RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 PCDHB15Q9Y5E8 787 aa18.03■□□□□ 0.48
RAPGEF3-216ENST00000547856 E9PCH4 1651 aa18.03■□□□□ 0.48
RAPGEF3-216ENST00000547856 VIRMAQ69YN4 1812 aaKnown RBP18.02■□□□□ 0.48
RAPGEF3-216ENST00000547856 ZBTB7CA1YPR0 619 aa18.02■□□□□ 0.47
RAPGEF3-216ENST00000547856 ZNF692Q9BU19 519 aaPredicted RBP18.02■□□□□ 0.47
RAPGEF3-216ENST00000547856 PPP2R1AP30153 589 aa18.01■□□□□ 0.47
RAPGEF3-216ENST00000547856 TNNQ9UQP3 1299 aa18.01■□□□□ 0.47
RAPGEF3-216ENST00000547856 DISP3Q9P2K9 1392 aa18.01■□□□□ 0.47
RAPGEF3-216ENST00000547856 ATP10AO60312 1499 aa18.01■□□□□ 0.47
RAPGEF3-216ENST00000547856 MAP7D2Q96T17 732 aa18.01■□□□□ 0.47
RAPGEF3-216ENST00000547856 SMAP1Q8IYB5 467 aaPredicted RBP18■□□□□ 0.47
RAPGEF3-216ENST00000547856 PDE4CQ08493 712 aa18■□□□□ 0.47
RAPGEF3-216ENST00000547856 INSRP06213 1382 aa18■□□□□ 0.47
RAPGEF3-216ENST00000547856 SPAG9O60271 1321 aaKnown RBP17.99■□□□□ 0.47
RAPGEF3-216ENST00000547856 SLC24A1O60721 1099 aa17.99■□□□□ 0.47
RAPGEF3-216ENST00000547856 NKTRP30414 1462 aaKnown RBP17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 ARAP3Q8WWN8 1544 aa17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 GPRASP1Q5JY77 1395 aa17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 PDE3AQ14432 1141 aa17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 PPP1R9BQ96SB3 815 aa17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 BCL2L13Q9BXK5 485 aa17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 ZFYVE16Q7Z3T8 1539 aa17.98■□□□□ 0.47
RAPGEF3-216ENST00000547856 TRMT2AQ8IZ69 625 aaKnown RBP17.97■□□□□ 0.47
RAPGEF3-216ENST00000547856 GBP4Q96PP9 640 aa17.97■□□□□ 0.47
RAPGEF3-216ENST00000547856 WDR7Q9Y4E6 1490 aa17.97■□□□□ 0.47
RAPGEF3-216ENST00000547856 PMFBP1Q8TBY8 1022 aa17.97■□□□□ 0.47
RAPGEF3-216ENST00000547856 HSP90AB1P08238 724 aaKnown RBP17.95■□□□□ 0.46
RAPGEF3-216ENST00000547856 RTEL1-TNFRSF6BF6WH68 1400 aa17.95■□□□□ 0.46
RAPGEF3-216ENST00000547856 PRDM15P57071 1507 aaPredicted RBP17.95■□□□□ 0.46
RAPGEF3-216ENST00000547856 RLBP1P12271 317 aa17.95■□□□□ 0.46
RAPGEF3-216ENST00000547856 BBXQ8WY36 941 aaPredicted RBP17.95■□□□□ 0.46
RAPGEF3-216ENST00000547856 KNSTRNQ9Y448 316 aa17.95■□□□□ 0.46
RAPGEF3-216ENST00000547856 E9PSI1 815 aa17.94■□□□□ 0.46
RAPGEF3-216ENST00000547856 LAMC1P11047 1609 aa17.94■□□□□ 0.46
RAPGEF3-216ENST00000547856 ABCA9Q8IUA7 1624 aa17.94■□□□□ 0.46
RAPGEF3-216ENST00000547856 NCLP19338 710 aaKnown RBP17.94■□□□□ 0.46
RAPGEF3-216ENST00000547856 SKOR2Q2VWA4 1001 aaPredicted RBP17.94■□□□□ 0.46
RAPGEF3-216ENST00000547856 NEUROD2Q15784 382 aa17.93■□□□□ 0.46
RAPGEF3-216ENST00000547856 FANCAO15360 1455 aa17.93■□□□□ 0.46
RAPGEF3-216ENST00000547856 TESK2Q96S53 571 aa17.93■□□□□ 0.46
RAPGEF3-216ENST00000547856 TERF1P54274 439 aa17.92■□□□□ 0.46
RAPGEF3-216ENST00000547856 DDX49Q9Y6V7 483 aaKnown RBP17.92■□□□□ 0.46
RAPGEF3-216ENST00000547856 EIF2AK4Q9P2K8 1649 aaKnown RBP17.92■□□□□ 0.46
RAPGEF3-216ENST00000547856 JARID2Q92833 1246 aaPredicted RBP17.91■□□□□ 0.46
RAPGEF3-216ENST00000547856 RWDD1Q9H446 243 aaPredicted RBP17.91■□□□□ 0.46
RAPGEF3-216ENST00000547856 DDIT3P35638 169 aa17.9■□□□□ 0.46
RAPGEF3-216ENST00000547856 TMF1P82094 1093 aa17.9■□□□□ 0.46
RAPGEF3-216ENST00000547856 DEPDC5O75140 1603 aa17.9■□□□□ 0.46
RAPGEF3-216ENST00000547856 INO80Q9ULG1 1556 aaPredicted RBP17.9■□□□□ 0.46
RAPGEF3-216ENST00000547856 RAB3GAP1Q15042 981 aa17.9■□□□□ 0.46
RAPGEF3-216ENST00000547856 ATP7AQ04656 1500 aa17.9■□□□□ 0.46
RAPGEF3-216ENST00000547856 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.89■□□□□ 0.45
RAPGEF3-216ENST00000547856 COL17A1Q9UMD9 1497 aaPredicted RBP17.89■□□□□ 0.45
RAPGEF3-216ENST00000547856 SSFA2P28290 1259 aa17.89■□□□□ 0.45
RAPGEF3-216ENST00000547856 DMTNQ08495 405 aa17.89■□□□□ 0.45
RAPGEF3-216ENST00000547856 SPHKAPQ2M3C7 1700 aa17.88■□□□□ 0.45
RAPGEF3-216ENST00000547856 ASXL2Q76L83 1435 aa17.88■□□□□ 0.45
RAPGEF3-216ENST00000547856 BCL11BQ9C0K0 894 aaPredicted RBP17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 NOL7Q9UMY1 257 aaKnown RBP17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 TRPM2O94759 1503 aa17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 RNF17Q9BXT8 1623 aaKnown RBP17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 DYNC1I1O14576 645 aa17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 TSC1Q92574 1164 aa17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 SCAPERQ9BY12 1400 aa17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 ADGRL1O94910 1474 aa17.87■□□□□ 0.45
RAPGEF3-216ENST00000547856 CBX1P83916 185 aa17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 CEP152O94986 1710 aa17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 ZSCAN20P17040 1043 aaPredicted RBP17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 RRP7AQ9Y3A4 280 aaKnown RBP17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 CLTCL1P53675 1640 aa17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 MADDQ8WXG6 1647 aa17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 PTPRTO14522 1441 aa17.86■□□□□ 0.45
RAPGEF3-216ENST00000547856 MTERF4Q7Z6M4 381 aaKnown RBP17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 TET3O43151 1660 aa17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 CAVIN1Q6NZI2 390 aaKnown RBP17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 SMC5Q8IY18 1101 aa17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 CCDC94Q9BW85 323 aaPredicted RBP17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 KIF3BO15066 747 aa17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 ZNF500O60304 480 aaPredicted RBP17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 CD2BP2O95400 341 aaKnown RBP17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 RBSNQ9H1K0 784 aa17.85■□□□□ 0.45
RAPGEF3-216ENST00000547856 GOLGA6L22H0YM25 854 aa17.84■□□□□ 0.45
RAPGEF3-216ENST00000547856 VWDEQ8N2E2 1590 aa17.84■□□□□ 0.45
RAPGEF3-216ENST00000547856 RARSP54136 660 aaKnown RBP17.83■□□□□ 0.44
RAPGEF3-216ENST00000547856 GTF2E1P29083 439 aaPredicted RBP17.83■□□□□ 0.44
RAPGEF3-216ENST00000547856 AMER1Q5JTC6 1135 aaPredicted RBP17.83■□□□□ 0.44
RAPGEF3-216ENST00000547856 SASS6Q6UVJ0 657 aa17.82■□□□□ 0.44
RAPGEF3-216ENST00000547856 NCOA3Q9Y6Q9 1424 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 MROH1Q8NDA8 1641 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 TNNT2P45379 298 aaPredicted RBP17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 PPP4R3BQ5MIZ7 849 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 UTP14CQ5TAP6 766 aaKnown RBP17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 MCTP1Q6DN14 999 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 RBM42Q9BTD8 480 aaKnown RBP17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 CIZ1Q9ULV3 898 aaPredicted RBP17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 FAM177BA6PVY3 158 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 KLHL40Q2TBA0 621 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 WWC1Q8IX03 1113 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 ZKSCAN5Q9Y2L8 839 aa17.81■□□□□ 0.44
RAPGEF3-216ENST00000547856 DNTTIP2Q5QJE6 756 aaKnown RBP17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms