RNA–Protein interactions for RNA: ENST00000545930.5

DDB1-225, Transcript of damage specific DNA binding protein 1, human

TSL 2

Gene DDB1, Length 1,278 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-225	ENST00000545930	RPGRIP1L	Q68CZ1	1315 aa		13.93	□□□□□ -0.18
DDB1-225	ENST00000545930	SYNM	O15061	1565 aa		13.92	□□□□□ -0.18
DDB1-225	ENST00000545930	NEURL4	Q96JN8	1562 aa		13.92	□□□□□ -0.18
DDB1-225	ENST00000545930	RGL3	Q3MIN7	710 aa		13.92	□□□□□ -0.18
DDB1-225	ENST00000545930	PIK3C2B	O00750	1634 aa		13.92	□□□□□ -0.18
DDB1-225	ENST00000545930	CLTCL1	P53675	1640 aa		13.92	□□□□□ -0.18
DDB1-225	ENST00000545930	ZNF326	Q5BKZ1	582 aa	Known RBP	13.91	□□□□□ -0.18
DDB1-225	ENST00000545930	POTEG	Q6S5H5	508 aa		13.91	□□□□□ -0.18
DDB1-225	ENST00000545930	IRX5	P78411	483 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-225	ENST00000545930	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.9	□□□□□ -0.18
DDB1-225	ENST00000545930	PCDH10	Q9P2E7	1040 aa		13.9	□□□□□ -0.18
DDB1-225	ENST00000545930	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
DDB1-225	ENST00000545930	L3MBTL2	Q969R5	705 aa		13.89	□□□□□ -0.19
DDB1-225	ENST00000545930	PCDHB8	Q9UN66	801 aa		13.89	□□□□□ -0.19
DDB1-225	ENST00000545930	SPATA31E1	Q6ZUB1	1445 aa		13.89	□□□□□ -0.19
DDB1-225	ENST00000545930	VGF	O15240	615 aa	Predicted RBP	13.88	□□□□□ -0.19
DDB1-225	ENST00000545930	DCAF11	Q8TEB1	546 aa		13.88	□□□□□ -0.19
DDB1-225	ENST00000545930	KDM5A	P29375	1690 aa	Known RBP	13.88	□□□□□ -0.19
DDB1-225	ENST00000545930	SPOCK2	Q92563	424 aa		13.87	□□□□□ -0.19
DDB1-225	ENST00000545930	OCEL1	Q9H607	264 aa		13.87	□□□□□ -0.19
DDB1-225	ENST00000545930	UHRF1BP1	Q6BDS2	1440 aa		13.87	□□□□□ -0.19
DDB1-225	ENST00000545930	UGGT1	Q9NYU2	1555 aa		13.87	□□□□□ -0.19
DDB1-225	ENST00000545930	A2ML1	A8K2U0	1454 aa		13.87	□□□□□ -0.19
DDB1-225	ENST00000545930	PPP1R15A	O75807	674 aa	Predicted RBP	13.86	□□□□□ -0.19
DDB1-225	ENST00000545930	EID1	Q9Y6B2	187 aa		13.85	□□□□□ -0.19
DDB1-225	ENST00000545930	TMEM131L	A2VDJ0	1609 aa		13.85	□□□□□ -0.19
DDB1-225	ENST00000545930	ADGRB3	O60242	1522 aa		13.85	□□□□□ -0.19
DDB1-225	ENST00000545930	KDM2A	Q9Y2K7	1162 aa		13.84	□□□□□ -0.19
DDB1-225	ENST00000545930	MYO3A	Q8NEV4	1616 aa		13.82	□□□□□ -0.2
DDB1-225	ENST00000545930	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.82	□□□□□ -0.2
DDB1-225	ENST00000545930	ZFYVE9	O95405	1425 aa		13.81	□□□□□ -0.2
DDB1-225	ENST00000545930	UBR1	Q8IWV7	1749 aa		13.81	□□□□□ -0.2
DDB1-225	ENST00000545930	GOLGA2	Q08379	1002 aa		13.81	□□□□□ -0.2
DDB1-225	ENST00000545930	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.81	□□□□□ -0.2
DDB1-225	ENST00000545930	FAM163A	Q96GL9	167 aa	Predicted RBP	13.81	□□□□□ -0.2
DDB1-225	ENST00000545930	MYO5B	Q9ULV0	1848 aa		13.8	□□□□□ -0.2
DDB1-225	ENST00000545930	ZNF142	P52746	1687 aa	Predicted RBP	13.8	□□□□□ -0.2
DDB1-225	ENST00000545930	ANKLE2	Q86XL3	938 aa		13.8	□□□□□ -0.2
DDB1-225	ENST00000545930	TMEM2	Q9UHN6	1383 aa		13.8	□□□□□ -0.2
DDB1-225	ENST00000545930	RIMS2	Q9UQ26	1411 aa		13.8	□□□□□ -0.2
DDB1-225	ENST00000545930	TXNDC2	Q86VQ3	553 aa		13.79	□□□□□ -0.2
DDB1-225	ENST00000545930	PLSCR2	Q9NRY7	297 aa		13.79	□□□□□ -0.2
DDB1-225	ENST00000545930	MYOM2	P54296	1465 aa		13.79	□□□□□ -0.2
DDB1-225	ENST00000545930	PPL	O60437	1756 aa		13.78	□□□□□ -0.2
DDB1-225	ENST00000545930	LCE2D	Q5TA82	110 aa	Predicted RBP	13.78	□□□□□ -0.2
DDB1-225	ENST00000545930	SLIT1	O75093	1534 aa		13.78	□□□□□ -0.2
DDB1-225	ENST00000545930	MKRN3	Q13064	507 aa	Known RBP	13.77	□□□□□ -0.21
DDB1-225	ENST00000545930	SLAIN1	Q8ND83	568 aa		13.77	□□□□□ -0.21
DDB1-225	ENST00000545930	IFT172	Q9UG01	1749 aa		13.76	□□□□□ -0.21
DDB1-225	ENST00000545930	NEXMIF	Q5QGS0	1516 aa		13.76	□□□□□ -0.21
DDB1-225	ENST00000545930	BCAN	Q96GW7	911 aa		13.76	□□□□□ -0.21
DDB1-225	ENST00000545930	ARHGAP23	Q9P227	1491 aa		13.75	□□□□□ -0.21
DDB1-225	ENST00000545930	PRAG1	Q86YV5	1406 aa		13.75	□□□□□ -0.21
DDB1-225	ENST00000545930	ADGRF5	Q8IZF2	1346 aa		13.75	□□□□□ -0.21
DDB1-225	ENST00000545930	PSEN1	P49768	467 aa		13.75	□□□□□ -0.21
DDB1-225	ENST00000545930	PDAP1	Q13442	181 aa	Known RBP	13.74	□□□□□ -0.21
DDB1-225	ENST00000545930	NBPF8	Q3BBV2	869 aa		13.74	□□□□□ -0.21
DDB1-225	ENST00000545930	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.74	□□□□□ -0.21
DDB1-225	ENST00000545930	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.74	□□□□□ -0.21
DDB1-225	ENST00000545930	NRXN1	Q9ULB1	1477 aa		13.74	□□□□□ -0.21
DDB1-225	ENST00000545930	PLEKHG1	Q9ULL1	1385 aa		13.73	□□□□□ -0.21
DDB1-225	ENST00000545930	C14orf93	Q9H972	538 aa	Known RBP	13.73	□□□□□ -0.21
DDB1-225	ENST00000545930	SCAF11	Q99590	1463 aa	Known RBP	13.73	□□□□□ -0.21
DDB1-225	ENST00000545930	LTK	P29376	864 aa		13.72	□□□□□ -0.21
DDB1-225	ENST00000545930	PIK3C2G	O75747	1445 aa		13.72	□□□□□ -0.21
DDB1-225	ENST00000545930	KIAA1210	Q9ULL0	1709 aa		13.71	□□□□□ -0.21
DDB1-225	ENST00000545930	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.71	□□□□□ -0.21
DDB1-225	ENST00000545930	ROCK2	O75116	1388 aa	Known RBP	13.71	□□□□□ -0.22
DDB1-225	ENST00000545930	CFAP70	Q5T0N1	1121 aa		13.7	□□□□□ -0.22
DDB1-225	ENST00000545930	CARD11	Q9BXL7	1154 aa		13.7	□□□□□ -0.22
DDB1-225	ENST00000545930	TBX22	Q9Y458	520 aa		13.7	□□□□□ -0.22
DDB1-225	ENST00000545930	LAMC1	P11047	1609 aa		13.69	□□□□□ -0.22
DDB1-225	ENST00000545930	RALGAPB	Q86X10	1494 aa		13.68	□□□□□ -0.22
DDB1-225	ENST00000545930	LMTK3	Q96Q04	1460 aa		13.68	□□□□□ -0.22
DDB1-225	ENST00000545930	SLC24A1	O60721	1099 aa		13.68	□□□□□ -0.22
DDB1-225	ENST00000545930	PDCD7	Q8N8D1	485 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-225	ENST00000545930	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.68	□□□□□ -0.22
DDB1-225	ENST00000545930	MED14	O60244	1454 aa		13.67	□□□□□ -0.22
DDB1-225	ENST00000545930	SNPH	O15079	494 aa		13.67	□□□□□ -0.22
DDB1-225	ENST00000545930	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
DDB1-225	ENST00000545930	GPRASP1	Q5JY77	1395 aa		13.67	□□□□□ -0.22
DDB1-225	ENST00000545930	TRPM1	Q7Z4N2	1603 aa		13.67	□□□□□ -0.22
DDB1-225	ENST00000545930	SETBP1	Q9Y6X0	1596 aa		13.66	□□□□□ -0.22
DDB1-225	ENST00000545930	HSPA2	P54652	639 aa		13.66	□□□□□ -0.22
DDB1-225	ENST00000545930	NBPF1	Q3BBV0	1214 aa		13.66	□□□□□ -0.22
DDB1-225	ENST00000545930	NCKAP5L	Q9HCH0	1330 aa		13.65	□□□□□ -0.22
DDB1-225	ENST00000545930	NPHP4	O75161	1426 aa	Predicted RBP	13.65	□□□□□ -0.22
DDB1-225	ENST00000545930	ALK	Q9UM73	1620 aa		13.65	□□□□□ -0.22
DDB1-225	ENST00000545930	POLR1A	O95602	1720 aa	Predicted RBP	13.65	□□□□□ -0.22
DDB1-225	ENST00000545930	DIP2A	Q14689	1571 aa		13.65	□□□□□ -0.22
DDB1-225	ENST00000545930	PIK3R4	Q99570	1358 aa		13.64	□□□□□ -0.23
DDB1-225	ENST00000545930	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
DDB1-225	ENST00000545930	EIF3A	Q14152	1382 aa	Known RBP	13.63	□□□□□ -0.23
DDB1-225	ENST00000545930	C3orf67	Q6ZVT6	689 aa		13.63	□□□□□ -0.23
DDB1-225	ENST00000545930	SLC26A8	Q96RN1	970 aa		13.63	□□□□□ -0.23
DDB1-225	ENST00000545930	TMEM132E	Q6IEE7	984 aa		13.62	□□□□□ -0.23
DDB1-225	ENST00000545930	ILDR1	Q86SU0	546 aa	Predicted RBP	13.62	□□□□□ -0.23
DDB1-225	ENST00000545930	SIRT1	Q96EB6	747 aa		13.62	□□□□□ -0.23
DDB1-225	ENST00000545930	ADAMTS13	Q76LX8	1427 aa		13.62	□□□□□ -0.23
DDB1-225	ENST00000545930	IQGAP1	P46940	1657 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms