RNA–Protein interactions for RNA: ENST00000546215.5

SCARB1-211, Transcript of scavenger receptor class B member 1, humanhuman

TSL 1 (best) BASIC

Gene SCARB1, Length 1,597 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-211ENST00000546215 TOM1O60784 492 aa29.59■■■□□ 2.33
SCARB1-211ENST00000546215 SAFB2Q14151 953 aaKnown RBP eCLIP29.58■■■□□ 2.33
SCARB1-211ENST00000546215 CARD11Q9BXL7 1154 aa29.58■■■□□ 2.33
SCARB1-211ENST00000546215 DCCP43146 1447 aa29.57■■■□□ 2.32
SCARB1-211ENST00000546215 CADPS2Q86UW7 1296 aa29.56■■■□□ 2.32
SCARB1-211ENST00000546215 ATF3P18847 181 aa29.55■■■□□ 2.32
SCARB1-211ENST00000546215 FBXO41Q8TF61 875 aa29.54■■■□□ 2.32
SCARB1-211ENST00000546215 CENPJQ9HC77 1338 aaPredicted RBP29.49■■■□□ 2.31
SCARB1-211ENST00000546215 SLAIN2Q9P270 581 aa29.49■■■□□ 2.31
SCARB1-211ENST00000546215 CDC42BPGQ6DT37 1551 aa29.48■■■□□ 2.31
SCARB1-211ENST00000546215 MINK1Q8N4C8 1332 aaPredicted RBP29.48■■■□□ 2.31
SCARB1-211ENST00000546215 PIP4K2BP78356 416 aa29.47■■■□□ 2.31
SCARB1-211ENST00000546215 HIRIP3Q9BW71 556 aaPredicted RBP29.47■■■□□ 2.31
SCARB1-211ENST00000546215 EIF3AQ14152 1382 aaKnown RBP29.46■■■□□ 2.31
SCARB1-211ENST00000546215 MST1RQ04912 1400 aa29.46■■■□□ 2.31
SCARB1-211ENST00000546215 ADGRB2O60241 1585 aa29.45■■■□□ 2.31
SCARB1-211ENST00000546215 QRICH2Q9H0J4 1663 aa29.42■■■□□ 2.3
SCARB1-211ENST00000546215 SCAF1Q9H7N4 1312 aaKnown RBP29.41■■■□□ 2.3
SCARB1-211ENST00000546215 C1orf167Q5SNV9 1468 aa29.4■■■□□ 2.3
SCARB1-211ENST00000546215 WASLO00401 505 aaPredicted RBP29.39■■■□□ 2.3
SCARB1-211ENST00000546215 FMN2Q9NZ56 1722 aa29.39■■■□□ 2.3
SCARB1-211ENST00000546215 USP47Q96K76 1375 aa29.37■■■□□ 2.29
SCARB1-211ENST00000546215 NUTM2FA1L443 756 aa29.37■■■□□ 2.29
SCARB1-211ENST00000546215 ROBO1Q9Y6N7 1651 aa29.36■■■□□ 2.29
SCARB1-211ENST00000546215 ST20-MTHFSA0A0A6YYL1 179 aa29.35■■■□□ 2.29
SCARB1-211ENST00000546215 BRINP3Q76B58 766 aa29.35■■■□□ 2.29
SCARB1-211ENST00000546215 SBNO2Q9Y2G9 1366 aa29.34■■■□□ 2.29
SCARB1-211ENST00000546215 CDK19Q9BWU1 502 aa29.34■■■□□ 2.29
SCARB1-211ENST00000546215 ILDR1Q86SU0 546 aaPredicted RBP29.33■■■□□ 2.29
SCARB1-211ENST00000546215 ORAI2Q96SN7 254 aa29.32■■■□□ 2.28
SCARB1-211ENST00000546215 TESK2Q96S53 571 aa29.3■■■□□ 2.28
SCARB1-211ENST00000546215 TULP4Q9NRJ4 1543 aa29.3■■■□□ 2.28
SCARB1-211ENST00000546215 ANKARQ7Z5J8 1434 aa29.3■■■□□ 2.28
SCARB1-211ENST00000546215 USP32Q8NFA0 1604 aa29.29■■■□□ 2.28
SCARB1-211ENST00000546215 RGPD8O14715 1765 aaPredicted RBP29.29■■■□□ 2.28
SCARB1-211ENST00000546215 PRR36Q9H6K5 1346 aa29.29■■■□□ 2.28
SCARB1-211ENST00000546215 ESCO1Q5FWF5 840 aa29.29■■■□□ 2.28
SCARB1-211ENST00000546215 EVC2Q86UK5 1308 aa29.28■■■□□ 2.28
SCARB1-211ENST00000546215 EIF4G2P78344 907 aaKnown RBP eCLIP29.25■■■□□ 2.272e-9■■■■□ 23.9
SCARB1-211ENST00000546215 NUDT16Q96DE0 195 aaKnown RBP29.25■■■□□ 2.27
SCARB1-211ENST00000546215 ATP7BP35670 1465 aa29.24■■■□□ 2.27
SCARB1-211ENST00000546215 SRPK2P78362 688 aaKnown RBP29.24■■■□□ 2.27
SCARB1-211ENST00000546215 CABP2Q9NPB3 220 aa29.24■■■□□ 2.27
SCARB1-211ENST00000546215 HSPA1LP34931 641 aa29.23■■■□□ 2.27
SCARB1-211ENST00000546215 SLC24A1O60721 1099 aa29.22■■■□□ 2.27
SCARB1-211ENST00000546215 HSPA5P11021 654 aaKnown RBP29.21■■■□□ 2.27
SCARB1-211ENST00000546215 DDX17Q92841 729 aaKnown RBP29.2■■■□□ 2.26
SCARB1-211ENST00000546215 PHF8Q9UPP1 1060 aa29.2■■■□□ 2.26
SCARB1-211ENST00000546215 AHDC1Q5TGY3 1603 aaPredicted RBP29.19■■■□□ 2.26
SCARB1-211ENST00000546215 CCDC61Q9Y6R9 512 aa29.19■■■□□ 2.26
SCARB1-211ENST00000546215 NHSL1Q5SYE7 1610 aa29.19■■■□□ 2.26
SCARB1-211ENST00000546215 FOXO3O43524 673 aa29.17■■■□□ 2.26
SCARB1-211ENST00000546215 PMFBP1Q8TBY8 1022 aa29.17■■■□□ 2.26
SCARB1-211ENST00000546215 KIF1AQ12756 1690 aa29.17■■■□□ 2.26
SCARB1-211ENST00000546215 ITSN1Q15811 1721 aa29.16■■■□□ 2.26
SCARB1-211ENST00000546215 TOPAZ1Q8N9V7 1692 aa29.15■■■□□ 2.26
SCARB1-211ENST00000546215 PHLPP1O60346 1717 aa29.15■■■□□ 2.26
SCARB1-211ENST00000546215 ZEB1P37275 1124 aaPredicted RBP29.15■■■□□ 2.26
SCARB1-211ENST00000546215 TMF1P82094 1093 aa29.14■■■□□ 2.26
SCARB1-211ENST00000546215 NPHP3Q7Z494 1330 aa29.14■■■□□ 2.26
SCARB1-211ENST00000546215 PUS7Q96PZ0 661 aaKnown RBP29.13■■■□□ 2.25
SCARB1-211ENST00000546215 DISP3Q9P2K9 1392 aa29.13■■■□□ 2.25
SCARB1-211ENST00000546215 PLEKHG3A1L390 1219 aa29.12■■■□□ 2.25
SCARB1-211ENST00000546215 SOS2Q07890 1332 aaPredicted RBP29.12■■■□□ 2.25
SCARB1-211ENST00000546215 ATAD2Q6PL18 1390 aa29.12■■■□□ 2.25
SCARB1-211ENST00000546215 COL16A1Q07092 1604 aaPredicted RBP29.12■■■□□ 2.25
SCARB1-211ENST00000546215 PPIP5K1Q6PFW1 1433 aa29.11■■■□□ 2.25
SCARB1-211ENST00000546215 CABP1Q9NZU7 370 aa29.09■■■□□ 2.25
SCARB1-211ENST00000546215 PXDNQ92626 1479 aa29.08■■■□□ 2.25
SCARB1-211ENST00000546215 XPCQ01831 940 aaPredicted RBP29.08■■■□□ 2.25
SCARB1-211ENST00000546215 NGDNQ8NEJ9 315 aaKnown RBP29.08■■■□□ 2.25
SCARB1-211ENST00000546215 POLR3AO14802 1390 aaPredicted RBP29.07■■■□□ 2.24
SCARB1-211ENST00000546215 ACEP12821 1306 aa29.06■■■□□ 2.24
SCARB1-211ENST00000546215 PSME1Q06323 249 aa29.05■■■□□ 2.24
SCARB1-211ENST00000546215 KRT28Q7Z3Y7 464 aa29.05■■■□□ 2.24
SCARB1-211ENST00000546215 CDCA8Q53HL2 280 aa29.04■■■□□ 2.24
SCARB1-211ENST00000546215 LRRC59Q96AG4 307 aaKnown RBP29.04■■■□□ 2.24
SCARB1-211ENST00000546215 TMC1Q8TDI8 760 aa29■■■□□ 2.23
SCARB1-211ENST00000546215 SLC12A5Q9H2X9 1139 aa29■■■□□ 2.23
SCARB1-211ENST00000546215 C11orf95C9JLR9 678 aaPredicted RBP28.99■■■□□ 2.23
SCARB1-211ENST00000546215 JCADQ9P266 1359 aa28.98■■■□□ 2.23
SCARB1-211ENST00000546215 SBNO1A3KN83 1393 aa28.98■■■□□ 2.23
SCARB1-211ENST00000546215 SPATA31A3Q5VYP0 1347 aa28.96■■■□□ 2.23
SCARB1-211ENST00000546215 NINLQ9Y2I6 1382 aa28.96■■■□□ 2.23
SCARB1-211ENST00000546215 TRPM3Q9HCF6 1732 aaPredicted RBP28.96■■■□□ 2.23
SCARB1-211ENST00000546215 CPSF1Q10570 1443 aaKnown RBP28.96■■■□□ 2.23
SCARB1-211ENST00000546215 CD163L1Q9NR16 1453 aa28.95■■■□□ 2.22
SCARB1-211ENST00000546215 ZNF692Q9BU19 519 aaPredicted RBP28.94■■■□□ 2.22
SCARB1-211ENST00000546215 PNPLA6Q8IY17 1366 aa28.94■■■□□ 2.22
SCARB1-211ENST00000546215 USP6P35125 1406 aa28.93■■■□□ 2.22
SCARB1-211ENST00000546215 TNS3Q68CZ2 1445 aa28.93■■■□□ 2.22
SCARB1-211ENST00000546215 SHPRHQ149N8 1683 aa28.92■■■□□ 2.22
SCARB1-211ENST00000546215 AKAP12Q02952 1782 aa28.92■■■□□ 2.22
SCARB1-211ENST00000546215 PAK3O75914 559 aaPredicted RBP28.9■■■□□ 2.22
SCARB1-211ENST00000546215 TERF2IPQ9NYB0 399 aa28.9■■■□□ 2.22
SCARB1-211ENST00000546215 SSH2Q76I76 1423 aa28.89■■■□□ 2.22
SCARB1-211ENST00000546215 BRD4O60885 1362 aaPredicted RBP28.89■■■□□ 2.22
SCARB1-211ENST00000546215 POLR3GLQ9BT43 218 aa28.89■■■□□ 2.22
SCARB1-211ENST00000546215 A0A1W2PP64 1363 aa28.89■■■□□ 2.21
SCARB1-211ENST00000546215 KTN1Q86UP2 1357 aaKnown RBP28.89■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms