RNA–Protein interactions for RNA: ENST00000551642.1

DEPDC4-210, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-210ENST00000551642 METTL3Q86U44 580 aaKnown RBP12□□□□□ -0.49
DEPDC4-210ENST00000551642 RNF40O75150 1001 aa11.99□□□□□ -0.49
DEPDC4-210ENST00000551642 A0A0G2JS52 829 aa11.98□□□□□ -0.49
DEPDC4-210ENST00000551642 APLP1P51693 650 aa11.97□□□□□ -0.49
DEPDC4-210ENST00000551642 RGS20O76081 388 aa11.96□□□□□ -0.49
DEPDC4-210ENST00000551642 TJAP1Q5JTD0 557 aa11.96□□□□□ -0.49
DEPDC4-210ENST00000551642 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.96□□□□□ -0.49
DEPDC4-210ENST00000551642 PRR14Q9BWN1 585 aa11.96□□□□□ -0.49
DEPDC4-210ENST00000551642 GLI2P10070 1586 aa11.96□□□□□ -0.5
DEPDC4-210ENST00000551642 ABCA10Q8WWZ4 1543 aa11.94□□□□□ -0.5
DEPDC4-210ENST00000551642 IL21Q9HBE4 155 aa11.93□□□□□ -0.5
DEPDC4-210ENST00000551642 KIF21BO75037 1637 aa11.93□□□□□ -0.5
DEPDC4-210ENST00000551642 MTRQ99707 1265 aa11.92□□□□□ -0.5
DEPDC4-210ENST00000551642 MAP3K4Q9Y6R4 1608 aa11.91□□□□□ -0.5
DEPDC4-210ENST00000551642 MAP2K5Q13163 448 aa11.91□□□□□ -0.5
DEPDC4-210ENST00000551642 PCF11O94913 1555 aaKnown RBP11.9□□□□□ -0.5
DEPDC4-210ENST00000551642 DAXXQ9UER7 740 aaPredicted RBP11.9□□□□□ -0.5
DEPDC4-210ENST00000551642 RUSC2Q8N2Y8 1516 aa11.89□□□□□ -0.51
DEPDC4-210ENST00000551642 SLC10A3P09131 477 aa11.88□□□□□ -0.51
DEPDC4-210ENST00000551642 KMT5BQ4FZB7 885 aa11.88□□□□□ -0.51
DEPDC4-210ENST00000551642 RSPH4AQ5TD94 716 aa11.88□□□□□ -0.51
DEPDC4-210ENST00000551642 ADAMTSL3P82987 1691 aa11.87□□□□□ -0.51
DEPDC4-210ENST00000551642 MINK1Q8N4C8 1332 aaPredicted RBP11.87□□□□□ -0.51
DEPDC4-210ENST00000551642 LMOD2Q6P5Q4 547 aa11.87□□□□□ -0.51
DEPDC4-210ENST00000551642 PTPRMP28827 1452 aa11.87□□□□□ -0.51
DEPDC4-210ENST00000551642 FHAD1B1AJZ9 1412 aa11.86□□□□□ -0.51
DEPDC4-210ENST00000551642 IRF6O14896 467 aa11.86□□□□□ -0.51
DEPDC4-210ENST00000551642 ACTN4O43707 911 aaKnown RBP11.86□□□□□ -0.51
DEPDC4-210ENST00000551642 PHOX2BQ99453 314 aa11.86□□□□□ -0.51
DEPDC4-210ENST00000551642 CUL7Q14999 1698 aa11.85□□□□□ -0.51
DEPDC4-210ENST00000551642 PCDHB3Q9Y5E6 796 aa11.85□□□□□ -0.51
DEPDC4-210ENST00000551642 ASXL2Q76L83 1435 aa11.85□□□□□ -0.51
DEPDC4-210ENST00000551642 CFHP08603 1231 aa11.84□□□□□ -0.51
DEPDC4-210ENST00000551642 ZNF516Q92618 1163 aa11.83□□□□□ -0.52
DEPDC4-210ENST00000551642 ZPR1O75312 459 aa11.81□□□□□ -0.52
DEPDC4-210ENST00000551642 SULF1Q8IWU6 871 aa11.81□□□□□ -0.52
DEPDC4-210ENST00000551642 COPS2P61201 443 aa11.8□□□□□ -0.52
DEPDC4-210ENST00000551642 PLB1Q6P1J6 1458 aa11.79□□□□□ -0.52
DEPDC4-210ENST00000551642 BLOC1S3Q6QNY0 202 aa11.79□□□□□ -0.52
DEPDC4-210ENST00000551642 EPRSP07814 1512 aaKnown RBP11.79□□□□□ -0.52
DEPDC4-210ENST00000551642 ABCC2Q92887 1545 aa11.79□□□□□ -0.52
DEPDC4-210ENST00000551642 TEX14Q8IWB6 1497 aa11.78□□□□□ -0.52
DEPDC4-210ENST00000551642 NLRP7Q8WX94 980 aa11.78□□□□□ -0.52
DEPDC4-210ENST00000551642 ZMYND10O75800 440 aa11.77□□□□□ -0.53
DEPDC4-210ENST00000551642 HSPA2P54652 639 aa11.77□□□□□ -0.53
DEPDC4-210ENST00000551642 CCDC102AQ96A19 550 aa11.77□□□□□ -0.53
DEPDC4-210ENST00000551642 MADDQ8WXG6 1647 aa11.76□□□□□ -0.53
DEPDC4-210ENST00000551642 DDX11L8A8MPP1 907 aa11.76□□□□□ -0.53
DEPDC4-210ENST00000551642 BARGINQ6ZT62 677 aa11.76□□□□□ -0.53
DEPDC4-210ENST00000551642 RDH13Q8NBN7 331 aa11.76□□□□□ -0.53
DEPDC4-210ENST00000551642 ERICH3Q5RHP9 1530 aa11.76□□□□□ -0.53
DEPDC4-210ENST00000551642 PPP1R18Q6NYC8 613 aa11.75□□□□□ -0.53
DEPDC4-210ENST00000551642 NKX2-3Q8TAU0 364 aa11.75□□□□□ -0.53
DEPDC4-210ENST00000551642 ZC3H15Q8WU90 426 aaKnown RBP11.75□□□□□ -0.53
DEPDC4-210ENST00000551642 NR1I2O75469 434 aa11.74□□□□□ -0.53
DEPDC4-210ENST00000551642 GCGRP47871 477 aa11.74□□□□□ -0.53
DEPDC4-210ENST00000551642 TMUB1Q9BVT8 246 aa11.74□□□□□ -0.53
DEPDC4-210ENST00000551642 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.74□□□□□ -0.53
DEPDC4-210ENST00000551642 BCORL1Q5H9F3 1711 aa11.74□□□□□ -0.53
DEPDC4-210ENST00000551642 KIAA0586Q9BVV6 1533 aa11.72□□□□□ -0.53
DEPDC4-210ENST00000551642 GGCXP38435 758 aa11.72□□□□□ -0.53
DEPDC4-210ENST00000551642 CD46P15529 392 aa11.7□□□□□ -0.54
DEPDC4-210ENST00000551642 ATP6V1AP38606 617 aa11.7□□□□□ -0.54
DEPDC4-210ENST00000551642 SCUBE3Q8IX30 993 aa11.7□□□□□ -0.54
DEPDC4-210ENST00000551642 RIMS1Q86UR5 1692 aaKnown RBP11.7□□□□□ -0.54
DEPDC4-210ENST00000551642 SLC24A1O60721 1099 aa11.69□□□□□ -0.54
DEPDC4-210ENST00000551642 CLCN1P35523 988 aa11.69□□□□□ -0.54
DEPDC4-210ENST00000551642 MDM2Q00987 491 aaPredicted RBP11.69□□□□□ -0.54
DEPDC4-210ENST00000551642 KRI1Q8N9T8 703 aaKnown RBP11.69□□□□□ -0.54
DEPDC4-210ENST00000551642 GPCPD1Q9NPB8 672 aa11.69□□□□□ -0.54
DEPDC4-210ENST00000551642 FUT2Q10981 343 aa11.68□□□□□ -0.54
DEPDC4-210ENST00000551642 MORN1Q5T089 497 aa11.68□□□□□ -0.54
DEPDC4-210ENST00000551642 STRCQ7RTU9 1775 aa11.68□□□□□ -0.54
DEPDC4-210ENST00000551642 PTPRGP23470 1445 aa11.68□□□□□ -0.54
DEPDC4-210ENST00000551642 ZCCHC11Q5TAX3 1644 aaKnown RBP11.68□□□□□ -0.54
DEPDC4-210ENST00000551642 ADH1BP00325 375 aa11.67□□□□□ -0.54
DEPDC4-210ENST00000551642 UHRF1BP1LA0JNW5 1464 aa11.66□□□□□ -0.54
DEPDC4-210ENST00000551642 PUS10Q3MIT2 529 aaKnown RBP11.66□□□□□ -0.54
DEPDC4-210ENST00000551642 V9GY48 417 aaPredicted RBP11.66□□□□□ -0.54
DEPDC4-210ENST00000551642 TLL1O43897 1013 aa11.65□□□□□ -0.54
DEPDC4-210ENST00000551642 GRIPAP1Q4V328 841 aa11.65□□□□□ -0.54
DEPDC4-210ENST00000551642 SALL2Q9Y467 1007 aaPredicted RBP11.65□□□□□ -0.54
DEPDC4-210ENST00000551642 TTBK1Q5TCY1 1321 aaPredicted RBP11.64□□□□□ -0.55
DEPDC4-210ENST00000551642 FAM217BQ9NTX9 383 aaPredicted RBP11.64□□□□□ -0.55
DEPDC4-210ENST00000551642 CFAP43Q8NDM7 1665 aa11.64□□□□□ -0.55
DEPDC4-210ENST00000551642 MAGI3Q5TCQ9 1506 aa11.64□□□□□ -0.55
DEPDC4-210ENST00000551642 KDM5BQ9UGL1 1544 aa11.64□□□□□ -0.55
DEPDC4-210ENST00000551642 WRNQ14191 1432 aaPredicted RBP eCLIP11.63□□□□□ -0.55
DEPDC4-210ENST00000551642 AMHR2Q16671 573 aa11.63□□□□□ -0.55
DEPDC4-210ENST00000551642 THAP11Q96EK4 314 aa11.62□□□□□ -0.55
DEPDC4-210ENST00000551642 IRX2Q9BZI1 471 aaPredicted RBP11.62□□□□□ -0.55
DEPDC4-210ENST00000551642 PRKD2Q9BZL6 878 aa11.62□□□□□ -0.55
DEPDC4-210ENST00000551642 BIVM-ERCC5R4GMW8 1640 aa11.61□□□□□ -0.55
DEPDC4-210ENST00000551642 RNF223E7ERA6 249 aa11.61□□□□□ -0.55
DEPDC4-210ENST00000551642 USP46P62068 366 aa11.61□□□□□ -0.55
DEPDC4-210ENST00000551642 ANKLE1Q8NAG6 615 aa11.61□□□□□ -0.55
DEPDC4-210ENST00000551642 SPSB2Q99619 263 aa11.61□□□□□ -0.55
DEPDC4-210ENST00000551642 SLC27A5Q9Y2P5 690 aa11.61□□□□□ -0.55
DEPDC4-210ENST00000551642 KDM4AO75164 1064 aa11.6□□□□□ -0.55
DEPDC4-210ENST00000551642 SLC6A16Q9GZN6 736 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms