RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SETBP1Q9Y6X0 1596 aa14.69□□□□□ -0.06
CUX1-212ENST00000547394 RNF123Q5XPI4 1314 aa14.69□□□□□ -0.06
CUX1-212ENST00000547394 TULP4Q9NRJ4 1543 aa14.69□□□□□ -0.06
CUX1-212ENST00000547394 SBNO2Q9Y2G9 1366 aa14.68□□□□□ -0.06
CUX1-212ENST00000547394 TMEM131LA2VDJ0 1609 aa14.68□□□□□ -0.06
CUX1-212ENST00000547394 MTHFSP49914 203 aa14.68□□□□□ -0.06
CUX1-212ENST00000547394 C20orf194Q5TEA3 1177 aa14.67□□□□□ -0.06
CUX1-212ENST00000547394 SKAP1Q86WV1 359 aa14.67□□□□□ -0.06
CUX1-212ENST00000547394 NCKAP5LQ9HCH0 1330 aa14.66□□□□□ -0.06
CUX1-212ENST00000547394 TXNDC2Q86VQ3 553 aa14.66□□□□□ -0.06
CUX1-212ENST00000547394 ZMYM3Q14202 1370 aa14.66□□□□□ -0.06
CUX1-212ENST00000547394 YTHDC2Q9H6S0 1430 aaKnown RBP14.66□□□□□ -0.06
CUX1-212ENST00000547394 SLC24A1O60721 1099 aa14.66□□□□□ -0.06
CUX1-212ENST00000547394 CDK19Q9BWU1 502 aa14.66□□□□□ -0.06
CUX1-212ENST00000547394 KIF13AQ9H1H9 1805 aa14.65□□□□□ -0.06
CUX1-212ENST00000547394 ZC3H13Q5T200 1668 aaKnown RBP14.65□□□□□ -0.06
CUX1-212ENST00000547394 MYO3AQ8NEV4 1616 aa14.65□□□□□ -0.06
CUX1-212ENST00000547394 TRHP20396 242 aaPredicted RBP14.65□□□□□ -0.06
CUX1-212ENST00000547394 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.65□□□□□ -0.063e-6■□□□□ 10.3
CUX1-212ENST00000547394 CABP1Q9NZU7 370 aa14.65□□□□□ -0.06
CUX1-212ENST00000547394 NUTM2FA1L443 756 aa14.65□□□□□ -0.06
CUX1-212ENST00000547394 CGNL1Q0VF96 1302 aa14.65□□□□□ -0.06
CUX1-212ENST00000547394 A0A1W2PP64 1363 aa14.64□□□□□ -0.07
CUX1-212ENST00000547394 PDE3BQ13370 1112 aa14.64□□□□□ -0.07
CUX1-212ENST00000547394 ERICH6BQ5W0A0 696 aa14.64□□□□□ -0.07
CUX1-212ENST00000547394 ARHGEF28Q8N1W1 1705 aaKnown RBP14.64□□□□□ -0.07
CUX1-212ENST00000547394 NPC1L1Q9UHC9 1359 aa14.64□□□□□ -0.07
CUX1-212ENST00000547394 DUSP27Q5VZP5 1158 aa14.63□□□□□ -0.07
CUX1-212ENST00000547394 RIMS2Q9UQ26 1411 aa14.63□□□□□ -0.07
CUX1-212ENST00000547394 A2ML1A8K2U0 1454 aa14.63□□□□□ -0.07
CUX1-212ENST00000547394 GOLGA2Q08379 1002 aa14.63□□□□□ -0.07
CUX1-212ENST00000547394 PTPRMP28827 1452 aa14.62□□□□□ -0.07
CUX1-212ENST00000547394 PPM1GO15355 546 aaPredicted RBP14.62□□□□□ -0.07
CUX1-212ENST00000547394 CRBNQ96SW2 442 aa14.62□□□□□ -0.07
CUX1-212ENST00000547394 METP08581 1390 aa14.61□□□□□ -0.07
CUX1-212ENST00000547394 ALKQ9UM73 1620 aa14.61□□□□□ -0.07
CUX1-212ENST00000547394 ANKRD36BQ8N2N9 1353 aa14.6□□□□□ -0.07
CUX1-212ENST00000547394 U2SURPO15042 1029 aaKnown RBP14.6□□□□□ -0.07
CUX1-212ENST00000547394 U2AF1L5P0DN76 240 aaPredicted RBP14.59□□□□□ -0.07
CUX1-212ENST00000547394 U2AF1Q01081 240 aaKnown RBP eCLIP14.59□□□□□ -0.075e-6■□□□□ 11.2
CUX1-212ENST00000547394 ZNF521Q96K83 1311 aa14.59□□□□□ -0.07
CUX1-212ENST00000547394 ZFYVE9O95405 1425 aa14.59□□□□□ -0.07
CUX1-212ENST00000547394 FYB1O15117 783 aa14.59□□□□□ -0.07
CUX1-212ENST00000547394 SLC26A8Q96RN1 970 aa14.59□□□□□ -0.07
CUX1-212ENST00000547394 BCAR3O75815 825 aa14.58□□□□□ -0.08
CUX1-212ENST00000547394 ZRANB1Q9UGI0 708 aa14.58□□□□□ -0.08
CUX1-212ENST00000547394 AGLP35573 1532 aa14.58□□□□□ -0.08
CUX1-212ENST00000547394 ARHGEF40Q8TER5 1519 aa14.58□□□□□ -0.08
CUX1-212ENST00000547394 SLFN5Q08AF3 891 aa14.58□□□□□ -0.08
CUX1-212ENST00000547394 TCP11L2Q8N4U5 519 aa14.57□□□□□ -0.08
CUX1-212ENST00000547394 LTKP29376 864 aa14.56□□□□□ -0.08
CUX1-212ENST00000547394 WWC1Q8IX03 1113 aa14.56□□□□□ -0.08
CUX1-212ENST00000547394 TERF2IPQ9NYB0 399 aa14.56□□□□□ -0.08
CUX1-212ENST00000547394 PPP6R1Q9UPN7 881 aa14.56□□□□□ -0.08
CUX1-212ENST00000547394 POLR3AO14802 1390 aaPredicted RBP14.55□□□□□ -0.08
CUX1-212ENST00000547394 TNRQ92752 1358 aa14.55□□□□□ -0.08
CUX1-212ENST00000547394 BCL2L13Q9BXK5 485 aa14.55□□□□□ -0.08
CUX1-212ENST00000547394 SPATA31D1Q6ZQQ2 1576 aa14.54□□□□□ -0.08
CUX1-212ENST00000547394 CFAP53Q96M91 514 aa14.54□□□□□ -0.08
CUX1-212ENST00000547394 HDGFL2Q7Z4V5 671 aaPredicted RBP14.53□□□□□ -0.08
CUX1-212ENST00000547394 CD163L1Q9NR16 1453 aa14.53□□□□□ -0.08
CUX1-212ENST00000547394 NME9Q86XW9 330 aa14.52□□□□□ -0.09
CUX1-212ENST00000547394 RUNDC1Q96C34 613 aa14.52□□□□□ -0.09
CUX1-212ENST00000547394 REREQ9P2R6 1566 aa14.52□□□□□ -0.09
CUX1-212ENST00000547394 ATAD2Q6PL18 1390 aa14.52□□□□□ -0.09
CUX1-212ENST00000547394 ABCC11Q96J66 1382 aa14.52□□□□□ -0.09
CUX1-212ENST00000547394 INSRP06213 1382 aa14.51□□□□□ -0.09
CUX1-212ENST00000547394 SOX12O15370 315 aa14.51□□□□□ -0.09
CUX1-212ENST00000547394 MSH5O43196 834 aa14.5□□□□□ -0.09
CUX1-212ENST00000547394 WASLO00401 505 aaPredicted RBP14.5□□□□□ -0.09
CUX1-212ENST00000547394 FRAT1Q92837 279 aaPredicted RBP14.5□□□□□ -0.09
CUX1-212ENST00000547394 TNNQ9UQP3 1299 aa14.49□□□□□ -0.09
CUX1-212ENST00000547394 E9PSI1 815 aa14.49□□□□□ -0.09
CUX1-212ENST00000547394 TSR2Q969E8 191 aaKnown RBP14.49□□□□□ -0.09
CUX1-212ENST00000547394 NUDT16Q96DE0 195 aaKnown RBP14.49□□□□□ -0.09
CUX1-212ENST00000547394 EMILIN1Q9Y6C2 1016 aa14.49□□□□□ -0.09
CUX1-212ENST00000547394 SHPRHQ149N8 1683 aa14.49□□□□□ -0.09
CUX1-212ENST00000547394 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.48□□□□□ -0.09
CUX1-212ENST00000547394 PUS7Q96PZ0 661 aaKnown RBP14.48□□□□□ -0.09
CUX1-212ENST00000547394 TRMT2AQ8IZ69 625 aaKnown RBP14.48□□□□□ -0.09
CUX1-212ENST00000547394 RBM33Q96EV2 1170 aaKnown RBP14.48□□□□□ -0.09
CUX1-212ENST00000547394 TMEM2Q9UHN6 1383 aa14.48□□□□□ -0.09
CUX1-212ENST00000547394 HMOX1P09601 288 aa14.48□□□□□ -0.09
CUX1-212ENST00000547394 RRS1Q15050 365 aaKnown RBP14.48□□□□□ -0.09
CUX1-212ENST00000547394 ROBO2Q9HCK4 1378 aa14.48□□□□□ -0.09
CUX1-212ENST00000547394 PANK1Q8TE04 598 aa14.47□□□□□ -0.09
CUX1-212ENST00000547394 PRR36Q9H6K5 1346 aa14.46□□□□□ -0.09
CUX1-212ENST00000547394 NRXN3Q9Y4C0 1643 aa14.46□□□□□ -0.09
CUX1-212ENST00000547394 PPIP5K1Q6PFW1 1433 aa14.46□□□□□ -0.09
CUX1-212ENST00000547394 CANXP27824 592 aaKnown RBP14.46□□□□□ -0.1
CUX1-212ENST00000547394 NKTRP30414 1462 aaKnown RBP14.45□□□□□ -0.1
CUX1-212ENST00000547394 CLUAP1Q96AJ1 413 aa14.45□□□□□ -0.1
CUX1-212ENST00000547394 NLRP1Q9C000 1473 aa14.45□□□□□ -0.1
CUX1-212ENST00000547394 POLKQ9UBT6 870 aa14.44□□□□□ -0.1
CUX1-212ENST00000547394 DIAPH1O60610 1272 aaKnown RBP14.44□□□□□ -0.1
CUX1-212ENST00000547394 PMFBP1Q8TBY8 1022 aa14.44□□□□□ -0.1
CUX1-212ENST00000547394 COG6Q9Y2V7 657 aa14.44□□□□□ -0.1
CUX1-212ENST00000547394 NSD2O96028 1365 aa14.43□□□□□ -0.1
CUX1-212ENST00000547394 NPM2Q86SE8 214 aaKnown RBP14.43□□□□□ -0.1
CUX1-212ENST00000547394 THUMPD2Q9BTF0 503 aaKnown RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms