa9.45□□□□□ -0.9
SCFD1-209ENST00000553280 TRAK2O60296 914 aa9.45□□□□□ -0.9
SCFD1-209ENST00000553280 TRIM67Q6ZTA4 783 aa9.45□□□□□ -0.9
SCFD1-209ENST00000553280 CLUAP1Q96AJ1 413 aa9.45□□□□□ -0.9
SCFD1-209ENST00000553280 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.45□□□□□ -0.9
SCFD1-209ENST00000553280 PCDHGC3Q9UN70 934 aa9.45□□□□□ -0.9
SCFD1-209ENST00000553280 MYSM1Q5VVJ2 828 aa9.44□□□□□ -0.9
SCFD1-209ENST00000553280 C6orf229H3BNL8 230 aa9.43□□□□□ -0.9
SCFD1-209ENST00000553280 TNFRSF10AO00220 468 aa9.43□□□□□ -0.9
SCFD1-209ENST00000553280 MMP16P51512 607 aa9.43□□□□□ -0.9
SCFD1-209ENST00000553280 DIXDC1Q155Q3 683 aa9.43□□□□□ -0.9
SCFD1-209ENST00000553280 ARID3AQ99856 593 aa9.43□□□□□ -0.9
SCFD1-209ENST00000553280 CCDC24Q8N4L8 307 aa9.42□□□□□ -0.9
SCFD1-209ENST00000553280 TBC1D2Q9BYX2 928 aa9.42□□□□□ -0.9
SCFD1-209ENST00000553280 ATP1B4Q9UN42 357 aaPredicted RBP9.42□□□□□ -0.9
SCFD1-209ENST00000553280 ZBTB24O43167 697 aaPredicted RBP9.41□□□□□ -0.9
SCFD1-209ENST00000553280 DXOO77932 396 aaKnown RBP9.41□□□□□ -0.9
SCFD1-209ENST00000553280 FOXC1Q12948 553 aa9.41□□□□□ -0.9
SCFD1-209ENST00000553280 LCE2BO14633 110 aa9.4□□□□□ -0.9
SCFD1-209ENST00000553280 RPIAP49247 311 aa9.4□□□□□ -0.9
SCFD1-209ENST00000553280 CLK2P49760 499 aaKnown RBP9.4□□□□□ -0.9
SCFD1-209ENST00000553280 RETREG3Q86VR2 466 aa9.4□□□□□ -0.9
SCFD1-209ENST00000553280 GDF9O60383 454 aa9.39□□□□□ -0.91
SCFD1-209ENST00000553280 CD2BP2O95400 341 aaKnown RBP9.39□□□□□ -0.91
SCFD1-209ENST00000553280 TRAF7Q6Q0C0 670 aa9.39□□□□□ -0.91
SCFD1-209ENST00000553280 SPDYE5A6NIY4 337 aa9.38□□□□□ -0.91
SCFD1-209ENST00000553280 JUNDP17535 347 aa9.38□□□□□ -0.91
SCFD1-209ENST00000553280 BANK1Q8NDB2 785 aa9.38□□□□□ -0.91
SCFD1-209ENST00000553280 PRR20EP86478 221 aa9.37□□□□□ -0.91
SCFD1-209ENST00000553280 PRR20CP86479 221 aa9.37□□□□□ -0.91
SCFD1-209ENST00000553280 PRR20DP86480 221 aa9.37□□□□□ -0.91
SCFD1-209ENST00000553280 PRR20BP86481 221 aa9.37□□□□□ -0.91
SCFD1-209ENST00000553280 PRR20AP86496 221 aa9.37□□□□□ -0.91
SCFD1-209ENST00000553280 FNBP4Q8N3X1 1017 aaPredicted RBP9.37□□□□□ -0.91
SCFD1-209ENST00000553280 PKD2L1Q9P0L9 805 aa9.37□□□□□ -0.91
SCFD1-209ENST00000553280 RAD21O60216 631 aa9.36□□□□□ -0.91
SCFD1-209ENST00000553280 TMEM259Q4ZIN3 620 aa9.36□□□□□ -0.91
SCFD1-209ENST00000553280 RSBN1LQ6PCB5 846 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-209ENST00000553280 PROSER2Q86WR7 435 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-209ENST00000553280 PCDHB15Q9Y5E8 787 aa9.36□□□□□ -0.91
SCFD1-209ENST00000553280 FAM187AA6NFU0 413 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 RFC5P40937 340 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 TRIM32Q13049 653 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 MTMR2Q13614 643 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 CSPP1Q1MSJ5 1256 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 TUSC1Q2TAM9 212 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 PPP2R2DQ66LE6 453 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 RIC3Q7Z5B4 369 aa9.35□□□□□ -0.91
SCFD1-209ENST00000553280 PKDCCQ504Y2 493 aa9.34□□□□□ -0.91
SCFD1-209ENST00000553280 PRR7Q8TB68 274 aa9.34□□□□□ -0.91
SCFD1-209ENST00000553280 POM121Q96HA1 1249 aa9.34□□□□□ -0.91
SCFD1-209ENST00000553280 NUDT12Q9BQG2 462 aa9.34□□□□□ -0.91
SCFD1-209ENST00000553280 LIMD1Q9UGP4 676 aa9.34□□□□□ -0.91
SCFD1-209ENST00000553280 CCDC82Q8N4S0 544 aa9.33□□□□□ -0.92
SCFD1-209ENST00000553280 SPTLC1O15269 473 aa9.32□□□□□ -0.92
SCFD1-209ENST00000553280 FBXO31Q5XUX0 539 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms