RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 FAM160A2Q8N612 972 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-207ENST00000551486 IRF7Q92985 503 aa5.28□□□□□ -1.56
LIMA1-207ENST00000551486 NXF1Q9UBU9 619 aaKnown RBP5.28□□□□□ -1.56
LIMA1-207ENST00000551486 DDX11L8A8MPP1 907 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 TRIM32Q13049 653 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 Q3C1V9 767 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 MSS51Q4VC12 460 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 NPAS3Q8IXF0 933 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 MRGPRX2Q96LB1 330 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 SLC27A5Q9Y2P5 690 aa5.27□□□□□ -1.57
LIMA1-207ENST00000551486 J3QL48 77 aa5.26□□□□□ -1.57
LIMA1-207ENST00000551486 BRICD5Q6PL45 260 aa5.26□□□□□ -1.57
LIMA1-207ENST00000551486 METTL3Q86U44 580 aaKnown RBP5.26□□□□□ -1.57
LIMA1-207ENST00000551486 GCGRP47871 477 aa5.25□□□□□ -1.57
LIMA1-207ENST00000551486 HIC1Q14526 733 aa5.25□□□□□ -1.57
LIMA1-207ENST00000551486 HPS1Q92902 700 aa5.25□□□□□ -1.57
LIMA1-207ENST00000551486 PRDM9Q9NQV7 894 aa5.25□□□□□ -1.57
LIMA1-207ENST00000551486 GMPRP36959 345 aa5.23□□□□□ -1.57
LIMA1-207ENST00000551486 LCE2CQ5TA81 110 aa5.23□□□□□ -1.57
LIMA1-207ENST00000551486 RC3H1Q5TC82 1133 aaKnown RBP5.23□□□□□ -1.57
LIMA1-207ENST00000551486 CCDC24Q8N4L8 307 aa5.23□□□□□ -1.57
LIMA1-207ENST00000551486 KRTAP4-8Q9BYQ9 185 aa5.23□□□□□ -1.57
LIMA1-207ENST00000551486 ALDH1A1P00352 501 aa5.22□□□□□ -1.57
LIMA1-207ENST00000551486 MMP16P51512 607 aa5.22□□□□□ -1.57
LIMA1-207ENST00000551486 WNT7BP56706 349 aa5.22□□□□□ -1.57
LIMA1-207ENST00000551486 SMYD5Q6GMV2 418 aa5.21□□□□□ -1.58
LIMA1-207ENST00000551486 RNF19BQ6ZMZ0 732 aa5.21□□□□□ -1.58
LIMA1-207ENST00000551486 WASF2Q9Y6W5 498 aa5.21□□□□□ -1.58
LIMA1-207ENST00000551486 P3H3Q8IVL6 736 aa5.2□□□□□ -1.58
LIMA1-207ENST00000551486 KCNV2Q8TDN2 545 aa5.2□□□□□ -1.58
LIMA1-207ENST00000551486 USB1Q9BQ65 265 aaKnown RBP5.2□□□□□ -1.58
LIMA1-207ENST00000551486 H3BM21 787 aa5.19□□□□□ -1.58
LIMA1-207ENST00000551486 GNPATO15228 680 aa5.19□□□□□ -1.58
LIMA1-207ENST00000551486 CAPN5O15484 640 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-207ENST00000551486 DXOO77932 396 aaKnown RBP5.18□□□□□ -1.58
LIMA1-207ENST00000551486 VEGFBP49765 207 aa5.17□□□□□ -1.58
LIMA1-207ENST00000551486 EHBP1Q8NDI1 1231 aa5.17□□□□□ -1.58
LIMA1-207ENST00000551486 BMP1P13497 986 aa5.16□□□□□ -1.58
LIMA1-207ENST00000551486 SCARF1Q14162 830 aa5.16□□□□□ -1.58
LIMA1-207ENST00000551486 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-207ENST00000551486 SEMA3EO15041 775 aa5.15□□□□□ -1.59
LIMA1-207ENST00000551486 LORP23490 312 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-207ENST00000551486 USP46P62068 366 aa5.15□□□□□ -1.59
LIMA1-207ENST00000551486 SKOR1P84550 965 aa5.15□□□□□ -1.59
LIMA1-207ENST00000551486 TRIM46Q7Z4K8 759 aa5.15□□□□□ -1.59
LIMA1-207ENST00000551486 KDM4AO75164 1064 aa5.14□□□□□ -1.59
LIMA1-207ENST00000551486 XP32Q5T750 250 aa5.14□□□□□ -1.59
LIMA1-207ENST00000551486 NLRP7Q8WX94 980 aa5.14□□□□□ -1.59
LIMA1-207ENST00000551486 PLEKHG3A1L390 1219 aa5.13□□□□□ -1.59
LIMA1-207ENST00000551486 KCNMA1Q12791 1236 aa5.13□□□□□ -1.59
LIMA1-207ENST00000551486 ZFP42Q96MM3 310 aa5.13□□□□□ -1.59
LIMA1-207ENST00000551486 KRTAP9-2Q9BYQ4 174 aa5.13□□□□□ -1.59
LIMA1-207ENST00000551486 ERBB4Q15303 1308 aa5.13□□□□□ -1.59
LIMA1-207ENST00000551486 SIAH2O43255 324 aa5.12□□□□□ -1.59
LIMA1-207ENST00000551486 JUNDP17535 347 aa5.12□□□□□ -1.59
LIMA1-207ENST00000551486 RBM26Q5T8P6 1007 aaKnown RBP5.12□□□□□ -1.59
LIMA1-207ENST00000551486 TMEM151AQ8N4L1 468 aa5.12□□□□□ -1.59
LIMA1-207ENST00000551486 KCTD17Q8N5Z5 321 aa5.12□□□□□ -1.59
LIMA1-207ENST00000551486 RNF225M0QZC1 329 aaPredicted RBP5.11□□□□□ -1.59
LIMA1-207ENST00000551486 CD46P15529 392 aa5.11□□□□□ -1.59
LIMA1-207ENST00000551486 NUDT12Q9BQG2 462 aa5.11□□□□□ -1.59
LIMA1-207ENST00000551486 KRTAP9-6A0A140TA67 174 aa5.1□□□□□ -1.59
LIMA1-207ENST00000551486 GDF11O95390 407 aa5.1□□□□□ -1.59
LIMA1-207ENST00000551486 TSHZ2Q9NRE2 1034 aa5.1□□□□□ -1.59
LIMA1-207ENST00000551486 VSIG8P0DPA2 414 aa5.09□□□□□ -1.59
LIMA1-207ENST00000551486 MRPL14Q6P1L8 145 aaKnown RBP5.09□□□□□ -1.59
LIMA1-207ENST00000551486 PHOX2BQ99453 314 aa5.09□□□□□ -1.59
LIMA1-207ENST00000551486 TESPA1A2RU30 521 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-207ENST00000551486 MAN1A2O60476 641 aa5.08□□□□□ -1.6
LIMA1-207ENST00000551486 KRTAP1-3Q8IUG1 177 aa5.08□□□□□ -1.6
LIMA1-207ENST00000551486 PURBQ96QR8 312 aaKnown RBP5.08□□□□□ -1.6
LIMA1-207ENST00000551486 HOXA2O43364 376 aa5.07□□□□□ -1.6
LIMA1-207ENST00000551486 UPP2O95045 317 aa5.07□□□□□ -1.6
LIMA1-207ENST00000551486 VARSP26640 1264 aaKnown RBP5.07□□□□□ -1.6
LIMA1-207ENST00000551486 NNTQ13423 1086 aa5.07□□□□□ -1.6
LIMA1-207ENST00000551486 AMER1Q5JTC6 1135 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-207ENST00000551486 RETREG3Q86VR2 466 aa5.07□□□□□ -1.6
LIMA1-207ENST00000551486 ADH1CP00326 375 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 CCNYL3P0C7X3 344 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 MS4A1P11836 297 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 WDR4P57081 412 aaKnown RBP5.06□□□□□ -1.6
LIMA1-207ENST00000551486 SH3BP2P78314 561 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 RASSF7Q02833 373 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 PTCRAQ6ISU1 281 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-207ENST00000551486 NUTM1Q86Y26 1132 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 GPIHBP1Q8IV16 184 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 MPNDQ8N594 471 aa5.06□□□□□ -1.6
LIMA1-207ENST00000551486 GPR37O15354 613 aa5.05□□□□□ -1.6
LIMA1-207ENST00000551486 C6orf229H3BNL8 230 aa5.04□□□□□ -1.6
LIMA1-207ENST00000551486 IGHA1P01876 353 aa5.04□□□□□ -1.6
LIMA1-207ENST00000551486 HLA-CQ95604 372 aa5.04□□□□□ -1.6
LIMA1-207ENST00000551486 SOBPA7XYQ1 873 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 PPFIA3O75145 1194 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 TIMP2P16035 220 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 MDM2Q00987 491 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-207ENST00000551486 PTPRNQ16849 979 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 LINC01559Q495D7 138 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 KRI1Q8N9T8 703 aaKnown RBP5.03□□□□□ -1.6
LIMA1-207ENST00000551486 FAM174AQ8TBP5 190 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 BAP1Q92560 729 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms