RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 PCDHGA10Q9Y5H3 936 aa5.46□□□□□ -1.54
PTPRB-207ENST00000549400 MAPKBP1O60336 1514 aa5.46□□□□□ -1.54
PTPRB-207ENST00000549400 SYNJ2O15056 1496 aa5.45□□□□□ -1.54
PTPRB-207ENST00000549400 MAGI3Q5TCQ9 1506 aa5.45□□□□□ -1.54
PTPRB-207ENST00000549400 NBR1Q14596 966 aa5.45□□□□□ -1.54
PTPRB-207ENST00000549400 PAXIP1Q6ZW49 1069 aaPredicted RBP5.45□□□□□ -1.54
PTPRB-207ENST00000549400 CCER1Q8TC90 406 aaPredicted RBP5.45□□□□□ -1.54
PTPRB-207ENST00000549400 ZNF775Q96BV0 537 aaPredicted RBP5.45□□□□□ -1.54
PTPRB-207ENST00000549400 LRCH3Q96II8 777 aa5.45□□□□□ -1.54
PTPRB-207ENST00000549400 FGD6Q6ZV73 1430 aa5.45□□□□□ -1.54
PTPRB-207ENST00000549400 EPRSP07814 1512 aaKnown RBP5.44□□□□□ -1.54
PTPRB-207ENST00000549400 MYOM3Q5VTT5 1437 aa5.44□□□□□ -1.54
PTPRB-207ENST00000549400 TYW1BQ6NUM6 668 aa5.44□□□□□ -1.54
PTPRB-207ENST00000549400 SUPT6HQ7KZ85 1726 aaKnown RBP5.44□□□□□ -1.54
PTPRB-207ENST00000549400 RGS22Q8NE09 1264 aa5.44□□□□□ -1.54
PTPRB-207ENST00000549400 NCOA2Q15596 1464 aa5.44□□□□□ -1.54
PTPRB-207ENST00000549400 CEP170Q5SW79 1584 aa5.43□□□□□ -1.54
PTPRB-207ENST00000549400 HFM1A2PYH4 1435 aa5.43□□□□□ -1.54
PTPRB-207ENST00000549400 MIA2Q96PC5 1412 aa5.43□□□□□ -1.54
PTPRB-207ENST00000549400 ONECUT3O60422 494 aaPredicted RBP5.43□□□□□ -1.54
PTPRB-207ENST00000549400 BRPF1P55201 1214 aaPredicted RBP5.43□□□□□ -1.54
PTPRB-207ENST00000549400 PPP4CP60510 307 aa5.43□□□□□ -1.54
PTPRB-207ENST00000549400 FBXW7Q969H0 707 aa5.43□□□□□ -1.54
PTPRB-207ENST00000549400 SALL2Q9Y467 1007 aaPredicted RBP5.43□□□□□ -1.54
PTPRB-207ENST00000549400 ADCY10Q96PN6 1610 aa5.42□□□□□ -1.54
PTPRB-207ENST00000549400 FAM98CQ17RN3 349 aaKnown RBP5.42□□□□□ -1.54
PTPRB-207ENST00000549400 LARP6Q9BRS8 491 aaKnown RBP5.42□□□□□ -1.54
PTPRB-207ENST00000549400 NUP153P49790 1475 aaKnown RBP5.42□□□□□ -1.54
PTPRB-207ENST00000549400 RAB3GAP2Q9H2M9 1393 aa5.42□□□□□ -1.54
PTPRB-207ENST00000549400 SETD5Q9C0A6 1442 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 ZBTB7CA1YPR0 619 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 SOCS7O14512 581 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 PHF14O94880 888 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 PPP1R18Q6NYC8 613 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 DDX27Q96GQ7 796 aaKnown RBP5.41□□□□□ -1.54
PTPRB-207ENST00000549400 ZMYND15Q9H091 742 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 RSPH6AQ9H0K4 717 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 PDZRN3Q9UPQ7 1066 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 V9GY48 417 aaPredicted RBP5.41□□□□□ -1.54
PTPRB-207ENST00000549400 NCKAP5LQ9HCH0 1330 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 RAPGEF6Q8TEU7 1601 aa5.41□□□□□ -1.54
PTPRB-207ENST00000549400 GCC2Q8IWJ2 1684 aa5.4□□□□□ -1.54
PTPRB-207ENST00000549400 ERCC6Q03468 1493 aa5.4□□□□□ -1.54
PTPRB-207ENST00000549400 TRIM6-TRIM34B2RNG4 842 aa5.4□□□□□ -1.54
PTPRB-207ENST00000549400 NKX1-1Q15270 411 aaPredicted RBP5.4□□□□□ -1.54
PTPRB-207ENST00000549400 C6orf132Q5T0Z8 1188 aa5.4□□□□□ -1.54
PTPRB-207ENST00000549400 PTPN23Q9H3S7 1636 aa5.4□□□□□ -1.55
PTPRB-207ENST00000549400 PTPRKQ15262 1439 aa5.4□□□□□ -1.55
PTPRB-207ENST00000549400 ABCA8O94911 1581 aa5.39□□□□□ -1.55
PTPRB-207ENST00000549400 SHROOM2Q13796 1616 aa5.39□□□□□ -1.55
PTPRB-207ENST00000549400 TICAM2Q86XR7 235 aa5.39□□□□□ -1.55
PTPRB-207ENST00000549400 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.39□□□□□ -1.55
PTPRB-207ENST00000549400 MTUS2Q5JR59 1369 aa5.39□□□□□ -1.55
PTPRB-207ENST00000549400 NAIPQ13075 1403 aa5.39□□□□□ -1.55
PTPRB-207ENST00000549400 AAMPQ13685 434 aa5.38□□□□□ -1.55
PTPRB-207ENST00000549400 TJAP1Q5JTD0 557 aa5.38□□□□□ -1.55
PTPRB-207ENST00000549400 RBM33Q96EV2 1170 aaKnown RBP5.38□□□□□ -1.55
PTPRB-207ENST00000549400 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.38□□□□□ -1.55
PTPRB-207ENST00000549400 BRPF3Q9ULD4 1205 aa5.38□□□□□ -1.55
PTPRB-207ENST00000549400 ROCK1Q13464 1354 aa5.38□□□□□ -1.55
PTPRB-207ENST00000549400 UACAQ9BZF9 1416 aa5.38□□□□□ -1.55
PTPRB-207ENST00000549400 MFSD10Q14728 455 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 PACS2Q86VP3 889 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 MTRQ99707 1265 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 EPAS1Q99814 870 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 IL21Q9HBE4 155 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 EMILIN3Q9NT22 766 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 DENND4BO75064 1496 aaPredicted RBP5.37□□□□□ -1.55
PTPRB-207ENST00000549400 CDK13Q14004 1512 aaKnown RBP5.37□□□□□ -1.55
PTPRB-207ENST00000549400 KDM5BQ9UGL1 1544 aa5.37□□□□□ -1.55
PTPRB-207ENST00000549400 DNMT1P26358 1616 aaKnown RBP5.37□□□□□ -1.55
PTPRB-207ENST00000549400 TMED8Q6PL24 325 aaPredicted RBP5.36□□□□□ -1.55
PTPRB-207ENST00000549400 ZNF428Q96B54 188 aa5.36□□□□□ -1.55
PTPRB-207ENST00000549400 TROQ12816 1431 aaPredicted RBP5.36□□□□□ -1.55
PTPRB-207ENST00000549400 ADGRL2O95490 1459 aa5.36□□□□□ -1.55
PTPRB-207ENST00000549400 ITSN2Q9NZM3 1697 aa5.35□□□□□ -1.55
PTPRB-207ENST00000549400 ABCC10Q5T3U5 1492 aa5.35□□□□□ -1.55
PTPRB-207ENST00000549400 SHANK2Q9UPX8 1470 aa5.35□□□□□ -1.55
PTPRB-207ENST00000549400 ZNF516Q92618 1163 aa5.35□□□□□ -1.55
PTPRB-207ENST00000549400 CCDC136Q96JN2 1154 aa5.35□□□□□ -1.55
PTPRB-207ENST00000549400 CARMIL2Q6F5E8 1435 aa5.34□□□□□ -1.55
PTPRB-207ENST00000549400 GGCXP38435 758 aa5.34□□□□□ -1.55
PTPRB-207ENST00000549400 RBM10P98175 930 aaKnown RBP5.34□□□□□ -1.55
PTPRB-207ENST00000549400 SAMD7Q7Z3H4 446 aa5.34□□□□□ -1.55
PTPRB-207ENST00000549400 P3H3Q8IVL6 736 aa5.34□□□□□ -1.55
PTPRB-207ENST00000549400 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.34□□□□□ -1.55
PTPRB-207ENST00000549400 CROCC2H7BZ55 1655 aa5.34□□□□□ -1.56
PTPRB-207ENST00000549400 CLASP1Q7Z460 1538 aa5.33□□□□□ -1.56
PTPRB-207ENST00000549400 GPATCH8Q9UKJ3 1502 aaKnown RBP5.33□□□□□ -1.56
PTPRB-207ENST00000549400 PLB1Q6P1J6 1458 aa5.33□□□□□ -1.56
PTPRB-207ENST00000549400 GTPBP6O43824 516 aaPredicted RBP5.33□□□□□ -1.56
PTPRB-207ENST00000549400 RNF40O75150 1001 aa5.33□□□□□ -1.56
PTPRB-207ENST00000549400 CC2D2BQ6DHV5 1058 aa5.33□□□□□ -1.56
PTPRB-207ENST00000549400 ARID3AQ99856 593 aa5.33□□□□□ -1.56
PTPRB-207ENST00000549400 ABCC5O15440 1437 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 DAPK1P53355 1430 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 SMAPO00193 183 aa5.32□□□□□ -1.56
PTPRB-207ENST00000549400 DEKP35659 375 aaKnown RBP5.32□□□□□ -1.56
PTPRB-207ENST00000549400 HDGFP51858 240 aaKnown RBP5.32□□□□□ -1.56
PTPRB-207ENST00000549400 IRX6P78412 446 aaPredicted RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms