RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PPP1R15AO75807 674 aaPredicted RBP16.43■□□□□ 0.22
VPS29-208ENST00000550267 SPATA31A6Q5VVP1 1343 aa16.43■□□□□ 0.22
VPS29-208ENST00000550267 MEX3CQ5U5Q3 659 aaKnown RBP16.42■□□□□ 0.22
VPS29-208ENST00000550267 UPF1Q92900 1129 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS29-208ENST00000550267 TRIM52Q96A61 297 aa16.42■□□□□ 0.22
VPS29-208ENST00000550267 GCC2Q8IWJ2 1684 aa16.41■□□□□ 0.22
VPS29-208ENST00000550267 C14orf37Q86TY3 774 aa16.41■□□□□ 0.22
VPS29-208ENST00000550267 RPRD2Q5VT52 1461 aaKnown RBP16.41■□□□□ 0.22
VPS29-208ENST00000550267 NCOA3Q9Y6Q9 1424 aa16.4■□□□□ 0.22
VPS29-208ENST00000550267 TBX22Q9Y458 520 aa16.4■□□□□ 0.22
VPS29-208ENST00000550267 TMEM131LA2VDJ0 1609 aa16.4■□□□□ 0.22
VPS29-208ENST00000550267 ADGRL2O95490 1459 aa16.4■□□□□ 0.22
VPS29-208ENST00000550267 MYO5BQ9ULV0 1848 aa16.4■□□□□ 0.22
VPS29-208ENST00000550267 HDGFP51858 240 aaKnown RBP16.39■□□□□ 0.21
VPS29-208ENST00000550267 ZNF772Q68DY9 489 aaPredicted RBP16.39■□□□□ 0.21
VPS29-208ENST00000550267 AHDC1Q5TGY3 1603 aaPredicted RBP16.38■□□□□ 0.21
VPS29-208ENST00000550267 MAP3K13O43283 966 aa16.38■□□□□ 0.21
VPS29-208ENST00000550267 ATN1P54259 1190 aaPredicted RBP16.38■□□□□ 0.21
VPS29-208ENST00000550267 ZBTB47Q9UFB7 747 aaPredicted RBP16.38■□□□□ 0.21
VPS29-208ENST00000550267 ADAMTS13Q76LX8 1427 aa16.37■□□□□ 0.21
VPS29-208ENST00000550267 CHGAP10645 457 aaKnown RBP16.37■□□□□ 0.21
VPS29-208ENST00000550267 NUTM2DQ5VT03 806 aaPredicted RBP16.37■□□□□ 0.21
VPS29-208ENST00000550267 CADPS2Q86UW7 1296 aa16.37■□□□□ 0.21
VPS29-208ENST00000550267 SHPRHQ149N8 1683 aa16.37■□□□□ 0.21
VPS29-208ENST00000550267 ANKRD50Q9ULJ7 1429 aa16.36■□□□□ 0.21
VPS29-208ENST00000550267 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.36■□□□□ 0.21
VPS29-208ENST00000550267 ATF3P18847 181 aa16.36■□□□□ 0.21
VPS29-208ENST00000550267 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.35■□□□□ 0.21
VPS29-208ENST00000550267 C19orf44Q9H6X5 657 aa16.35■□□□□ 0.21
VPS29-208ENST00000550267 BMP2KQ9NSY1 1161 aaPredicted RBP16.35■□□□□ 0.21
VPS29-208ENST00000550267 NUTM2BA6NNL0 878 aaPredicted RBP16.34■□□□□ 0.21
VPS29-208ENST00000550267 NUTM2EB1AL46 878 aaPredicted RBP16.34■□□□□ 0.21
VPS29-208ENST00000550267 RXRBP28702 533 aa16.34■□□□□ 0.21
VPS29-208ENST00000550267 FKBP8Q14318 412 aa16.34■□□□□ 0.21
VPS29-208ENST00000550267 NUTM2AQ8IVF1 878 aaPredicted RBP16.34■□□□□ 0.21
VPS29-208ENST00000550267 DIP2AQ14689 1571 aa16.34■□□□□ 0.21
VPS29-208ENST00000550267 TIE1P35590 1138 aa16.33■□□□□ 0.2
VPS29-208ENST00000550267 BRINP3Q76B58 766 aa16.33■□□□□ 0.2
VPS29-208ENST00000550267 FAM50AQ14320 339 aaKnown RBP16.32■□□□□ 0.2
VPS29-208ENST00000550267 PIK3R4Q99570 1358 aa16.32■□□□□ 0.2
VPS29-208ENST00000550267 TRPC6Q9Y210 931 aa16.32■□□□□ 0.2
VPS29-208ENST00000550267 POTEJP0CG39 1038 aa16.31■□□□□ 0.2
VPS29-208ENST00000550267 NUBP1P53384 320 aa16.31■□□□□ 0.2
VPS29-208ENST00000550267 PTPRUQ92729 1446 aa16.3■□□□□ 0.2
VPS29-208ENST00000550267 AMOTL2Q9Y2J4 779 aa16.3■□□□□ 0.2
VPS29-208ENST00000550267 TRPM2O94759 1503 aa16.29■□□□□ 0.2
VPS29-208ENST00000550267 CDK12Q9NYV4 1490 aaPredicted RBP16.29■□□□□ 0.2
VPS29-208ENST00000550267 AFF2P51816 1311 aa16.29■□□□□ 0.2
VPS29-208ENST00000550267 SGIP1Q9BQI5 828 aa16.29■□□□□ 0.2
VPS29-208ENST00000550267 UNC13BO14795 1591 aa16.29■□□□□ 0.2
VPS29-208ENST00000550267 E9PCH4 1651 aa16.28■□□□□ 0.2
VPS29-208ENST00000550267 MAMSTRQ6ZN01 415 aa16.28■□□□□ 0.2
VPS29-208ENST00000550267 ASXL1Q8IXJ9 1541 aa16.28■□□□□ 0.2
VPS29-208ENST00000550267 DCCP43146 1447 aa16.26■□□□□ 0.19
VPS29-208ENST00000550267 SETD5Q9C0A6 1442 aa16.26■□□□□ 0.19
VPS29-208ENST00000550267 MST1RQ04912 1400 aa16.25■□□□□ 0.19
VPS29-208ENST00000550267 RGS12O14924 1447 aa16.24■□□□□ 0.19
VPS29-208ENST00000550267 NHSL1Q5SYE7 1610 aa16.23■□□□□ 0.19
VPS29-208ENST00000550267 XRN1Q8IZH2 1706 aaKnown RBP16.23■□□□□ 0.19
VPS29-208ENST00000550267 C8orf37Q96NL8 207 aa16.23■□□□□ 0.19
VPS29-208ENST00000550267 NRXN3Q9Y4C0 1643 aa16.23■□□□□ 0.19
VPS29-208ENST00000550267 DDX17Q92841 729 aaKnown RBP16.22■□□□□ 0.19
VPS29-208ENST00000550267 LRRC59Q96AG4 307 aaKnown RBP16.22■□□□□ 0.19
VPS29-208ENST00000550267 QTRT2Q9H974 415 aaKnown RBP16.22■□□□□ 0.19
VPS29-208ENST00000550267 IQGAP3Q86VI3 1631 aa16.22■□□□□ 0.19
VPS29-208ENST00000550267 TTLL13PA6NNM8 815 aa16.21■□□□□ 0.19
VPS29-208ENST00000550267 POTEFA5A3E0 1075 aa16.2■□□□□ 0.18
VPS29-208ENST00000550267 RBM6P78332 1123 aaKnown RBP16.2■□□□□ 0.18
VPS29-208ENST00000550267 PCDHB13Q9Y5F0 798 aa16.2■□□□□ 0.18
VPS29-208ENST00000550267 PNPLA6Q8IY17 1366 aa16.2■□□□□ 0.18
VPS29-208ENST00000550267 SETBP1Q9Y6X0 1596 aa16.2■□□□□ 0.18
VPS29-208ENST00000550267 METP08581 1390 aa16.19■□□□□ 0.18
VPS29-208ENST00000550267 NUP155O75694 1391 aa16.18■□□□□ 0.18
VPS29-208ENST00000550267 FAM212AQ96EL1 285 aa16.18■□□□□ 0.18
VPS29-208ENST00000550267 SCUBE2Q9NQ36 999 aa16.17■□□□□ 0.18
VPS29-208ENST00000550267 ADGRL3Q9HAR2 1447 aa16.17■□□□□ 0.18
VPS29-208ENST00000550267 ROCK1Q13464 1354 aa16.16■□□□□ 0.18
VPS29-208ENST00000550267 ADAMTS2O95450 1211 aa16.16■□□□□ 0.18
VPS29-208ENST00000550267 ZNF326Q5BKZ1 582 aaKnown RBP16.15■□□□□ 0.18
VPS29-208ENST00000550267 NALCNQ8IZF0 1738 aa16.15■□□□□ 0.18
VPS29-208ENST00000550267 NGLY1Q96IV0 654 aa16.14■□□□□ 0.17
VPS29-208ENST00000550267 POTEMA6NI47 508 aa16.13■□□□□ 0.17
VPS29-208ENST00000550267 C1orf167Q5SNV9 1468 aa16.12■□□□□ 0.17
VPS29-208ENST00000550267 FBXO3Q9UK99 471 aa16.12■□□□□ 0.17
VPS29-208ENST00000550267 ATAD2Q6PL18 1390 aa16.12■□□□□ 0.17
VPS29-208ENST00000550267 SPHKAPQ2M3C7 1700 aa16.11■□□□□ 0.17
VPS29-208ENST00000550267 ITGAEP38570 1179 aa16.1■□□□□ 0.17
VPS29-208ENST00000550267 IER5LQ5T953 404 aa16.1■□□□□ 0.17
VPS29-208ENST00000550267 IFNL1Q8IU54 200 aa16.1■□□□□ 0.17
VPS29-208ENST00000550267 USP21Q9UK80 565 aa16.1■□□□□ 0.17
VPS29-208ENST00000550267 TRIM35Q9UPQ4 493 aa16.1■□□□□ 0.17
VPS29-208ENST00000550267 NEXMIFQ5QGS0 1516 aa16.09■□□□□ 0.17
VPS29-208ENST00000550267 SEC24BO95487 1268 aa16.09■□□□□ 0.17
VPS29-208ENST00000550267 POTEGQ6S5H5 508 aa16.09■□□□□ 0.17
VPS29-208ENST00000550267 ORAI2Q96SN7 254 aa16.09■□□□□ 0.17
VPS29-208ENST00000550267 LAMC1P11047 1609 aa16.08■□□□□ 0.17
VPS29-208ENST00000550267 PLSCR2Q9NRY7 297 aa16.08■□□□□ 0.16
VPS29-208ENST00000550267 COLQQ9Y215 455 aaPredicted RBP16.08■□□□□ 0.16
VPS29-208ENST00000550267 SOS2Q07890 1332 aaPredicted RBP16.08■□□□□ 0.16
VPS29-208ENST00000550267 TRPC5Q9UL62 973 aaPredicted RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms