RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 SHROOM2Q13796 1616 aa18.01■□□□□ 0.47
SRP54-202ENST00000546080 TCP11L2Q8N4U5 519 aa18.01■□□□□ 0.47
SRP54-202ENST00000546080 PNNQ9H307 717 aaKnown RBP18.01■□□□□ 0.47
SRP54-202ENST00000546080 NAP1L5Q96NT1 182 aaPredicted RBP18■□□□□ 0.47
SRP54-202ENST00000546080 PANK2Q9BZ23 570 aa18■□□□□ 0.47
SRP54-202ENST00000546080 C22orf23Q9BZE7 217 aa18■□□□□ 0.47
SRP54-202ENST00000546080 ABCC1P33527 1531 aa17.99■□□□□ 0.47
SRP54-202ENST00000546080 TRAK2O60296 914 aa17.99■□□□□ 0.47
SRP54-202ENST00000546080 CLCN1P35523 988 aa17.99■□□□□ 0.47
SRP54-202ENST00000546080 CFAP70Q5T0N1 1121 aa17.99■□□□□ 0.47
SRP54-202ENST00000546080 MORC1Q86VD1 984 aa17.99■□□□□ 0.47
SRP54-202ENST00000546080 MFAP1P55081 439 aaKnown RBP17.98■□□□□ 0.47
SRP54-202ENST00000546080 MVPQ14764 893 aaKnown RBP17.98■□□□□ 0.47
SRP54-202ENST00000546080 ABCA6Q8N139 1617 aa17.98■□□□□ 0.47
SRP54-202ENST00000546080 PLCH2O75038 1416 aa17.98■□□□□ 0.47
SRP54-202ENST00000546080 TRAPPC8Q9Y2L5 1435 aa17.98■□□□□ 0.47
SRP54-202ENST00000546080 MAP3K4Q9Y6R4 1608 aa17.98■□□□□ 0.47
SRP54-202ENST00000546080 EFCAB2Q5VUJ9 269 aa17.98■□□□□ 0.47
SRP54-202ENST00000546080 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
SRP54-202ENST00000546080 RTEL1-TNFRSF6BF6WH68 1400 aa17.97■□□□□ 0.47
SRP54-202ENST00000546080 NSD3Q9BZ95 1437 aa17.97■□□□□ 0.47
SRP54-202ENST00000546080 TET3O43151 1660 aa17.97■□□□□ 0.47
SRP54-202ENST00000546080 MRE11P49959 708 aa17.97■□□□□ 0.47
SRP54-202ENST00000546080 OSCARQ8IYS5 282 aa17.97■□□□□ 0.47
SRP54-202ENST00000546080 MYOM2P54296 1465 aa17.96■□□□□ 0.47
SRP54-202ENST00000546080 TNNT2P45379 298 aaPredicted RBP17.96■□□□□ 0.47
SRP54-202ENST00000546080 MYH16Q9H6N6 1097 aa17.96■□□□□ 0.47
SRP54-202ENST00000546080 NEURL4Q96JN8 1562 aa17.96■□□□□ 0.47
SRP54-202ENST00000546080 DDX11L8A8MPP1 907 aa17.96■□□□□ 0.46
SRP54-202ENST00000546080 CCDC27Q2M243 656 aa17.96■□□□□ 0.46
SRP54-202ENST00000546080 HSCBQ8IWL3 235 aa17.96■□□□□ 0.46
SRP54-202ENST00000546080 FTSJ3Q8IY81 847 aaKnown RBP17.96■□□□□ 0.46
SRP54-202ENST00000546080 SPAG9O60271 1321 aaKnown RBP17.95■□□□□ 0.46
SRP54-202ENST00000546080 KANK1Q14678 1352 aa17.95■□□□□ 0.46
SRP54-202ENST00000546080 DEPDC5O75140 1603 aa17.95■□□□□ 0.46
SRP54-202ENST00000546080 MYO3AQ8NEV4 1616 aa17.95■□□□□ 0.46
SRP54-202ENST00000546080 GLIPR1L2Q4G1C9 344 aa17.94■□□□□ 0.46
SRP54-202ENST00000546080 ZKSCAN2Q63HK3 967 aa17.94■□□□□ 0.46
SRP54-202ENST00000546080 SBNO2Q9Y2G9 1366 aa17.93■□□□□ 0.46
SRP54-202ENST00000546080 DZIP1LQ8IYY4 767 aaKnown RBP17.93■□□□□ 0.46
SRP54-202ENST00000546080 ADGRF5Q8IZF2 1346 aa17.93■□□□□ 0.46
SRP54-202ENST00000546080 CFAP53Q96M91 514 aa17.92■□□□□ 0.46
SRP54-202ENST00000546080 GRPEL1Q9HAV7 217 aa17.92■□□□□ 0.46
SRP54-202ENST00000546080 ZFYVE16Q7Z3T8 1539 aa17.92■□□□□ 0.46
SRP54-202ENST00000546080 ISY1Q9ULR0 285 aaKnown RBP17.91■□□□□ 0.46
SRP54-202ENST00000546080 ZNF518AQ6AHZ1 1483 aa17.91■□□□□ 0.46
SRP54-202ENST00000546080 HSP90AA1P07900 732 aaKnown RBP17.9■□□□□ 0.46
SRP54-202ENST00000546080 MTHFSP49914 203 aa17.89■□□□□ 0.45
SRP54-202ENST00000546080 HDAC1Q13547 482 aaPredicted RBP17.89■□□□□ 0.45
SRP54-202ENST00000546080 ZNF692Q9BU19 519 aaPredicted RBP17.89■□□□□ 0.45
SRP54-202ENST00000546080 UGGT1Q9NYU2 1555 aa17.88■□□□□ 0.45
SRP54-202ENST00000546080 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
SRP54-202ENST00000546080 NCOA3Q9Y6Q9 1424 aa17.88■□□□□ 0.45
SRP54-202ENST00000546080 CT47B1P0C2W7 299 aaPredicted RBP17.87■□□□□ 0.45
SRP54-202ENST00000546080 SMC4Q9NTJ3 1288 aa17.87■□□□□ 0.45
SRP54-202ENST00000546080 VWDEQ8N2E2 1590 aa17.87■□□□□ 0.45
SRP54-202ENST00000546080 IFT172Q9UG01 1749 aa17.87■□□□□ 0.45
SRP54-202ENST00000546080 KIF1BO60333 1816 aa17.87■□□□□ 0.45
SRP54-202ENST00000546080 SLC12A5Q9H2X9 1139 aa17.87■□□□□ 0.45
SRP54-202ENST00000546080 USP32Q8NFA0 1604 aa17.86■□□□□ 0.45
SRP54-202ENST00000546080 ITPRIPQ8IWB1 547 aa17.86■□□□□ 0.45
SRP54-202ENST00000546080 AFAP1Q8N556 730 aa17.86■□□□□ 0.45
SRP54-202ENST00000546080 DDX19BQ9UMR2 479 aa17.86■□□□□ 0.45
SRP54-202ENST00000546080 ESPNB1AK53 854 aa17.86■□□□□ 0.45
SRP54-202ENST00000546080 HSP90AA2PQ14568 343 aaPredicted RBP17.86■□□□□ 0.45
SRP54-202ENST00000546080 RRP9O43818 475 aaKnown RBP17.85■□□□□ 0.45
SRP54-202ENST00000546080 ADGRL1O94910 1474 aa17.85■□□□□ 0.45
SRP54-202ENST00000546080 U2AF1L5P0DN76 240 aaPredicted RBP17.84■□□□□ 0.45
SRP54-202ENST00000546080 TRIM27P14373 513 aa17.84■□□□□ 0.45
SRP54-202ENST00000546080 DDIT3P35638 169 aa17.84■□□□□ 0.45
SRP54-202ENST00000546080 U2AF1Q01081 240 aaKnown RBP eCLIP17.84■□□□□ 0.452e-23■■■■■ 60.6
SRP54-202ENST00000546080 TRIM44Q96DX7 344 aaPredicted RBP17.84■□□□□ 0.45
SRP54-202ENST00000546080 ADGRB2O60241 1585 aa17.84■□□□□ 0.45
SRP54-202ENST00000546080 TSR2Q969E8 191 aaKnown RBP17.84■□□□□ 0.45
SRP54-202ENST00000546080 SNX21Q969T3 373 aa17.84■□□□□ 0.45
SRP54-202ENST00000546080 NRXN1Q9ULB1 1477 aa17.84■□□□□ 0.45
SRP54-202ENST00000546080 SETBP1Q9Y6X0 1596 aa17.83■□□□□ 0.45
SRP54-202ENST00000546080 RBM25P49756 843 aaKnown RBP17.83■□□□□ 0.45
SRP54-202ENST00000546080 SMC5Q8IY18 1101 aa17.83■□□□□ 0.45
SRP54-202ENST00000546080 GBP4Q96PP9 640 aa17.83■□□□□ 0.45
SRP54-202ENST00000546080 ZC3H13Q5T200 1668 aaKnown RBP17.83■□□□□ 0.44
SRP54-202ENST00000546080 QRICH2Q9H0J4 1663 aa17.83■□□□□ 0.44
SRP54-202ENST00000546080 ZCCHC11Q5TAX3 1644 aaKnown RBP17.83■□□□□ 0.44
SRP54-202ENST00000546080 KIF3BO15066 747 aa17.83■□□□□ 0.44
SRP54-202ENST00000546080 CIZ1Q9ULV3 898 aaPredicted RBP17.83■□□□□ 0.44
SRP54-202ENST00000546080 TRAK1Q9UPV9 953 aa17.83■□□□□ 0.44
SRP54-202ENST00000546080 MROH2AA6NES4 1674 aa17.83■□□□□ 0.44
SRP54-202ENST00000546080 HSP90AB1P08238 724 aaKnown RBP17.82■□□□□ 0.44
SRP54-202ENST00000546080 EXOSC9Q06265 439 aaKnown RBP17.82■□□□□ 0.44
SRP54-202ENST00000546080 TNPO1Q92973 898 aaKnown RBP17.82■□□□□ 0.44
SRP54-202ENST00000546080 ATF7IPQ6VMQ6 1270 aa17.81■□□□□ 0.44
SRP54-202ENST00000546080 ATP7AQ04656 1500 aa17.81■□□□□ 0.44
SRP54-202ENST00000546080 PTMSP20962 102 aa17.8■□□□□ 0.44
SRP54-202ENST00000546080 SKOR2Q2VWA4 1001 aaPredicted RBP17.8■□□□□ 0.44
SRP54-202ENST00000546080 ERBB4Q15303 1308 aa17.8■□□□□ 0.44
SRP54-202ENST00000546080 SSH1Q8WYL5 1049 aa17.8■□□□□ 0.44
SRP54-202ENST00000546080 NOS1P29475 1434 aa17.8■□□□□ 0.44
SRP54-202ENST00000546080 ERCC6L2Q5T890 1561 aa17.8■□□□□ 0.44
SRP54-202ENST00000546080 INO80Q9ULG1 1556 aaPredicted RBP17.79■□□□□ 0.44
SRP54-202ENST00000546080 RAB3GAP1Q15042 981 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms