RNA–Protein interactions for RNA: ENST00000551391.1

SCAF11-215, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-215ENST00000551391 SALL2Q9Y467 1007 aaPredicted RBP7.82□□□□□ -1.16
SCAF11-215ENST00000551391 POTECB2RU33 542 aa7.81□□□□□ -1.16
SCAF11-215ENST00000551391 ST8SIA5O15466 376 aa7.81□□□□□ -1.16
SCAF11-215ENST00000551391 FAM160A2Q8N612 972 aaPredicted RBP7.81□□□□□ -1.16
SCAF11-215ENST00000551391 AAASQ9NRG9 546 aa7.81□□□□□ -1.16
SCAF11-215ENST00000551391 BRICD5Q6PL45 260 aa7.8□□□□□ -1.16
SCAF11-215ENST00000551391 Q3C1V9 767 aa7.79□□□□□ -1.16
SCAF11-215ENST00000551391 TTC24A2A3L6 582 aaPredicted RBP7.78□□□□□ -1.16
SCAF11-215ENST00000551391 PHOX2BQ99453 314 aa7.78□□□□□ -1.16
SCAF11-215ENST00000551391 TRIM66O15016 1216 aa7.77□□□□□ -1.17
SCAF11-215ENST00000551391 AXIN1O15169 862 aa7.77□□□□□ -1.17
SCAF11-215ENST00000551391 MSS51Q4VC12 460 aa7.77□□□□□ -1.17
SCAF11-215ENST00000551391 CCDC102AQ96A19 550 aa7.77□□□□□ -1.17
SCAF11-215ENST00000551391 PRDM9Q9NQV7 894 aa7.77□□□□□ -1.17
SCAF11-215ENST00000551391 TOR4AQ9NXH8 423 aa7.77□□□□□ -1.17
SCAF11-215ENST00000551391 CRIPAKQ8N1N5 446 aa7.76□□□□□ -1.17
SCAF11-215ENST00000551391 AVPP01185 164 aa7.75□□□□□ -1.17
SCAF11-215ENST00000551391 CTC1Q2NKJ3 1217 aa7.75□□□□□ -1.17
SCAF11-215ENST00000551391 RNF19BQ6ZMZ0 732 aa7.75□□□□□ -1.17
SCAF11-215ENST00000551391 C11orf95C9JLR9 678 aaPredicted RBP7.74□□□□□ -1.17
SCAF11-215ENST00000551391 AMHR2Q16671 573 aa7.74□□□□□ -1.17
SCAF11-215ENST00000551391 KDM4AO75164 1064 aa7.73□□□□□ -1.17
SCAF11-215ENST00000551391 BRPF1P55201 1214 aaPredicted RBP7.73□□□□□ -1.17
SCAF11-215ENST00000551391 TREML4Q6UXN2 200 aa7.73□□□□□ -1.17
SCAF11-215ENST00000551391 WNT7AO00755 349 aa7.72□□□□□ -1.17
SCAF11-215ENST00000551391 CD46P15529 392 aa7.72□□□□□ -1.17
SCAF11-215ENST00000551391 PDE4DQ08499 809 aa7.72□□□□□ -1.17
SCAF11-215ENST00000551391 TRIM32Q13049 653 aa7.72□□□□□ -1.17
SCAF11-215ENST00000551391 CCDC24Q8N4L8 307 aa7.72□□□□□ -1.17
SCAF11-215ENST00000551391 SNIP1Q8TAD8 396 aaKnown RBP7.72□□□□□ -1.17
SCAF11-215ENST00000551391 USB1Q9BQ65 265 aaKnown RBP7.72□□□□□ -1.17
SCAF11-215ENST00000551391 DACH1Q9UI36 760 aa7.72□□□□□ -1.17
SCAF11-215ENST00000551391 SMCPP49901 116 aaPredicted RBP7.71□□□□□ -1.18
SCAF11-215ENST00000551391 GMPR2Q9P2T1 348 aaKnown RBP7.71□□□□□ -1.18
SCAF11-215ENST00000551391 MMP16P51512 607 aa7.7□□□□□ -1.18
SCAF11-215ENST00000551391 USP46P62068 366 aa7.7□□□□□ -1.18
SCAF11-215ENST00000551391 NEUROD2Q15784 382 aa7.7□□□□□ -1.18
SCAF11-215ENST00000551391 MDM2Q00987 491 aaPredicted RBP7.69□□□□□ -1.18
SCAF11-215ENST00000551391 MRGPRX2Q96LB1 330 aa7.69□□□□□ -1.18
SCAF11-215ENST00000551391 REPIN1Q9BWE0 567 aaKnown RBP7.69□□□□□ -1.18
SCAF11-215ENST00000551391 DXOO77932 396 aaKnown RBP7.68□□□□□ -1.18
SCAF11-215ENST00000551391 SMPD1P17405 629 aa7.67□□□□□ -1.18
SCAF11-215ENST00000551391 WFS1O76024 890 aa7.66□□□□□ -1.18
SCAF11-215ENST00000551391 CLCN1P35523 988 aa7.66□□□□□ -1.18
SCAF11-215ENST00000551391 PARP9Q8IXQ6 854 aa7.66□□□□□ -1.18
SCAF11-215ENST00000551391 J3QL48 77 aa7.65□□□□□ -1.18
SCAF11-215ENST00000551391 NUTM1Q86Y26 1132 aa7.65□□□□□ -1.18
SCAF11-215ENST00000551391 KDM4CQ9H3R0 1056 aa7.65□□□□□ -1.18
SCAF11-215ENST00000551391 SENP2Q9HC62 589 aa7.65□□□□□ -1.18
SCAF11-215ENST00000551391 GPCPD1Q9NPB8 672 aa7.65□□□□□ -1.18
SCAF11-215ENST00000551391 HOXA2O43364 376 aa7.64□□□□□ -1.19
SCAF11-215ENST00000551391 WNT7BP56706 349 aa7.64□□□□□ -1.19
SCAF11-215ENST00000551391 TTLL12Q14166 644 aaPredicted RBP7.64□□□□□ -1.19
SCAF11-215ENST00000551391 RC3H1Q5TC82 1133 aaKnown RBP7.64□□□□□ -1.19
SCAF11-215ENST00000551391 HLA-CQ95604 372 aa7.64□□□□□ -1.19
SCAF11-215ENST00000551391 GPBP1L1Q9HC44 474 aaPredicted RBP7.64□□□□□ -1.19
SCAF11-215ENST00000551391 ATP13A2Q9NQ11 1180 aa7.64□□□□□ -1.19
SCAF11-215ENST00000551391 TMEM132AQ24JP5 1023 aa7.63□□□□□ -1.19
SCAF11-215ENST00000551391 JUNDP17535 347 aa7.62□□□□□ -1.19
SCAF11-215ENST00000551391 LCE2AQ5TA79 106 aaPredicted RBP7.62□□□□□ -1.19
SCAF11-215ENST00000551391 GIGYF2Q6Y7W6 1299 aaKnown RBP7.62□□□□□ -1.19
SCAF11-215ENST00000551391 HPS1Q92902 700 aa7.61□□□□□ -1.19
SCAF11-215ENST00000551391 KIFC2Q96AC6 838 aa7.61□□□□□ -1.19
SCAF11-215ENST00000551391 ALDH1A1P00352 501 aa7.6□□□□□ -1.19
SCAF11-215ENST00000551391 GUCA2AQ02747 115 aa7.6□□□□□ -1.19
SCAF11-215ENST00000551391 SYMPKQ92797 1274 aaKnown RBP7.6□□□□□ -1.19
SCAF11-215ENST00000551391 NUDT12Q9BQG2 462 aa7.6□□□□□ -1.19
SCAF11-215ENST00000551391 FAM217BQ9NTX9 383 aaPredicted RBP7.6□□□□□ -1.19
SCAF11-215ENST00000551391 SNRPBP14678 240 aaKnown RBP7.59□□□□□ -1.19
SCAF11-215ENST00000551391 SSTR3P32745 418 aaPredicted RBP7.59□□□□□ -1.19
SCAF11-215ENST00000551391 SKOR1P84550 965 aa7.59□□□□□ -1.19
SCAF11-215ENST00000551391 NFX1Q12986 1120 aaKnown RBP7.59□□□□□ -1.19
SCAF11-215ENST00000551391 RETREG3Q86VR2 466 aa7.59□□□□□ -1.19
SCAF11-215ENST00000551391 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
SCAF11-215ENST00000551391 TRIM47Q96LD4 638 aa7.59□□□□□ -1.19
SCAF11-215ENST00000551391 C6orf229H3BNL8 230 aa7.58□□□□□ -1.2
SCAF11-215ENST00000551391 MS4A1P11836 297 aa7.58□□□□□ -1.2
SCAF11-215ENST00000551391 INSM1Q01101 510 aaPredicted RBP7.58□□□□□ -1.2
SCAF11-215ENST00000551391 EHBP1Q8NDI1 1231 aa7.58□□□□□ -1.2
SCAF11-215ENST00000551391 TERTO14746 1132 aaKnown RBP7.57□□□□□ -1.2
SCAF11-215ENST00000551391 FDX1P10109 184 aa7.57□□□□□ -1.2
SCAF11-215ENST00000551391 FAM117AQ9C073 453 aa7.57□□□□□ -1.2
SCAF11-215ENST00000551391 WASF2Q9Y6W5 498 aa7.57□□□□□ -1.2
SCAF11-215ENST00000551391 STK17AQ9UEE5 414 aa7.56□□□□□ -1.2
SCAF11-215ENST00000551391 WIPF1O43516 503 aa7.55□□□□□ -1.2
SCAF11-215ENST00000551391 SLC16A10Q8TF71 515 aa7.55□□□□□ -1.2
SCAF11-215ENST00000551391 PLEKHG3A1L390 1219 aa7.54□□□□□ -1.2
SCAF11-215ENST00000551391 PTCRAQ6ISU1 281 aaPredicted RBP7.54□□□□□ -1.2
SCAF11-215ENST00000551391 IL27Q8NEV9 243 aa7.54□□□□□ -1.2
SCAF11-215ENST00000551391 CAPN5O15484 640 aaPredicted RBP7.53□□□□□ -1.2
SCAF11-215ENST00000551391 CCNYL3P0C7X3 344 aa7.53□□□□□ -1.2
SCAF11-215ENST00000551391 BEGAINQ9BUH8 593 aa7.53□□□□□ -1.2
SCAF11-215ENST00000551391 GOPCQ9HD26 462 aa7.53□□□□□ -1.2
SCAF11-215ENST00000551391 PCDHGC3Q9UN70 934 aa7.52□□□□□ -1.21
SCAF11-215ENST00000551391 SIAH2O43255 324 aa7.51□□□□□ -1.21
SCAF11-215ENST00000551391 DIXDC1Q155Q3 683 aa7.51□□□□□ -1.21
SCAF11-215ENST00000551391 RSPH6AQ9H0K4 717 aa7.51□□□□□ -1.21
SCAF11-215ENST00000551391 SH3BP2P78314 561 aa7.5□□□□□ -1.21
SCAF11-215ENST00000551391 PTPRNQ16849 979 aa7.5□□□□□ -1.21
SCAF11-215ENST00000551391 SPIRE2Q8WWL2 714 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms