RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 EFCAB6Q5THR3 1501 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 MAST1Q9Y2H9 1570 aa10.47□□□□□ -0.73
LIMA1-204ENST00000549064 FGD6Q6ZV73 1430 aa10.46□□□□□ -0.74
LIMA1-204ENST00000549064 CDK12Q9NYV4 1490 aaPredicted RBP10.46□□□□□ -0.74
LIMA1-204ENST00000549064 CHD2O14647 1828 aaKnown RBP10.45□□□□□ -0.74
LIMA1-204ENST00000549064 ZNF467Q7Z7K2 595 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-204ENST00000549064 AHDC1Q5TGY3 1603 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-204ENST00000549064 RGS12O14924 1447 aa10.44□□□□□ -0.74
LIMA1-204ENST00000549064 ARHGAP31Q2M1Z3 1444 aa10.44□□□□□ -0.74
LIMA1-204ENST00000549064 NUTM2BA6NNL0 878 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-204ENST00000549064 NUTM2EB1AL46 878 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-204ENST00000549064 NUTM2AQ8IVF1 878 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-204ENST00000549064 PDAP1Q13442 181 aaKnown RBP10.43□□□□□ -0.74
LIMA1-204ENST00000549064 CHADLQ6NUI6 762 aa10.43□□□□□ -0.74
LIMA1-204ENST00000549064 PCDHB8Q9UN66 801 aa10.43□□□□□ -0.74
LIMA1-204ENST00000549064 PCDHB13Q9Y5F0 798 aa10.43□□□□□ -0.74
LIMA1-204ENST00000549064 DIP2AQ14689 1571 aa10.43□□□□□ -0.74
LIMA1-204ENST00000549064 MYO5BQ9ULV0 1848 aa10.42□□□□□ -0.74
LIMA1-204ENST00000549064 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-204ENST00000549064 AFF2P51816 1311 aa10.42□□□□□ -0.74
LIMA1-204ENST00000549064 LMOD2Q6P5Q4 547 aa10.42□□□□□ -0.74
LIMA1-204ENST00000549064 SETBP1Q9Y6X0 1596 aa10.42□□□□□ -0.74
LIMA1-204ENST00000549064 IDI1Q13907 227 aa10.41□□□□□ -0.74
LIMA1-204ENST00000549064 ADGRB3O60242 1522 aa10.41□□□□□ -0.74
LIMA1-204ENST00000549064 DUOX2Q9NRD8 1548 aa10.41□□□□□ -0.74
LIMA1-204ENST00000549064 TMEM132AQ24JP5 1023 aa10.4□□□□□ -0.74
LIMA1-204ENST00000549064 NUTM2DQ5VT03 806 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-204ENST00000549064 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIMA1-204ENST00000549064 MFRPQ9BY79 579 aa10.39□□□□□ -0.75
LIMA1-204ENST00000549064 C14orf37Q86TY3 774 aa10.38□□□□□ -0.75
LIMA1-204ENST00000549064 PSEN1P49768 467 aa10.37□□□□□ -0.75
LIMA1-204ENST00000549064 QTRT2Q9H974 415 aaKnown RBP10.37□□□□□ -0.75
LIMA1-204ENST00000549064 GCC2Q8IWJ2 1684 aa10.37□□□□□ -0.75
LIMA1-204ENST00000549064 RBM6P78332 1123 aaKnown RBP10.36□□□□□ -0.75
LIMA1-204ENST00000549064 C8orf37Q96NL8 207 aa10.36□□□□□ -0.75
LIMA1-204ENST00000549064 CROCC2H7BZ55 1655 aa10.36□□□□□ -0.75
LIMA1-204ENST00000549064 KIF15Q9NS87 1388 aa10.36□□□□□ -0.75
LIMA1-204ENST00000549064 ZFYVE9O95405 1425 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 NOS1P29475 1434 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 ERBINQ96RT1 1412 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 BRINP3Q76B58 766 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 ZRANB1Q9UGI0 708 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 FARP1Q9Y4F1 1045 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-204ENST00000549064 NHSL1Q5SYE7 1610 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 PLEKHG1Q9ULL1 1385 aa10.35□□□□□ -0.75
LIMA1-204ENST00000549064 ATF3P18847 181 aa10.34□□□□□ -0.75
LIMA1-204ENST00000549064 RRP7BPQ9NSQ0 103 aa10.34□□□□□ -0.75
LIMA1-204ENST00000549064 NCOA3Q9Y6Q9 1424 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 LMTK2Q8IWU2 1503 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 ASXL1Q8IXJ9 1541 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 PPP1R37O75864 691 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 C19orf44Q9H6X5 657 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 KANK1Q14678 1352 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 ATAD2Q6PL18 1390 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 SETD5Q9C0A6 1442 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 RIMS2Q9UQ26 1411 aa10.33□□□□□ -0.76
LIMA1-204ENST00000549064 PPP1R15AO75807 674 aaPredicted RBP10.32□□□□□ -0.76
LIMA1-204ENST00000549064 CCDC61Q9Y6R9 512 aa10.32□□□□□ -0.76
LIMA1-204ENST00000549064 TMEM131LA2VDJ0 1609 aa10.32□□□□□ -0.76
LIMA1-204ENST00000549064 MYOM3Q5VTT5 1437 aa10.32□□□□□ -0.76
LIMA1-204ENST00000549064 ADAMTS13Q76LX8 1427 aa10.32□□□□□ -0.76
LIMA1-204ENST00000549064 ZNF579Q8NAF0 562 aaKnown RBP10.31□□□□□ -0.76
LIMA1-204ENST00000549064 DDX17Q92841 729 aaKnown RBP10.31□□□□□ -0.76
LIMA1-204ENST00000549064 TBX22Q9Y458 520 aa10.31□□□□□ -0.76
LIMA1-204ENST00000549064 PNPLA6Q8IY17 1366 aa10.3□□□□□ -0.76
LIMA1-204ENST00000549064 ADAMTS2O95450 1211 aa10.3□□□□□ -0.76
LIMA1-204ENST00000549064 ABCC5O15440 1437 aa10.3□□□□□ -0.76
LIMA1-204ENST00000549064 NGLY1Q96IV0 654 aa10.29□□□□□ -0.76
LIMA1-204ENST00000549064 MST1RQ04912 1400 aa10.29□□□□□ -0.76
LIMA1-204ENST00000549064 PTPRUQ92729 1446 aa10.29□□□□□ -0.76
LIMA1-204ENST00000549064 EFCAB3Q8N7B9 438 aa10.28□□□□□ -0.76
LIMA1-204ENST00000549064 LRRC59Q96AG4 307 aaKnown RBP10.28□□□□□ -0.76
LIMA1-204ENST00000549064 SLC52A1Q9NWF4 448 aa10.28□□□□□ -0.76
LIMA1-204ENST00000549064 KANK4Q5T7N3 995 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-204ENST00000549064 ERICH6Q7L0X2 663 aa10.27□□□□□ -0.77
LIMA1-204ENST00000549064 ARHGEF1Q92888 912 aaKnown RBP10.27□□□□□ -0.77
LIMA1-204ENST00000549064 EP400Q96L91 3159 aa10.27□□□□□ -0.77
LIMA1-204ENST00000549064 TRPM2O94759 1503 aa10.27□□□□□ -0.77
LIMA1-204ENST00000549064 PTPN23Q9H3S7 1636 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 DCCP43146 1447 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 DAPK1P53355 1430 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 BRPF1P55201 1214 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-204ENST00000549064 E2F4Q16254 413 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 FBXO22Q8NEZ5 403 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 USP21Q9UK80 565 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 PHF8Q9UPP1 1060 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 AMOTL2Q9Y2J4 779 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 XRN1Q8IZH2 1706 aaKnown RBP10.26□□□□□ -0.77
LIMA1-204ENST00000549064 PIK3R4Q99570 1358 aa10.26□□□□□ -0.77
LIMA1-204ENST00000549064 LRP5O75197 1615 aa10.25□□□□□ -0.77
LIMA1-204ENST00000549064 IFNL1Q8IU54 200 aa10.25□□□□□ -0.77
LIMA1-204ENST00000549064 ZC3H15Q8WU90 426 aaKnown RBP10.25□□□□□ -0.77
LIMA1-204ENST00000549064 CABP2Q9NPB3 220 aa10.25□□□□□ -0.77
LIMA1-204ENST00000549064 CHIC2Q9UKJ5 165 aa10.25□□□□□ -0.77
LIMA1-204ENST00000549064 UNC13BO14795 1591 aa10.25□□□□□ -0.77
LIMA1-204ENST00000549064 ATRNO75882 1429 aa10.24□□□□□ -0.77
LIMA1-204ENST00000549064 NALCNQ8IZF0 1738 aa10.24□□□□□ -0.77
LIMA1-204ENST00000549064 SEMA3EO15041 775 aa10.24□□□□□ -0.77
LIMA1-204ENST00000549064 PRKAR2AP13861 404 aaKnown RBP10.24□□□□□ -0.77
LIMA1-204ENST00000549064 HDGFP51858 240 aaKnown RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms